mRNA_F-serratus_M_contig848.19861.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: A0A6H5JG88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG88_9PHAE) HSP 1 Score: 508 bits (1308), Expect = 1.850e-173 Identity = 273/485 (56.29%), Postives = 330/485 (68.04%), Query Frame = 2
Query: 2 MMSRALITTRFSSRFCSRF---LRKRTLHVYTLGEGFLGCLGHGDYASRDHALPVEALAHKDVKCISAGWTHSAAVC-DDGELLVWGRPFDMKQPLRIWRIQRFLPFVVRAINSLASKRELLARPVVIPIGSPPQP-----TPPSWFYDARPLASTVAAGETTATNQAPSNGADGNTTGQQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVSVACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQALDDERVTSVAVGFQQVLVLCGSGRVYGWGKSLRGQLGIGEQMVELPVPVELPGKVIDLRSGFSHAVAVLEDGDAYVWGRMQSTDVKTEGRIPVFHDQLYPRKVDVGGGRVLEAFCSSFNTLLRMEDGRMMMFGLEADTRRNVQVPVEVDLPPTRPGSFFGGFNDIILKSEEAGEL---FKVSFTSNGASVSPFRLPGIDQDRHLESVSVGWQHTVALV 1420
+M RAL TR S R RKR LHVYT GEGFLG LGHGD+++R+ LPV ALA +D++C SAGWTHSAAVC D GE+LVWGRPFD+KQPLRI RIQR PFVV AIN+LAS RE+L PV +P+ + P T + F+DARP + ++ A PS+ +A SVACSAALTVVL EDG+VYCMGYNRWGQCGQG +N FT+FEPLRVGG+AL+ E+V +AVG QQVLVLC SGRV+GWGK LRGQLG+G++ +ELP VELPGKV+DLRSG +MQ T+VKT+GR+PV+HDQL+PRKVDVGGGR +EAFCSS NT+LRMEDGR++M+G EADTRR V PVEVD+P + PGSFFGGFND I+K+ A +L +VSFTS GA V+PF LPG+ + ++SVSVGWQHTV LV
Sbjct: 16 IMRRALQATRSSLPSRPRHHHQSRKRALHVYTHGEGFLGALGHGDFSAREETLPVAALASRDLRCASAGWTHSAAVCRDTGEVLVWGRPFDLKQPLRINRIQRLFPFVVTAINALASSREVLPSPVPVPLIAKPSAASTASTITAAFHDARPSSYSLPA---------PSS-------------------------------------------LRANSVACSAALTVVLGEDGKVYCMGYNRWGQCGQGPENEFTVFEPLRVGGRALEREQVVKLAVGLQQVLVLCESGRVFGWGKGLRGQLGVGDETMELPEEVELPGKVVDLRSGXXXXXXXXXXXXXXXXXKMQGTEVKTDGRVPVYHDQLHPRKVDVGGGRAVEAFCSSSNTMLRMEDGRVLMWGFEADTRRTVPTPVEVDIPASEPGSFFGGFNDTIVKTTTAVDLPTFHRVSFTSAGARVTPFTLPGLAEGTRVDSVSVGWQHTVVLV 448
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: D8LL82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL82_ECTSI) HSP 1 Score: 501 bits (1289), Expect = 1.430e-170 Identity = 278/497 (55.94%), Postives = 323/497 (64.99%), Query Frame = 2
Query: 5 MSRALITTRFSSRFCSRF---LRKRTLHVYTLGEGFLGCLGHGDYASRDHALPVEALAHKDVKCISAGWTHSAAVC-DDGELLVWGRPFDMKQPLRIWRIQRFLPFVVRAINSLASKRELLARPVVIPIGSPPQPTPPSWFYDARPLASTVAAGETTATNQA-PSNGADGNTTGQQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVSVACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQALDDERVTSVAVGFQQVLVLCGSGRVYGWGKSLRGQLGIGEQMVELPVPVELPGKVIDLRSGFSHAVAVLEDGDAYVWGRMQSTDVKTEGRIPVFHDQLYPRKVDVGGGRVLEAFCSSFNTLLRMEDGRMMMFGLEADTRRNVQVPVEVDLPPTRPGSFFGGFNDIILK-------------SEEAG-------ELFKVSFTSNGASVSPFRLPGIDQDRHLESVSVGWQHTVALV 1420
