mRNA_F-serratus_M_contig848.19861.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig848.19861.1
Unique NamemRNA_F-serratus_M_contig848.19861.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: A0A6H5JG88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG88_9PHAE)

HSP 1 Score: 508 bits (1308), Expect = 1.850e-173
Identity = 273/485 (56.29%), Postives = 330/485 (68.04%), Query Frame = 2
Query:    2 MMSRALITTRFSSRFCSRF---LRKRTLHVYTLGEGFLGCLGHGDYASRDHALPVEALAHKDVKCISAGWTHSAAVC-DDGELLVWGRPFDMKQPLRIWRIQRFLPFVVRAINSLASKRELLARPVVIPIGSPPQP-----TPPSWFYDARPLASTVAAGETTATNQAPSNGADGNTTGQQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVSVACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQALDDERVTSVAVGFQQVLVLCGSGRVYGWGKSLRGQLGIGEQMVELPVPVELPGKVIDLRSGFSHAVAVLEDGDAYVWGRMQSTDVKTEGRIPVFHDQLYPRKVDVGGGRVLEAFCSSFNTLLRMEDGRMMMFGLEADTRRNVQVPVEVDLPPTRPGSFFGGFNDIILKSEEAGEL---FKVSFTSNGASVSPFRLPGIDQDRHLESVSVGWQHTVALV 1420
            +M RAL  TR S     R     RKR LHVYT GEGFLG LGHGD+++R+  LPV ALA +D++C SAGWTHSAAVC D GE+LVWGRPFD+KQPLRI RIQR  PFVV AIN+LAS RE+L  PV +P+ + P       T  + F+DARP + ++ A         PS+                                            +A SVACSAALTVVL EDG+VYCMGYNRWGQCGQG +N FT+FEPLRVGG+AL+ E+V  +AVG QQVLVLC SGRV+GWGK LRGQLG+G++ +ELP  VELPGKV+DLRSG                 +MQ T+VKT+GR+PV+HDQL+PRKVDVGGGR +EAFCSS NT+LRMEDGR++M+G EADTRR V  PVEVD+P + PGSFFGGFND I+K+  A +L    +VSFTS GA V+PF LPG+ +   ++SVSVGWQHTV LV
Sbjct:   16 IMRRALQATRSSLPSRPRHHHQSRKRALHVYTHGEGFLGALGHGDFSAREETLPVAALASRDLRCASAGWTHSAAVCRDTGEVLVWGRPFDLKQPLRINRIQRLFPFVVTAINALASSREVLPSPVPVPLIAKPSAASTASTITAAFHDARPSSYSLPA---------PSS-------------------------------------------LRANSVACSAALTVVLGEDGKVYCMGYNRWGQCGQGPENEFTVFEPLRVGGRALEREQVVKLAVGLQQVLVLCESGRVFGWGKGLRGQLGVGDETMELPEEVELPGKVVDLRSGXXXXXXXXXXXXXXXXXKMQGTEVKTDGRVPVYHDQLHPRKVDVGGGRAVEAFCSSSNTMLRMEDGRVLMWGFEADTRRTVPTPVEVDIPASEPGSFFGGFNDTIVKTTTAVDLPTFHRVSFTSAGARVTPFTLPGLAEGTRVDSVSVGWQHTVVLV 448          
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: D8LL82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL82_ECTSI)

HSP 1 Score: 501 bits (1289), Expect = 1.430e-170
Identity = 278/497 (55.94%), Postives = 323/497 (64.99%), Query Frame = 2
Query:    5 MSRALITTRFSSRFCSRF---LRKRTLHVYTLGEGFLGCLGHGDYASRDHALPVEALAHKDVKCISAGWTHSAAVC-DDGELLVWGRPFDMKQPLRIWRIQRFLPFVVRAINSLASKRELLARPVVIPIGSPPQPTPPSWFYDARPLASTVAAGETTATNQA-PSNGADGNTTGQQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVSVACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQALDDERVTSVAVGFQQVLVLCGSGRVYGWGKSLRGQLGIGEQMVELPVPVELPGKVIDLRSGFSHAVAVLEDGDAYVWGRMQSTDVKTEGRIPVFHDQLYPRKVDVGGGRVLEAFCSSFNTLLRMEDGRMMMFGLEADTRRNVQVPVEVDLPPTRPGSFFGGFNDIILK-------------SEEAG-------ELFKVSFTSNGASVSPFRLPGIDQDRHLESVSVGWQHTVALV 1420
            M RAL  TR S     R     RKR LHVYT GEGFLG LGHGD+++R+ ALPV ALA +D++C+SAGWTHSAAVC D GE+LVWGRPFD+KQPLRI RIQR  PFVV AIN+LAS RE+L  PV +P+              A P A++ A+  T A + A PS                                             +A SVACSAALTVVL EDG+VYCMGYNRWGQCGQG DNVFT+FEPLRVGG+AL+ E V  +AVGFQQVLVLC SGRV+GWGK LRGQLG+G +M+ELP  VELPGKV+D                      MQ T+VKT+GR+PV+HDQLYPRKVDVGGGR +EAFCSSFNTLLRMEDGR++M GLEADTRR V  PVEVD+P + PGSFF GFND I+K             S  AG          +VSFTS GA V+PF LPG+ +   ++SVSVGWQHTVALV
