mRNA_F-serratus_M_contig848.19870.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig848.19870.1
Unique NamemRNA_F-serratus_M_contig848.19870.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig848.19870.1 vs. uniprot
Match: A0A6H5KVD6_9PHAE (DUF4524 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD6_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 7.990e-23
Identity = 116/304 (38.16%), Postives = 143/304 (47.04%), Query Frame = 1 
Query:  259 LGDITSRAASLRRQYLVHRRCSNGTLIPGIHEGAEKRGERVGMLDSACFWGERAAPEGSGVLL-PTAKAATVPASAFRATSP-PRNKPYM----------------------SADVLWGEERGGASFVAFADGRARGVFSDRTIVTLGAP-FPKAAYGM--------------ISHRAP--VCGAAIGVGRPHSGPGEGEEEHGEVDRNVECVLPDGTVRRFSLLSMSREEAFSNRRGGA---ISGNRG---LVPCVAAVRRFEVRARADPAERRASAAREEAVRLAASVELDRNRRFIELHRL 1029
            LG ITSRA +LR+Q+L   RCS G        G    G+     D       R   +    L  P++ ++ V A A  A +P P  KPY                       S  V+   ERGGASFVAFADGRARG F+DRTIV+LGAP F +   G               IS+       G A  V RP     + EEE  E DR +EC+  DGTV R +  S+ R  +F  R GG     SGN G   L P V AV RF   A   PA+RRA+A RE A     + E +RNRRF++L  L
Sbjct:  605 LGAITSRAIALRQQFL---RCS-GIAATAAAAGIRGAGDH---RDIVKIRPPRVVVQPPAALSSPSSSSSPVEAVAGNAAAPRPTTKPYAPPEAGGARWLGSPSSRGGTAAGSPSVVELVERGGASFVAFADGRARGAFADRTIVSLGAPVFYRPLRGSRCGGXXXXXXXXRGISYYGSGGPKGVATAVVRPGCSDVD-EEEKEEEDREIECIRADGTVLRLTRHSLDRRGSFGGRSGGGNSPASGNCGVGALRPYVVAVLRFADWAATHPADRRAAAGREAAGXXXXAAEAERNRRFVDLQLL 900
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BLAST of mRNA_F-serratus_M_contig848.19870.1 vs. uniprot
Match: D8LL70_ECTSI (DUF4524 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL70_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.360e-20
Identity = 128/431 (29.70%), Postives = 169/431 (39.21%), Query Frame = 1 
Query:  259 LGDITSRAASLRRQYLVHRRCSNGTLIPGIHEGAEKRGERVGMLDSACFWGERAAPEGSGVLLPTAKAATVPASAFRATSP-PRNKPYM----------------------SADVLWGEERGGASFVAFADGRARGVFSDRTIVTLGAPFPKAAYGMISHRAPVCGAAIGVG---------------------RPHSGPGEGEEEHGEVDRNVECVLPDGTVRRFSLLSMSREEAFSNRRGGA---ISGNRG---LVPCVAAVRRFEVRARADPAERRASAAREEAVRLAASVELDRNRRFIELHRLMRRQARP------------DRRD----TQSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKE-------------KDYIDRARIGGVVVRGRAPTGDLERNALVERVLKANLKVLLGQTPS 1314
            LG+I SRA +LR+Q+L   +CS G         A +RG     +              S +  P++ ++ V A    A +P P NKPY                       S  V+   ERGGASFVAFADGRARG F+DRTIV LGAPF            P+ G+  GVG                                      R VEC+  DGTV R +  S+ R  +F  R GG      G+ G   L P V AV RF   A   PA+RRA+A RE A     + E +RNRRF++L  L  +++ P            D R+    T S AA                               +              + +D    G  V R     G  +RN+LV  +L+AN KVL+G+  S