M RAL TR S R RKR LHVYT GEGFLG LGHGD+++R+ ALPV ALA +D++C+SAGWTHSAAVC D GE+LVWGRPFD+KQPLRI RIQR PFVV AIN+LAS RE+L PV +P+ A P A++ A+ T A + A PS +A SVACSAALTVVL EDG+VYCMGYNRWGQCGQG DNVFT+FEPLRVGG+AL+ E V +AVGFQQVLVLC SGRV+GWGK LRGQLG+G +M+ELP VELPGKV+D MQ T+VKT+GR+PV+HDQLYPRKVDVGGGR +EAFCSSFNTLLRMEDGR++M GLEADTRR V PVEVD+P + PGSFF GFND I+K S AG +VSFTS GA V+PF LPG+ + ++SVSVGWQHTVALV
Sbjct: 1 MRRALQATRSSLPSRPRHHHQSRKRALHVYTHGEGFLGALGHGDFSAREQALPVAALASRDLRCVSAGWTHSAAVCRDTGEVLVWGRPFDLKQPLRINRIQRLFPFVVTAINALASSREVLPSPVSVPLM-------------AEPAAASTASTVTAALHDARPS-----------------------------------LHFPPTPSSLRAKSVACSAALTVVLGEDGKVYCMGYNRWGQCGQGPDNVFTVFEPLRVGGRALEREAVVKLAVGFQQVLVLCESGRVFGWGKGLRGQLGVGGEMMELPEEVELPGKVVDXXXXXXXXXXXXXXXXXXXXXXMQGTEVKTDGRVPVYHDQLYPRKVDVGGGRAVEAFCSSFNTLLRMEDGRVLMSGLEADTRRTVPTPVEVDIPASEPGSFFSGFNDTIVKTASTPVASTITDKSTAAGGTGADLPTFHRVSFTSAGARVTPFALPGVPEGTRVDSVSVGWQHTVALV 449
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: W7T9T9_9STRA (Regulator of chromosome condensation/beta-lactamase-inhibitor protein II n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T9T9_9STRA) HSP 1 Score: 157 bits (397), Expect = 8.950e-38 Identity = 133/463 (28.73%), Postives = 195/463 (42.12%), Query Frame = 2
Query: 41 RFCSRFLRKR-TLH--VYTLGEGFLGCLGHGDYASRDHALPVEALAHKDVKCISAGWTHSAAVCDDGELLVWGRPFDMKQPLRIWRIQRFLPFVVRAINSLASKRELLARPVVIPIGSPPQPTPPSWFYDARPLASTVAAGETTATNQAPSNGADGNTTGQQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVSVACSAALTVVLSEDGRVYCMGYNRWGQCGQGSD----------------------------NVFTIFEPLRVGGQALDDER--------------------VTSVAVGFQQVLVLCGSGRVYGWGKSLRGQLGIGEQMVE-LPVPVELPG--KVIDLRSGFSHAVAVLEDGDAYVWGRMQSTDVKTEGR---IPVFHDQLYPRKVDVGGG---RVLEAFCSSFNT--LLRMEDG-----RMMMFGLEADTRRNVQVPVEVDLP 1228
R C + +R + H +Y++GEG++G LGHGD+ R P++ALA +K +AGW H+A V G LL++GRP D+++ L + + + LPF+VR ++ KR F+D+ S E + +G + V VACS ALT ++ GRVYCMG N +GQCG G NV+T P+ Q LD+E V +A+GFQ + SGR + WGK RGQLG G + V+LP +V+ + SGF+HA A+ E G ++WG+ Q ++EG ++ DQL PR+V++ GG V + C F+T LLR E R+ MFG+ + R V LP
Sbjct: 60 RICIAYSSRRISTHTTLYSMGEGYMGTLGHGDFQDRTTLTPIDALAPYQIKDFAAGWAHTAVVSSCGRLLLFGRPHDVRKALSLRHMWQSLPFLVRIHQAM--KR----------------------FFDSPRKGSAAFLREDVLLSPRAFPLPEGE---------------------------------------RPVRVACSGALTAIIVASGRVYCMGQNTFGQCGVGGTVLIPGVGGSGGREGERPTPQKMAAADVANVWTAMVPV----QGLDEEELEESXXXXXXEKGMRRVRDPVVDIALGFQHAVCCTASGRAFAWGKGERGQLGNGVAVNHNAACRVDLPEGTRVVKVASGFNHAAALAEGGMVWIWGKWQGLGRRSEGTGKGSELYEDQLLPREVELPGGVDGSVEDVGCGHFHTSVLLRGEGTGAGAWRLFMFGMRSHIRSMEPKLTPVSLP 455