Sbjct:    1 MRRALQATRSSLPSRPRHHHQSRKRALHVYTHGEGFLGALGHGDFSAREQALPVAALASRDLRCVSAGWTHSAAVCRDTGEVLVWGRPFDLKQPLRINRIQRLFPFVVTAINALASSREVLPSPVSVPLM-------------AEPAAASTASTVTAALHDARPS-----------------------------------LHFPPTPSSLRAKSVACSAALTVVLGEDGKVYCMGYNRWGQCGQGPDNVFTVFEPLRVGGRALEREAVVKLAVGFQQVLVLCESGRVFGWGKGLRGQLGVGGEMMELPEEVELPGKVVDXXXXXXXXXXXXXXXXXXXXXXMQGTEVKTDGRVPVYHDQLYPRKVDVGGGRAVEAFCSSFNTLLRMEDGRVLMSGLEADTRRTVPTPVEVDIPASEPGSFFSGFNDTIVKTASTPVASTITDKSTAAGGTGADLPTFHRVSFTSAGARVTPFALPGVPEGTRVDSVSVGWQHTVALV 449          
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: W7T9T9_9STRA (Regulator of chromosome condensation/beta-lactamase-inhibitor protein II n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T9T9_9STRA)

HSP 1 Score: 157 bits (397), Expect = 8.950e-38
Identity = 133/463 (28.73%), Postives = 195/463 (42.12%), Query Frame = 2
Query:   41 RFCSRFLRKR-TLH--VYTLGEGFLGCLGHGDYASRDHALPVEALAHKDVKCISAGWTHSAAVCDDGELLVWGRPFDMKQPLRIWRIQRFLPFVVRAINSLASKRELLARPVVIPIGSPPQPTPPSWFYDARPLASTVAAGETTATNQAPSNGADGNTTGQQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVSVACSAALTVVLSEDGRVYCMGYNRWGQCGQGSD----------------------------NVFTIFEPLRVGGQALDDER--------------------VTSVAVGFQQVLVLCGSGRVYGWGKSLRGQLGIGEQMVE-LPVPVELPG--KVIDLRSGFSHAVAVLEDGDAYVWGRMQSTDVKTEGR---IPVFHDQLYPRKVDVGGG---RVLEAFCSSFNT--LLRMEDG-----RMMMFGLEADTRRNVQVPVEVDLP 1228
            R C  +  +R + H  +Y++GEG++G LGHGD+  R    P++ALA   +K  +AGW H+A V   G LL++GRP D+++ L +  + + LPF+VR   ++  KR                      F+D+    S     E    +       +G                                        + V VACS ALT ++   GRVYCMG N +GQCG G                              NV+T   P+    Q LD+E                     V  +A+GFQ  +    SGR + WGK  RGQLG G  +       V+LP   +V+ + SGF+HA A+ E G  ++WG+ Q    ++EG      ++ DQL PR+V++ GG    V +  C  F+T  LLR E       R+ MFG+ +  R        V LP
Sbjct:   60 RICIAYSSRRISTHTTLYSMGEGYMGTLGHGDFQDRTTLTPIDALAPYQIKDFAAGWAHTAVVSSCGRLLLFGRPHDVRKALSLRHMWQSLPFLVRIHQAM--KR----------------------FFDSPRKGSAAFLREDVLLSPRAFPLPEGE---------------------------------------RPVRVACSGALTAIIVASGRVYCMGQNTFGQCGVGGTVLIPGVGGSGGREGERPTPQKMAAADVANVWTAMVPV----QGLDEEELEESXXXXXXEKGMRRVRDPVVDIALGFQHAVCCTASGRAFAWGKGERGQLGNGVAVNHNAACRVDLPEGTRVVKVASGFNHAAALAEGGMVWIWGKWQGLGRRSEGTGKGSELYEDQLLPREVELPGGVDGSVEDVGCGHFHTSVLLRGEGTGAGAWRLFMFGMRSHIRSMEPKLTPVSLP 455          
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: A0A5D6XTS7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTS7_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.270e-24
Identity = 72/187 (38.50%), Postives = 104/187 (55.61%), Query Frame = 2
Query:  620 KAVSVACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQALDDERVTSVAVGFQQVLVLCGSGRVYGWGKSLRGQLGIGEQMVELPVP-VELPGKVID-LRSGFSHAVAVLEDGDAYVWGRMQSTDVKTEGRIPVFHDQLYPRKVDVGGGRVLEAFCSSFNTLLRMEDGRMMMFG 1174
            +A  + CSAALT+VL+E GR++  G N +GQCG   + V    EP+RV   ALD + V  VA G+Q  L +  SG V+ WGK  RGQLG G   V+ P   + L GK +  + +GF+H+ A+  DG+ +VWG++ + + K E       DQ+ PR V       L   CS F+T     D ++ + G