Sbjct:  448 LGNIASRAIALRQQFL---QCS-GNPAAAAAAAAGRRGPGEPQVTVKIRPSLVVVQPPSALSSPSSSSSPVEAVVRNAAAPRPTNKPYAPPEEGGARWLGSSSSRGRMAAGSPSVVESVERGGASFVAFADGRARGTFADRTIVCLGAPF---------FYRPLRGSRCGVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVECIRADGTVLRLTRRSLDRRGSFGGRSGGGNIPAGGDCGVGALRPYVVAVLRFADWAATHPADRRAAAGREAAXXXXXAAEAERNRRFVDLQLLAAKRSVPPPPLLCYHRGGLDPREPYDGTPSGAAGSRRGGRRSGDEASASPGLRRRAVGACGEENDDGQYKENNRPRRPSNRVDVLEEGSGVSRWGGGDGGRQRNSLVAGLLEANRKVLMGEHMS 865
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig848.19870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVD6_9PHAE7.990e-2338.16DUF4524 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LL70_ECTSI1.360e-2029.70DUF4524 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig848contigF-serratus_M_contig848:246323..248129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1440
Cds size939
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig848.19870.1prot_F-serratus_M_contig848.19870.1Fucus serratus malepolypeptideF-serratus_M_contig848 247074..248012 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932498.5336921-UTR-F-serratus_M_contig848:246322..2463501622932498.5336921-UTR-F-serratus_M_contig848:246322..246350Fucus serratus maleUTRF-serratus_M_contig848 246323..246350 +
1690964337.7352417-UTR-F-serratus_M_contig848:246322..2463501690964337.7352417-UTR-F-serratus_M_contig848:246322..246350Fucus serratus maleUTRF-serratus_M_contig848 246323..246350 +
1622932498.5484185-UTR-F-serratus_M_contig848:246717..2470731622932498.5484185-UTR-F-serratus_M_contig848:246717..247073Fucus serratus maleUTRF-serratus_M_contig848 246718..247073 +
1690964337.7531474-UTR-F-serratus_M_contig848:246717..2470731690964337.7531474-UTR-F-serratus_M_contig848:246717..247073Fucus serratus maleUTRF-serratus_M_contig848 246718..247073 +
1622932498.5803025-UTR-F-serratus_M_contig848:248012..2481291622932498.5803025-UTR-F-serratus_M_contig848:248012..248129Fucus serratus maleUTRF-serratus_M_contig848 248013..248129 +
1690964337.7771525-UTR-F-serratus_M_contig848:248012..2481291690964337.7771525-UTR-F-serratus_M_contig848:248012..248129Fucus serratus maleUTRF-serratus_M_contig848 248013..248129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932498.5651336-CDS-F-serratus_M_contig848:247073..2480121622932498.5651336-CDS-F-serratus_M_contig848:247073..248012Fucus serratus maleCDSF-serratus_M_contig848 247074..248012 +
1690964337.76647-CDS-F-serratus_M_contig848:247073..2480121690964337.76647-CDS-F-serratus_M_contig848:247073..248012Fucus serratus maleCDSF-serratus_M_contig848 247074..248012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig848.19870.1