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: A0A5D6XTS7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTS7_9STRA) HSP 1 Score: 115 bits (287), Expect = 5.270e-24 Identity = 72/187 (38.50%), Postives = 104/187 (55.61%), Query Frame = 2
Query: 620 KAVSVACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQALDDERVTSVAVGFQQVLVLCGSGRVYGWGKSLRGQLGIGEQMVELPVP-VELPGKVID-LRSGFSHAVAVLEDGDAYVWGRMQSTDVKTEGRIPVFHDQLYPRKVDVGGGRVLEAFCSSFNTLLRMEDGRMMMFG 1174
+A + CSAALT+VL+E GR++ G N +GQCG + V EP+RV ALD + V VA G+Q L + SG V+ WGK RGQLG G V+ P + L GK + + +GF+H+ A+ DG+ +VWG++ + + K E DQ+ PR V L CS F+T D ++ + G
Sbjct: 134 RARKLVCSAALTLVLAESGRLFAFGANTFGQCGNDREGVSEP-EPVRV---ALDGDDVVDVAAGYQHALAVTRSGAVFAWGKGERGQLGFGSANVKAPQELIALKGKAVAAVSAGFNHSSALTRDGELFVWGKLLNLEGKDENG----GDQVVPRLVRTSDAVTLLQ-CSHFHTAFLTADDKIWVVG 311
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: A0A484E934_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E934_BRELC) HSP 1 Score: 110 bits (274), Expect = 2.760e-22 Identity = 66/191 (34.55%), Postives = 104/191 (54.45%), Query Frame = 2
Query: 632 VACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQALDDERVTSVAVGFQQVLVLCGSGRVYGWGKSLRGQLGIGEQMVELPVP-VELPGK-VIDLRSGFSHAVAVLEDGDAYVWGRMQSTDVKTEGRIPVFHDQLYPRKVDVGGGRVLEAFCSSFNTLLRMEDGRMMMFGLEADTRRN 1198
+ CSAALT +L+E G+++ +G N +GQCG G + V ++ P V D ++V +A G+Q L + +G V+ WGK RGQLG G + P + L GK ++ + +GF+++ A+ EDG+ YVWG++ + +G DQ+ PR V L CS F+T D ++ + G RRN
Sbjct: 143 IVCSAALTFILTECGKLFTLGANGYGQCGIGEEGV-SVQLPTHV---RFDGDKVVDIASGYQHGLAVTENGTVFCWGKGERGQLGFGSGNTDAPQELIALKGKRIVKVDAGFNYSCAITEDGELYVWGKL----LNPKGMSEANGDQITPRLVQTSDAVKLSK-CSHFHTSFITADNKIWLLGRTPSGRRN 324
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: B7G4H9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G4H9_PHATC) HSP 1 Score: 110 bits (275), Expect = 4.650e-22 Identity = 120/436 (27.52%), Postives = 176/436 (40.37%), Query Frame = 2
Query: 56 FLRKRTLHVYTLGEGFLGCLGHG--DYASRDHALPVEA-----LAHKDVKCISAGWTHSAAVCDDGELLVWGRPFDMKQPLRIWRIQRFLPFVVR--AINSLASKRELLARPVVIPIGSPPQPTPPSWFYDARPLASTVAAGETTATNQAPSNGADGNTTGQQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVSVACSAALTVVLSEDGRVYCMGYNRWGQCGQG--SDNVFTIFEPLR---------VGGQALDDERVTSVAVGFQQVLVLCGSGRVYGWGKSLRGQLGIG----EQMVELPVP------------VELPGKVIDLRSGFSHAVAVLEDGDAYVWGRM--------QSTDVKTEGRIPVFHDQLYPRKVDVGGGRVLEAFCSSFNTLLRMEDGRMMMFGLEADTRRNVQVPVEVDLPP 1231
++ +RT VY +G G+ G G+G D H EA + VK IS GW H+A + +D LL+ GRP D LR+ R LP VR AINS ++ L V PI + P AA ++H+ SV+CSAALT +++E G+VY G N +GQCG G S++V+ PLR G+ V VA+G Q + L G V+ WGK RGQLG G E LPV + G+V + +G H A+ +D + +WG+ ++ V ++ R+P L P+ G RV C S +T + ++DG + G+ T+ + V++ LPP