Sbjct:  134 RARKLVCSAALTLVLAESGRLFAFGANTFGQCGNDREGVSEP-EPVRV---ALDGDDVVDVAAGYQHALAVTRSGAVFAWGKGERGQLGFGSANVKAPQELIALKGKAVAAVSAGFNHSSALTRDGELFVWGKLLNLEGKDENG----GDQVVPRLVRTSDAVTLLQ-CSHFHTAFLTADDKIWVVG 311          
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: A0A484E934_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E934_BRELC)

HSP 1 Score: 110 bits (274), Expect = 2.760e-22
Identity = 66/191 (34.55%), Postives = 104/191 (54.45%), Query Frame = 2
Query:  632 VACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQALDDERVTSVAVGFQQVLVLCGSGRVYGWGKSLRGQLGIGEQMVELPVP-VELPGK-VIDLRSGFSHAVAVLEDGDAYVWGRMQSTDVKTEGRIPVFHDQLYPRKVDVGGGRVLEAFCSSFNTLLRMEDGRMMMFGLEADTRRN 1198
            + CSAALT +L+E G+++ +G N +GQCG G + V ++  P  V     D ++V  +A G+Q  L +  +G V+ WGK  RGQLG G    + P   + L GK ++ + +GF+++ A+ EDG+ YVWG++    +  +G      DQ+ PR V       L   CS F+T     D ++ + G     RRN
Sbjct:  143 IVCSAALTFILTECGKLFTLGANGYGQCGIGEEGV-SVQLPTHV---RFDGDKVVDIASGYQHGLAVTENGTVFCWGKGERGQLGFGSGNTDAPQELIALKGKRIVKVDAGFNYSCAITEDGELYVWGKL----LNPKGMSEANGDQITPRLVQTSDAVKLSK-CSHFHTSFITADNKIWLLGRTPSGRRN 324          
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: B7G4H9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G4H9_PHATC)

HSP 1 Score: 110 bits (275), Expect = 4.650e-22
Identity = 120/436 (27.52%), Postives = 176/436 (40.37%), Query Frame = 2
Query:   56 FLRKRTLHVYTLGEGFLGCLGHG--DYASRDHALPVEA-----LAHKDVKCISAGWTHSAAVCDDGELLVWGRPFDMKQPLRIWRIQRFLPFVVR--AINSLASKRELLARPVVIPIGSPPQPTPPSWFYDARPLASTVAAGETTATNQAPSNGADGNTTGQQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVSVACSAALTVVLSEDGRVYCMGYNRWGQCGQG--SDNVFTIFEPLR---------VGGQALDDERVTSVAVGFQQVLVLCGSGRVYGWGKSLRGQLGIG----EQMVELPVP------------VELPGKVIDLRSGFSHAVAVLEDGDAYVWGRM--------QSTDVKTEGRIPVFHDQLYPRKVDVGGGRVLEAFCSSFNTLLRMEDGRMMMFGLEADTRRNVQVPVEVDLPP 1231
            ++ +RT  VY +G G+ G  G+G  D     H    EA     +    VK IS GW H+A + +D  LL+ GRP D    LR+ R    LP  VR  AINS  ++   L    V PI    +           P     AA                    ++H+                                   SV+CSAALT +++E G+VY  G N +GQCG G  S++V+    PLR           G+      V  VA+G Q  + L   G V+ WGK  RGQLG G    E    LPV              +  G+V  + +G  H  A+ +D +  +WG+         ++  V ++ R+P     L P+     G RV    C S +T + ++DG +   G+   T+  +   V++ LPP
Sbjct:   25 WIARRTFAVYAVGSGWTGAFGNGRFDQEISGHNDEEEAGSPLKIYDGSVKDISLGWGHTAILTEDRRLLLAGRPHDFSVLLRLRR----LPLWVRNYAINSSINEFRGLDSRSVHPIALIGRLITWLAIRFKYPTTELEAA--------------------RRHSIFPELAEIALPDSEVPS------------------SVSCSAALTAIVTESGKVYAFGLNGFGQCGIGMTSNHVWNPSSPLRGLTSEFANQPRGEMEQSYPVVDVALGLQHGICLNEVGEVFCWGKGERGQLGQGLITTEAHTALPVKRAFTLGEKMKPQYQTIGQVTQIDAGMIHCAALTKDNEVLIWGKHVLPLLPGDENKKVSSDARLPYILPGL-PK-----GVRVERIACGSHHTAILLDDGSVYAAGIATHTKEPIHEAVQI-LPP 411          
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: A0A7S3XQZ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQZ6_HETAK)

HSP 1 Score: 89.4 bits (220), Expect = 1.010e-16
Identity = 67/219 (30.59%), Postives = 90/219 (41.10%), Query Frame = 2
Query:   80 VYTLGEGFLGCLGHGDYASRDHAL-PVEALAHKDVK--CISAGWTHSAAVCDDGELLVWGRPFDMKQPLRIWRIQRFLPFVVRAINSLASKRELLARPVVIPIGSPPQPTPPSWFYDARPLASTVAAGETTATNQAPSNGADGNTTGQQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVSVACSAALTVVLSEDGRVYCMGYNRWGQCGQGS 727