>prot_F-serratus_M_contig848.19870.1 ID=prot_F-serratus_M_contig848.19870.1|Name=mRNA_F-serratus_M_contig848.19870.1|organism=Fucus serratus male|type=polypeptide|length=313bp
MLDSACFWGERAAPEGSGVLLPTAKAATVPASAFRATSPPRNKPYMSADV
LWGEERGGASFVAFADGRARGVFSDRTIVTLGAPFPKAAYGMISHRAPVC
GAAIGVGRPHSGPGEGEEEHGEVDRNVECVLPDGTVRRFSLLSMSREEAF
SNRRGGAISGNRGLVPCVAAVRRFEVRARADPAERRASAAREEAVRLAAS
VELDRNRRFIELHRLMRRQARPDRRDTQSAAAAAEARPSPLQRSEGESPA
SAPYQHRRREGEKEKDYIDRARIGGVVVRGRAPTGDLERNALVERVLKAN
LKVLLGQTPSYS*
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mRNA from alignment at F-serratus_M_contig848:246323..248129+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig848.19870.1 ID=mRNA_F-serratus_M_contig848.19870.1|Name=mRNA_F-serratus_M_contig848.19870.1|organism=Fucus serratus male|type=mRNA|length=1807bp|location=Sequence derived from alignment at F-serratus_M_contig848:246323..248129+ (Fucus serratus male)
CGTCACCGTTCACGTAAGGGCTTATCAGGCTAGTGTTGTAACTGATGTAC
AGGACGTGGGGTATGGTGGAGAACTATGAACAGTAACGCTTATTCACGTT
TTGTCGCCTCTCCGACTCCTTATTTTTATAACGAAACGTTACCTGTTGGG
TATCACCACGTCGGTGCCCGCGCGCGCGCGCTTGTTCGTTCCCCGAGACA
CACAGGAATACCAAACACTGGATGGGTCACCTCCCTCCCCCCACGTGCAA
CTGACGCCATCCTTGCCGGTCGCACAGCTTATGCTGCTGTATAACTAGTA
GCTGGGATCGGAAAGCACGAATAAAATTGACCACCCCCCCCCCCCTCCAC
TTCGTTTTCGCATCTTCACGGGGTGCCGCGTTGGAAGAAGCGCAGGTCGT
GGTTGAAGACGACGGGACGGAGGTTTCGCTGGAGGGTGATTTCGTGCGCG
TTTGGCACGCCTCCGTGGCTTCATCCGCCCGGCGGCCCAGAGACCGGTTG
CTGCACGTCTCCGCAACAAGCACGGTCTATTTTCGTGTCTCGAAGGCGCC
GGAGACCCCGTTGGGACTGCTGATTTCGAGCAACGATGGTGACAGCAGCA
GCGCGCGCGGGTGGAGAAAAATTTCCTCGGCGATATCACTTCGAGAGCGG
CGAGCCTGCGGCGGCAGTACTTGGTGCATCGCCGCTGTTCTAACGGCACT
CTGATTCCCGGGATACATGAAGGTGCAGAGAAGCGCGGAGAACGAGTTGG
CATGCTGGATTCTGCTTGCTTTTGGGGAGAACGAGCCGCGCCGGAGGGCA
GTGGTGTGTTACTACCGACAGCGAAGGCGGCAACGGTACCGGCGAGCGCG
TTCCGCGCGACGTCGCCGCCGCGGAACAAACCTTATATGTCCGCCGACGT
GCTGTGGGGGGAGGAGCGCGGCGGCGCTTCCTTCGTGGCGTTCGCCGACG
GCCGCGCCCGCGGAGTGTTCTCCGACCGGACAATCGTCACCCTCGGTGCC
CCTTTCCCTAAGGCAGCGTACGGAATGATCTCGCACCGCGCGCCGGTTTG
TGGCGCGGCGATTGGGGTAGGGCGGCCCCACTCAGGCCCTGGAGAGGGGG
AAGAGGAACACGGGGAGGTAGACCGAAACGTCGAATGCGTCCTCCCGGAC
GGGACCGTCAGGCGCTTCTCGCTTCTTTCGATGTCCCGCGAGGAAGCCTT
TAGCAACAGGCGAGGTGGAGCCATCTCGGGCAATCGCGGCCTTGTCCCTT
GCGTCGCAGCAGTTCGTCGCTTCGAGGTTCGGGCGCGCGCCGATCCCGCC
GAGCGCCGTGCATCGGCGGCCCGGGAGGAGGCTGTGAGGCTGGCGGCTTC
CGTCGAGCTGGATCGAAATCGCCGTTTCATTGAGTTGCATCGGCTGATGA
GGCGCCAGGCTCGTCCCGATCGTAGGGATACCCAGAGCGCCGCCGCTGCC
GCTGAGGCCCGACCTTCCCCTTTGCAACGCTCGGAGGGGGAATCCCCAGC
GTCGGCTCCCTACCAGCATCGACGCCGCGAGGGAGAGAAGGAGAAGGACT