Sbjct: 25 WIARRTFAVYAVGSGWTGAFGNGRFDQEISGHNDEEEAGSPLKIYDGSVKDISLGWGHTAILTEDRRLLLAGRPHDFSVLLRLRR----LPLWVRNYAINSSINEFRGLDSRSVHPIALIGRLITWLAIRFKYPTTELEAA--------------------RRHSIFPELAEIALPDSEVPS------------------SVSCSAALTAIVTESGKVYAFGLNGFGQCGIGMTSNHVWNPSSPLRGLTSEFANQPRGEMEQSYPVVDVALGLQHGICLNEVGEVFCWGKGERGQLGQGLITTEAHTALPVKRAFTLGEKMKPQYQTIGQVTQIDAGMIHCAALTKDNEVLIWGKHVLPLLPGDENKKVSSDARLPYILPGL-PK-----GVRVERIACGSHHTAILLDDGSVYAAGIATHTKEPIHEAVQI-LPP 411
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: A0A7S3XQZ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQZ6_HETAK) HSP 1 Score: 89.4 bits (220), Expect = 1.010e-16 Identity = 67/219 (30.59%), Postives = 90/219 (41.10%), Query Frame = 2
Query: 80 VYTLGEGFLGCLGHGDYASRDHAL-PVEALAHKDVK--CISAGWTHSAAVCDDGELLVWGRPFDMKQPLRIWRIQRFLPFVVRAINSLASKRELLARPVVIPIGSPPQPTPPSWFYDARPLASTVAAGETTATNQAPSNGADGNTTGQQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVSVACSAALTVVLSEDGRVYCMGYNRWGQCGQGS 727
+ + GEGFLGCLG G++ + + PV L KD K I++GW HSAAV G +WGRPFD K LR+ + + + N+ +S E+L P V+ + PP +T +AV VACSA LT V++ DGRV C G NRWGQCG G+
Sbjct: 37 LLSAGEGFLGCLGTGNFEDQLISFQPVVGLP-KDEKVIAIASGWAHSAAVTQAGACYIWGRPFDFKNVLRLNNMHTASRALAQLANAFSSPEEVLLAPRVMAL--PPXXXXXXXXXXXXXXEAT-----------------------------------------------------------RAVGVACSAGLTAVVTSDGRVLCFGQNRWGQCGTGA 193
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: A0A4W4HK67_ELEEL (RCC1 and BTB domain-containing protein 1-like n=7 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4HK67_ELEEL) HSP 1 Score: 84.0 bits (206), Expect = 2.450e-13 Identity = 65/191 (34.03%), Postives = 99/191 (51.83%), Query Frame = 2
Query: 620 KAVSVACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPL-RVGGQALDDERVTSVAVGFQQVLVLCGSGRVYGWGKSLRGQLGIGEQMVEL-PVPVE-LPGK-VIDLRSGFSHAVAVLEDGDAYVWGRMQSTDVKTEGRIPVFHDQLYPRKVDVGGGRVLE-AFCSSFNT-LLRMEDGRMMMFG 1174
+ V VAC + ++ L+ DG V+ GYN GQ G GS T +P R L ++ V S+A G + + +G VY WG + GQLG+G +L P V L G V+ + SG++HA+A+ ++G Y WG + T +I +QL P KV R++E A C S +T + + G + M+G
Sbjct: 147 RVVEVACGSHHSMALTHDGEVFAWGYNNCGQVGSGS----TANQPTPRRVSCCLQNKAVVSIACGQTSSMAVSDNGEVYCWGYNGNGQLGLGNNGNQLTPCRVAALQGLCVLQIASGYAHALALTDEGLLYSWGANTYGQLGTGNKI----NQLSPMKVMADKERIVEIAACHSTHTSAAKTQSGHVYMWG 329
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: F7ABG8_XENTR (Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 n=4 Tax=Xenopus tropicalis TaxID=8364 RepID=F7ABG8_XENTR) HSP 1 Score: 83.6 bits (205), Expect = 3.650e-13 Identity = 59/192 (30.73%), Postives = 95/192 (49.48%), Query Frame = 2