            + + GEGFLGCLG G++  +  +  PV  L  KD K   I++GW HSAAV   G   +WGRPFD K  LR+  +      + +  N+ +S  E+L  P V+ +  PP               +T                                                           +AV VACSA LT V++ DGRV C G NRWGQCG G+
Sbjct:   37 LLSAGEGFLGCLGTGNFEDQLISFQPVVGLP-KDEKVIAIASGWAHSAAVTQAGACYIWGRPFDFKNVLRLNNMHTASRALAQLANAFSSPEEVLLAPRVMAL--PPXXXXXXXXXXXXXXEAT-----------------------------------------------------------RAVGVACSAGLTAVVTSDGRVLCFGQNRWGQCGTGA 193          
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: A0A4W4HK67_ELEEL (RCC1 and BTB domain-containing protein 1-like n=7 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4HK67_ELEEL)

HSP 1 Score: 84.0 bits (206), Expect = 2.450e-13
Identity = 65/191 (34.03%), Postives = 99/191 (51.83%), Query Frame = 2
Query:  620 KAVSVACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPL-RVGGQALDDERVTSVAVGFQQVLVLCGSGRVYGWGKSLRGQLGIGEQMVEL-PVPVE-LPGK-VIDLRSGFSHAVAVLEDGDAYVWGRMQSTDVKTEGRIPVFHDQLYPRKVDVGGGRVLE-AFCSSFNT-LLRMEDGRMMMFG 1174
            + V VAC +  ++ L+ DG V+  GYN  GQ G GS    T  +P  R     L ++ V S+A G    + +  +G VY WG +  GQLG+G    +L P  V  L G  V+ + SG++HA+A+ ++G  Y WG      + T  +I    +QL P KV     R++E A C S +T   + + G + M+G
Sbjct:  147 RVVEVACGSHHSMALTHDGEVFAWGYNNCGQVGSGS----TANQPTPRRVSCCLQNKAVVSIACGQTSSMAVSDNGEVYCWGYNGNGQLGLGNNGNQLTPCRVAALQGLCVLQIASGYAHALALTDEGLLYSWGANTYGQLGTGNKI----NQLSPMKVMADKERIVEIAACHSTHTSAAKTQSGHVYMWG 329          
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: F7ABG8_XENTR (Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 n=4 Tax=Xenopus tropicalis TaxID=8364 RepID=F7ABG8_XENTR)

HSP 1 Score: 83.6 bits (205), Expect = 3.650e-13
Identity = 59/192 (30.73%), Postives = 95/192 (49.48%), Query Frame = 2
Query:  620 KAVSVACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQALDDERVTSVAVGFQQVLVLCGSGRVYGWGKSLRGQLGIGE---QMVELPVPVELPGKVIDLRSGFSHAVAVLEDGDAYVWGRMQSTDVKTEGRIPVFH--DQLYPRKVDVGGGRVLEAFCSSFN-TLLRMEDGRMMMFGL 1177
            K V VAC +  ++ L+ DG V+C GYN  GQ G G+    ++  P RV    L  + V S+A G    + +  +G VY WG +  GQLGIG    Q++   +    P  +I +  G++H +A+ + G  Y WG        + G++ + +  +Q  P KV      V    C S N +  + + G++ M+GL
Sbjct:  198 KVVQVACGSHHSMALTSDGEVFCWGYNNCGQVGSGTTANQSV--PRRVSA-TLQSKVVVSIAAGQSSSMAVTDNGHVYCWGYNGTGQLGIGNTGNQLMPCRLVFAHPVCIIQVVLGYAHTLALSDQGVLYAWG------ANSHGQLGIGNKSNQTAPVKVGTNERMVEVTACHSTNISAAKSQSGQVYMWGL 380          
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: UPI000FFD1C19 (RCC1 and BTB domain-containing protein 2 isoform X2 n=1 Tax=Empidonax traillii TaxID=164674 RepID=UPI000FFD1C19)

HSP 1 Score: 82.4 bits (202), Expect = 4.510e-13
Identity = 61/191 (31.94%), Postives = 94/191 (49.21%), Query Frame = 2
Query:  620 KAVSVACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQALDDERVTSVAVGFQQVLVLCGSGRVYGWGKSLRGQLGIGEQMVELPVPVELPG----KVIDLRSGFSHAVAVLEDGDAYVWGRMQSTDVKTEGRIPVFHDQLYPRKVDVGGGRVLE-AFCSSFNT-LLRMEDGRMMMFG 1174
            K + VAC +  ++VL+ DG VY  GYN  GQ G GS     I  P RV    L ++ V ++A G    + +  +G VY WG +  GQLG+G    + P P  +      +V  +  G +H + + ++G  Y WG      + T  +     +Q YP  + V   RV+E A C S NT   + + G++ M+G