ATATTGACCGCGCTAGAATAGGGGGGGTAGTGGTGAGGGGCCGTGCGCCG
ACTGGGGACCTCGAAAGGAACGCTCTCGTGGAGCGGGTGCTTAAGGCTAA
TCTCAAGGTTCTTCTCGGCCAAACGCCCTCGTATTCTTGAGTTTGATGAA
TCAGATGTTATACAAACTAGATATTATATCTTACCCGACTGATCCATACT
CTGCTATATGTGTGATGACCATACATACATACATACCGGTACATATGATG
ATGATTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig848:246323..248129+

>mRNA_F-serratus_M_contig848.19870.1 ID=mRNA_F-serratus_M_contig848.19870.1|Name=mRNA_F-serratus_M_contig848.19870.1|organism=Fucus serratus male|type=CDS|length=1878bp|location=Sequence derived from alignment at F-serratus_M_contig848:246323..248129+ (Fucus serratus male)
ATGCTGGATTCTGCTTGCTTTTGGGGAGAACGAGCCGCGCCGGAGGGCAG
TGGTGTGTTACTACCGACAGCGAAGGCGGCAACGGTACCGGCGAGCGCGT
TCCGCGCGACGTCGCCGCCGCGGAACAAACCTTATATGTCCGCCGACGTG
CTGTGGGGGGAGGAGCGCGGCGGCGCTTCCTTCGTGGCGTTCGCCGACGG
CCGCGCCCGCGGAGTGTTCTCCGACCGGACAATCGTCACCCTCGGTGCCC
CTTTCCCTAAGGCAGCGTACGGAATGATCTCGCACCGCGCGCCGGTTTGT
GGCGCGGCGATTGGGGTAGGGCGGCCCCACTCAGGCCCTGGAGAGGGGGA
AGAGGAACACGGGGAGGTAGACCGAAACGTCGAATGCGTCCTCCCGGACG
GGACCGTCAGGCGCTTCTCGCTTCTTTCGATGTCCCGCGAGGAAGCCTTT
AGCAACAGGCGAGGTGGAGCCATCTCGGGCAATCGCGGCCTTGTCCCTTG
CGTCGCAGCAGTTCGTCGCTTCGAGGTTCGGGCGCGCGCCGATCCCGCCG
AGCGCCGTGCATCGGCGGCCCGGGAGGAGGCTGTGAGGCTGGCGGCTTCC
GTCGAGCTGGATCGAAATCGCCGTTTCATTGAGTTGCATCGGCTGATGAG
GCGCCAGGCTCGTCCCGATCGTAGGGATACCCAGAGCGCCGCCGCTGCCG
CTGAGGCCCGACCTTCCCCTTTGCAACGCTCGGAGGGGGAATCCCCAGCG
TCGGCTCCCTACCAGCATCGACGCCGCGAGGGAGAGAAGGAGAAGGACTA
TATTGACCGCGCTAGAATAGGGGGGGTAGTGGTGAGGGGCCGTGCGCCGA
CTGGGGACCTCGAAAGGAACGCTCTCGTGGAGCGGGTGCTTAAGGCTAAT
CTCAAGGTTCTTCTCGGCCAAACGCCCTCGTATTCTTGAATGCTGGATTC
TGCTTGCTTTTGGGGAGAACGAGCCGCGCCGGAGGGCAGTGGTGTGTTAC
TACCGACAGCGAAGGCGGCAACGGTACCGGCGAGCGCGTTCCGCGCGACG
TCGCCGCCGCGGAACAAACCTTATATGTCCGCCGACGTGCTGTGGGGGGA
GGAGCGCGGCGGCGCTTCCTTCGTGGCGTTCGCCGACGGCCGCGCCCGCG
GAGTGTTCTCCGACCGGACAATCGTCACCCTCGGTGCCCCTTTCCCTAAG
GCAGCGTACGGAATGATCTCGCACCGCGCGCCGGTTTGTGGCGCGGCGAT
TGGGGTAGGGCGGCCCCACTCAGGCCCTGGAGAGGGGGAAGAGGAACACG
GGGAGGTAGACCGAAACGTCGAATGCGTCCTCCCGGACGGGACCGTCAGG
CGCTTCTCGCTTCTTTCGATGTCCCGCGAGGAAGCCTTTAGCAACAGGCG
AGGTGGAGCCATCTCGGGCAATCGCGGCCTTGTCCCTTGCGTCGCAGCAG
TTCGTCGCTTCGAGGTTCGGGCGCGCGCCGATCCCGCCGAGCGCCGTGCA
TCGGCGGCCCGGGAGGAGGCTGTGAGGCTGGCGGCTTCCGTCGAGCTGGA
TCGAAATCGCCGTTTCATTGAGTTGCATCGGCTGATGAGGCGCCAGGCTC
GTCCCGATCGTAGGGATACCCAGAGCGCCGCCGCTGCCGCTGAGGCCCGA
CCTTCCCCTTTGCAACGCTCGGAGGGGGAATCCCCAGCGTCGGCTCCCTA
CCAGCATCGACGCCGCGAGGGAGAGAAGGAGAAGGACTATATTGACCGCG
CTAGAATAGGGGGGGTAGTGGTGAGGGGCCGTGCGCCGACTGGGGACCTC
GAAAGGAACGCTCTCGTGGAGCGGGTGCTTAAGGCTAATCTCAAGGTTCT
TCTCGGCCAAACGCCCTCGTATTCTTGA
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