Query: 620 KAVSVACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQALDDERVTSVAVGFQQVLVLCGSGRVYGWGKSLRGQLGIGE---QMVELPVPVELPGKVIDLRSGFSHAVAVLEDGDAYVWGRMQSTDVKTEGRIPVFH--DQLYPRKVDVGGGRVLEAFCSSFN-TLLRMEDGRMMMFGL 1177
K V VAC + ++ L+ DG V+C GYN GQ G G+ ++ P RV L + V S+A G + + +G VY WG + GQLGIG Q++ + P +I + G++H +A+ + G Y WG + G++ + + +Q P KV V C S N + + + G++ M+GL
Sbjct: 198 KVVQVACGSHHSMALTSDGEVFCWGYNNCGQVGSGTTANQSV--PRRVSA-TLQSKVVVSIAAGQSSSMAVTDNGHVYCWGYNGTGQLGIGNTGNQLMPCRLVFAHPVCIIQVVLGYAHTLALSDQGVLYAWG------ANSHGQLGIGNKSNQTAPVKVGTNERMVEVTACHSTNISAAKSQSGQVYMWGL 380
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Match: UPI000FFD1C19 (RCC1 and BTB domain-containing protein 2 isoform X2 n=1 Tax=Empidonax traillii TaxID=164674 RepID=UPI000FFD1C19) HSP 1 Score: 82.4 bits (202), Expect = 4.510e-13 Identity = 61/191 (31.94%), Postives = 94/191 (49.21%), Query Frame = 2
Query: 620 KAVSVACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQALDDERVTSVAVGFQQVLVLCGSGRVYGWGKSLRGQLGIGEQMVELPVPVELPG----KVIDLRSGFSHAVAVLEDGDAYVWGRMQSTDVKTEGRIPVFHDQLYPRKVDVGGGRVLE-AFCSSFNT-LLRMEDGRMMMFG 1174
K + VAC + ++VL+ DG VY GYN GQ G GS I P RV L ++ V ++A G + + +G VY WG + GQLG+G + P P + +V + G +H + + ++G Y WG + T + +Q YP + V RV+E A C S NT + + G++ M+G
Sbjct: 153 KVIEVACGSHHSMVLTSDGEVYTWGYNNSGQVGSGSTANQPI--PRRVTS-CLQNKIVINIACGQMCSMAVVENGEVYVWGYNGNGQLGLGSSGNQ-PTPCRIAALQGIRVQRVACGHAHTLVLTDEGQIYAWGSNSYGQLGTGNKS----NQSYPTSIVVDKDRVIEIAACHSANTSAAKTQSGQVYMWG 335 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig848.19861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig848.19861.1 >prot_F-serratus_M_contig848.19861.1 ID=prot_F-serratus_M_contig848.19861.1|Name=mRNA_F-serratus_M_contig848.19861.1|organism=Fucus serratus male|type=polypeptide|length=475bp MMSRALITTRFSSRFCSRFLRKRTLHVYTLGEGFLGCLGHGDYASRDHALback to top mRNA from alignment at F-serratus_M_contig848:94719..98844+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig848.19861.1 ID=mRNA_F-serratus_M_contig848.19861.1|Name=mRNA_F-serratus_M_contig848.19861.1|organism=Fucus serratus male|type=mRNA|length=4126bp|location=Sequence derived from alignment at F-serratus_M_contig848:94719..98844+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig848:94719..98844+ >mRNA_F-serratus_M_contig848.19861.1 ID=mRNA_F-serratus_M_contig848.19861.1|Name=mRNA_F-serratus_M_contig848.19861.1|organism=Fucus serratus male|type=CDS|length=2850bp|location=Sequence derived from alignment at F-serratus_M_contig848:94719..98844+ (Fucus serratus male)back to top |