Sbjct:  153 KVIEVACGSHHSMVLTSDGEVYTWGYNNSGQVGSGSTANQPI--PRRVTS-CLQNKIVINIACGQMCSMAVVENGEVYVWGYNGNGQLGLGSSGNQ-PTPCRIAALQGIRVQRVACGHAHTLVLTDEGQIYAWGSNSYGQLGTGNKS----NQSYPTSIVVDKDRVIEIAACHSANTSAAKTQSGQVYMWG 335          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JG88_9PHAE1.850e-17356.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL82_ECTSI1.430e-17055.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7T9T9_9STRA8.950e-3828.73Regulator of chromosome condensation/beta-lactamas... [more]
A0A5D6XTS7_9STRA5.270e-2438.50Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A484E934_BRELC2.760e-2234.55Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
B7G4H9_PHATC4.650e-2227.52Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S3XQZ6_HETAK1.010e-1630.59Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4W4HK67_ELEEL2.450e-1334.03RCC1 and BTB domain-containing protein 1-like n=7 ... [more]
F7ABG8_XENTR3.650e-1330.73Regulator of chromosome condensation (RCC1) and BT... [more]
UPI000FFD1C194.510e-1331.94RCC1 and BTB domain-containing protein 2 isoform X... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig848contigF-serratus_M_contig848:94719..98844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score505.4
Seed ortholog evalue3e-140
Seed eggNOG ortholog2880.D8LL82
KEGG koko:K19607
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
Ec32 ortholog descriptionRegulator of chromosome condensation, RCC1
Ec32 orthologEc-24_002600.1
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons4
Model size1768
Cds size1425
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig848.19861.1prot_F-serratus_M_contig848.19861.1Fucus serratus malepolypeptideF-serratus_M_contig848 94720..98502 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932497.1526787-UTR-F-serratus_M_contig848:94718..947191622932497.1526787-UTR-F-serratus_M_contig848:94718..94719Fucus serratus maleUTRF-serratus_M_contig848 94719..94719 +
1690964337.0134046-UTR-F-serratus_M_contig848:94718..947191690964337.0134046-UTR-F-serratus_M_contig848:94718..94719Fucus serratus maleUTRF-serratus_M_contig848 94719..94719 +
1622932497.2451134-UTR-F-serratus_M_contig848:98502..988441622932497.2451134-UTR-F-serratus_M_contig848:98502..98844Fucus serratus maleUTRF-serratus_M_contig848 98503..98844 +
1690964337.0901182-UTR-F-serratus_M_contig848:98502..988441690964337.0901182-UTR-F-serratus_M_contig848:98502..98844Fucus serratus maleUTRF-serratus_M_contig848 98503..98844 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932497.1720197-CDS-F-serratus_M_contig848:94719..956381622932497.1720197-CDS-F-serratus_M_contig848:94719..95638Fucus serratus maleCDSF-serratus_M_contig848 94720..95638 +
1690964337.027175-CDS-F-serratus_M_contig848:94719..956381690964337.027175-CDS-F-serratus_M_contig848:94719..95638Fucus serratus maleCDSF-serratus_M_contig848 94720..95638 +
1622932497.1898136-CDS-F-serratus_M_contig848:96911..971491622932497.1898136-CDS-F-serratus_M_contig848:96911..97149Fucus serratus maleCDSF-serratus_M_contig848 96912..97149 +
1690964337.0446959-CDS-F-serratus_M_contig848:96911..971491690964337.0446959-CDS-F-serratus_M_contig848:96911..97149Fucus serratus maleCDSF-serratus_M_contig848 96912..97149 +
1622932497.2065866-CDS-F-serratus_M_contig848:97375..974331622932497.2065866-CDS-F-serratus_M_contig848:97375..97433Fucus serratus maleCDSF-serratus_M_contig848 97376..97433 +
1690964337.064304-CDS-F-serratus_M_contig848:97375..974331690964337.064304-CDS-F-serratus_M_contig848:97375..97433Fucus serratus maleCDSF-serratus_M_contig848 97376..97433 +
1622932497.2255297-CDS-F-serratus_M_contig848:98292..985021622932497.2255297-CDS-F-serratus_M_contig848:98292..98502Fucus serratus maleCDSF-serratus_M_contig848 98293..98502 +
1690964337.0773575-CDS-F-serratus_M_contig848:98292..985021690964337.0773575-CDS-F-serratus_M_contig848:98292..98502Fucus serratus maleCDSF-serratus_M_contig848 98293..98502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig848.19861.1

>prot_F-serratus_M_contig848.19861.1 ID=prot_F-serratus_M_contig848.19861.1|Name=mRNA_F-serratus_M_contig848.19861.1|organism=Fucus serratus male|type=polypeptide|length=475bp
MMSRALITTRFSSRFCSRFLRKRTLHVYTLGEGFLGCLGHGDYASRDHAL
PVEALAHKDVKCISAGWTHSAAVCDDGELLVWGRPFDMKQPLRIWRIQRF
LPFVVRAINSLASKRELLARPVVIPIGSPPQPTPPSWFYDARPLASTVAA
GETTATNQAPSNGADGNTTGQQHNPTTKPPLLPDDGAAGAGAVAAAGGQP
PPLPPPKAVSVACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFE
PLRVGGQALDDERVTSVAVGFQQVLVLCGSGRVYGWGKSLRGQLGIGEQM
VELPVPVELPGKVIDLRSGFSHAVAVLEDGDAYVWGRMQSTDVKTEGRIP
VFHDQLYPRKVDVGGGRVLEAFCSSFNTLLRMEDGRMMMFGLEADTRRNV
QVPVEVDLPPTRPGSFFGGFNDIILKSEEAGELFKVSFTSNGASVSPFRL
PGIDQDRHLESVSVGWQHTVALVK*
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mRNA from alignment at F-serratus_M_contig848:94719..98844+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig848.19861.1 ID=mRNA_F-serratus_M_contig848.19861.1|Name=mRNA_F-serratus_M_contig848.19861.1|organism=Fucus serratus male|type=mRNA|length=4126bp|location=Sequence derived from alignment at F-serratus_M_contig848:94719..98844+ (Fucus serratus male)
CATGATGAGCCGCGCCCTCATCACCACTCGTTTCTCTTCCCGCTTCTGCA GTAGGTTTCTTCGCAAGCGAACTTTACACGTGTACACTCTTGGGGAAGGT TTCTTGGGCTGTCTTGGTCATGGGGACTACGCCTCTCGCGATCACGCTCT ACCGGTCGAAGCGCTCGCTCACAAGGATGTTAAATGCATCTCCGCGGGTT GGACTCACTCAGCTGCCGTCTGCGACGACGGCGAGCTGCTAGTCTGGGGA CGCCCGTTCGACATGAAGCAGCCTCTACGCATCTGGCGCATTCAGCGTTT CCTTCCGTTCGTCGTGCGCGCAATCAACTCCTTGGCCAGCAAGAGGGAGC TGCTCGCGAGACCCGTCGTGATCCCGATCGGGAGCCCTCCACAACCAACA CCTCCATCATGGTTCTACGACGCGAGGCCATTAGCATCAACAGTGGCAGC TGGTGAGACTACAGCCACGAATCAAGCACCCAGCAACGGCGCCGACGGAA ACACCACAGGTCAGCAGCACAATCCCACCACAAAGCCTCCATTGCTCCCA GATGATGGGGCTGCTGGTGCTGGTGCTGTCGCAGCTGCTGGTGGACAACC TCCACCCCTGCCTCCTCCGAAGGCTGTCAGCGTCGCATGCTCCGCGGCCC TCACTGTGGTTCTAAGCGAGGATGGTCGGGTGTACTGCATGGGCTACAAC CGGTGGGGTCAGTGTGGTCAGGGTTCAGACAACGTGTTCACGATCTTCGA GCCCTTGCGTGTGGGTGGACAGGCGCTGGACGACGAGCGAGTCACGTCTG TGGCGGTGGGGTTCCAACAGGTTTTGGTCCTCTGCGGTAGCGGTCGAGTG TATGGATGGGGCAAGTCTCTCAGAGGGCAGCTTGGTATCGGAGAACAGAT GGTCGAGCTCCCTGTACCAGGTGAAAGCGCTGCTCTTGTTTTTTGTACAT GTCTCTCGATACCTGTAGCTCCGTTCCGACCTGTAGAGGTATGAACCACC CCTCTACTCGAGTACAGCATACCGGTAAAAAACCCCACAGCAGTAACTAG CCGTACTGTAGTGAAGTGATATTGACAGTAGCTGCCGTGCACCAGTAAAA AATTACCGCAGCTGTTACCTTACCGTACTGTGGTCAAGTAATTATACAAT ATCAGTAGTTGTCGTGCACCATCAGTCGTTTTATGAGATAATTTTCAAAA ATGATCAGGGTTCGCCATCCGAATCGATCGAGGTTGCTCTCGATATTACG GATTGCTGAATCGTTTTGGCATTGGTCGTAGTCCCTTACCTTCAGGGTTG TGTCGCGATCTGGATCCCTGTTGGTCTTATTAGCGTGTTGCCGCCATGAT GTGACCCGTTGGCCTTTTTCGTGCCTGTGACCACCGAGCGGGATTAGCAT TTGATGGGTCTATGGCTGACTTGTGTCGCCGTAGTATTTCAGTTTCAAGG ACAATACGCTGAATGTTTGAAATCAGCAGCAACTAAGGTCTAGATACGTC CAGATGTATGTATGGTCATCACATATATTTTCGCAAGTATTCAAATGTAC AGATTAATAGTATAACGGCGAGCTTCTCCCCGATATTGTTCTGTTGACCC TATGTGACTACTCTGGGGGAACCGTTTTTGAAGATTTTTTTGTCCGTACA GTACATTCAAAAAGCCCCACCTAAATATTTTTACAAATTTCCCATGAACG TGTACTTTTCTGTGAACTAGAGGAAGTTTGCCTCACACAAAGTTAATTGT TTTGAAATCGGATCTGATATTTTGCGAAAAGGATTGCTCACACCGCTAGA ATATGTCTGGCCTTTATATTCTCCAAAAACGAGTCTGTTCGGATTCGACC GATATGCCGAGCGTTGCTGGTGATGACGCATTCGGTATTCTGACCACTGC ATTTTTCGATTCGAACAGGGATGGAAAGTGATATACTGTACCAAGTCATT TCATTTTGACGTTCAATTTGTCCAGAAAGTGCTGTCGATTGAGTTTCACG TACAGGATCTCCATAAAGAGCATGCTGTACGTCGAGCCGCCTCTGGTCGC CCTCAGCCGTGCTTACTTGAGCCATAATACATGTAAAAAAGTTTTGTCCC TCTCTCTGTTGTAATATTCAAGTCTGTTGTGAATCACTACTTACCCCTTC CCCTCTGCCCCTCTACCACGTTCCGCGCCTCGACGAAGGACAGTCGAACT GCCGGGCAAGGTCATAGATCTCCGGAGCGGCTTCAGCCACGCGGTTGCAG TTCTCGAGGACGGTGACGCGTACGTTTGGGGCAGGATGCAGAGCACCGAT GTCAAGACAGAAGGCCGCATTCCTGTGTTCCACGATCAGCTGTATCCACG AAAAGTGGACGTTGGTGGAGGTCGTGTCCTGGAGGCGTTTTGCTCCTCGT TCAACACCCTTCTCCGCATGGAGGATGGAAGGTGCGGAAATGTGGTACTC TCGAGTAAAATATATCGGCTGGCGGCTAGTTTTATTATGTCTTTTGATTA TGTCATGCTTCCCTCTCACCTGCTGATGACAATGTTCCCTTTACTGTATA TTTTACGGCACGATCTTGTGGAAAATTCTCACCGCTAGCTCACCATATAT ATTTTTGCTTCCGTTTGGATTGAATGGTTGTTGTGAACATTACATTTCCT ATGGCAGGATGATGATGTTTGGCTTGGAAGCAGACACGCGAAGAAACGTA CAAGTCCCCGTCGAGGTGAGGAATATGGTCACCTCAAATTTTGAATGAAG TCCCATATCTTCAGTCTGTACAAGTTTTGGAATTGTCTTGTTTGTACGAG GGTACTACAAGGTACAAGTAAAAGGCAATAGAAACGAGCTGGGACGCAAA CGCGTGGTTTACACAGGCCGCGGCATTGCTCCCACTGCCTTCAAGCGCGC TCAGGGGTGGTCCTTTTCTTGCCTACGGGTGGAAGCCCCCCATTTCATGA GGCACAAGCGCGGCGAAAAGCTCTAGATTAAACCCCAGGTTGCACGCGTT GACGCTGCTGTCGGGTTCGTCCTGACGCGGATCCGCACCGCACCTGCTCT ATATTCCCATCCTTGGGCGATGTTGTCTCTCCCGACCTGTTCCTTGTTGA TCCCTGTTCCTCTTTCGAGGGGATCAGGGAGATGCGGGGCTACGGGAAGA GAGGCCGCCGTTACGTGTCGGGGAATAACCATAGAGCATACATTCGTTTT CGAAATTTGTAATACAGGTCTAGATGCGTTCAGAATTTTCTTTGTAAACT GTTTTTGAGTAGTGATGTTTGTGTGTCATGTGGCGGATTGGAGTTATTTT TTGTCCTGAGAAAGCGTGTGTTGGTGGTGGTGACGTTTAAAAGTTGGATC TGAAATAATTGATGAGCGAGAACTGTGCATGTCCAGGTCTAGTTTTGCTG ACGGAAATCTATAAAGCGTTGCGCTTCTTTTACGACGTTTTTTTTGTCTT GCACAAAATCATCGCTTTCATCAATGTTAAATATTGCGCGTTTCCGTGCC CCTTGCCTGTATGCTTGGGTGGGTGGGTGGGTTGGGTGAATGCGCCGGTA TTCTCTATATAAATTAATCGACAGGTTGATCTGCCGCCTACGCGACCAGG GTCGTTCTTTGGCGGTTTCAACGACATCATCCTCAAGTCTGAGGAAGCAG GAGAGCTGTTCAAGGTGTCTTTCACGAGTAACGGTGCAAGCGTCTCCCCG TTTCGGCTGCCGGGAATTGACCAAGATCGACACTTGGAATCTGTGTCTGT TGGATGGCAGCATACCGTGGCTCTCGTGAAGTAGAGGTGGAGGCGATCGA TCGAGCCAGAGCATTTTTTCGCGTTTCGAGGCTTGGCCTCCCTCTTGCCT TCCGAGGGTGTTGTGGCGATATAGGTGAAAAGTGTGTGGATGATAGGCTG TTGGATTGTCGTGAGGACAAAGGATTTTTGGTGTCTCGTAGCTGAGTGTT GCGAAAGGTTGTGCACGACATACATATGTCCTACCTGAACGATGTCAGGG TTTCTGTTTAACGAAGGCTCTTTCAGAGGAAAGATGATTTTTAAAAATAT TGTCTCGCGATAAGCCCCGGCGGCGAGGGGAATCACCGTCATACTGTTCA ACTCATTCTAAACTAGAAAGTAAAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig848:94719..98844+

>mRNA_F-serratus_M_contig848.19861.1 ID=mRNA_F-serratus_M_contig848.19861.1|Name=mRNA_F-serratus_M_contig848.19861.1|organism=Fucus serratus male|type=CDS|length=2850bp|location=Sequence derived from alignment at F-serratus_M_contig848:94719..98844+ (Fucus serratus male)
ATGATGAGCCGCGCCCTCATCACCACTCGTTTCTCTTCCCGCTTCTGCAG
TAGGTTTCTTCGCAAGCGAACTTTACACGTGTACACTCTTGGGGAAGGTT
TCTTGGGCTGTCTTGGTCATGGGGACTACGCCTCTCGCGATCACGCTCTA
CCGGTCGAAGCGCTCGCTCACAAGGATGTTAAATGCATCTCCGCGGGTTG
GACTCACTCAGCTGCCGTCTGCGACGACGGCGAGCTGCTAGTCTGGGGAC
GCCCGTTCGACATGAAGCAGCCTCTACGCATCTGGCGCATTCAGCGTTTC
CTTCCGTTCGTCGTGCGCGCAATCAACTCCTTGGCCAGCAAGAGGGAGCT
GCTCGCGAGACCCGTCGTGATCCCGATCGGGAGCCCTCCACAACCAACAC
CTCCATCATGGTTCTACGACGCGAGGCCATTAGCATCAACAGTGGCAGCT
GGTGAGACTACAGCCACGAATCAAGCACCCAGCAACGGCGCCGACGGAAA
CACCACAGGTCAGCAGCACAATCCCACCACAAAGCCTCCATTGCTCCCAG
ATGATGGGGCTGCTGGTGCTGGTGCTGTCGCAGCTGCTGGTGGACAACCT
CCACCCCTGCCTCCTCCGAAGGCTGTCAGCGTCGCATGCTCCGCGGCCCT
CACTGTGGTTCTAAGCGAGGATGGTCGGGTGTACTGCATGGGCTACAACC
GGTGGGGTCAGTGTGGTCAGGGTTCAGACAACGTGTTCACGATCTTCGAG
CCCTTGCGTGTGGGTGGACAGGCGCTGGACGACGAGCGAGTCACGTCTGT
GGCGGTGGGGTTCCAACAGGTTTTGGTCCTCTGCGGTAGCGGTCGAGTGT
ATGGATGGGGCAAGTCTCTCAGAGGGCAGCTTGGTATCGGAGAACAGATG
GTCGAGCTCCCTGTACCAGATGATGAGCCGCGCCCTCATCACCACTCGTT
TCTCTTCCCGCTTCTGCAGTAGGTTTCTTCGCAAGCGAACTTTACACGTG
TACACTCTTGGGGAAGGTTTCTTGGGCTGTCTTGGTCATGGGGACTACGC
CTCTCGCGATCACGCTCTACCGGTCGAAGCGCTCGCTCACAAGGATGTTA
AATGCATCTCCGCGGGTTGGACTCACTCAGCTGCCGTCTGCGACGACGGC
GAGCTGCTAGTCTGGGGACGCCCGTTCGACATGAAGCAGCCTCTACGCAT
CTGGCGCATTCAGCGTTTCCTTCCGTTCGTCGTGCGCGCAATCAACTCCT
TGGCCAGCAAGAGGGAGCTGCTCGCGAGACCCGTCGTGATCCCGATCGGG
AGCCCTCCACAACCAACACCTCCATCATGGTTCTACGACGCGAGGCCATT
AGCATCAACAGTGGCAGCTGGTGAGACTACAGCCACGAATCAAGCACCCA
GCAACGGCGCCGACGGAAACACCACAGGTCAGCAGCACAATCCCACCACA
AAGCCTCCATTGCTCCCAGATGATGGGGCTGCTGGTGCTGGTGCTGTCGC
AGCTGCTGGTGGACAACCTCCACCCCTGCCTCCTCCGAAGGCTGTCAGCG
TCGCATGCTCCGCGGCCCTCACTGTGGTTCTAAGCGAGGATGGTCGGGTG
TACTGCATGGGCTACAACCGGTGGGGTCAGTGTGGTCAGGGTTCAGACAA
CGTGTTCACGATCTTCGAGCCCTTGCGTGTGGGTGGACAGGCGCTGGACG
ACGAGCGAGTCACGTCTGTGGCGGTGGGGTTCCAACAGGTTTTGGTCCTC
TGCGGTAGCGGTCGAGTGTATGGATGGGGCAAGTCTCTCAGAGGGCAGCT
TGGTATCGGAGAACAGATGGTCGAGCTCCCTGTACCAGTCGAACTGCCGG
GCAAGGTCATAGATCTCCGGAGCGGCTTCAGCCACGCGGTTGCAGTTCTC
GAGGACGGTGACGCGTACGTTTGGGGCAGGATGCAGAGCACCGATGTCAA
GACAGAAGGCCGCATTCCTGTGTTCCACGATCAGCTGTATCCACGAAAAG
TGGACGTTGGTGGAGGTCGTGTCCTGGAGGCGTTTTGCTCCTCGTTCAAC
ACCCTTCTCCGCATGGAGGATGGAAGTCGAACTGCCGGGCAAGGTCATAG
ATCTCCGGAGCGGCTTCAGCCACGCGGTTGCAGTTCTCGAGGACGGTGAC
GCGTACGTTTGGGGCAGGATGCAGAGCACCGATGTCAAGACAGAAGGCCG
CATTCCTGTGTTCCACGATCAGCTGTATCCACGAAAAGTGGACGTTGGTG
GAGGTCGTGTCCTGGAGGCGTTTTGCTCCTCGTTCAACACCCTTCTCCGC
ATGGAGGATGGAAGGATGATGATGTTTGGCTTGGAAGCAGACACGCGAAG
AAACGTACAAGTCCCCGTCGAGGATGATGATGTTTGGCTTGGAAGCAGAC
ACGCGAAGAAACGTACAAGTCCCCGTCGAGGTTGATCTGCCGCCTACGCG
ACCAGGGTCGTTCTTTGGCGGTTTCAACGACATCATCCTCAAGTCTGAGG
AAGCAGGAGAGCTGTTCAAGGTGTCTTTCACGAGTAACGGTGCAAGCGTC
TCCCCGTTTCGGCTGCCGGGAATTGACCAAGATCGACACTTGGAATCTGT
GTCTGTTGGATGGCAGCATACCGTGGCTCTCGTGAAGTAGGTTGATCTGC
CGCCTACGCGACCAGGGTCGTTCTTTGGCGGTTTCAACGACATCATCCTC
AAGTCTGAGGAAGCAGGAGAGCTGTTCAAGGTGTCTTTCACGAGTAACGG
TGCAAGCGTCTCCCCGTTTCGGCTGCCGGGAATTGACCAAGATCGACACT
TGGAATCTGTGTCTGTTGGATGGCAGCATACCGTGGCTCTCGTGAAGTAG
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