mRNA_F-serratus_M_contig8472.19857.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8472.19857.1
Unique NamemRNA_F-serratus_M_contig8472.19857.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: A0A6H5JEW8_9PHAE (53EXOc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEW8_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.010e-14
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:    1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDLELQVRRRAAGSRSL 150
            KPRYVAMAFDVGRETTFRR ++P YKAQRKP+P+DL LQ+    A S +L
Sbjct:   65 KPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEAL 114          
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: A0A835ZC56_9STRA (5'-3' exonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC56_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 9.920e-7
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1
Query:    1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDLELQV 120
            +PRY+A+AFDV R +TFRR + P YKA R P P DL LQ+
Sbjct:  113 QPRYLAVAFDVDRNSTFRRQLMPTYKAHRPPHPRDLLLQL 152          
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: A0A829YDL9_9GAMM (Exodeoxyribonuclease IX n=4 Tax=Steroidobacter TaxID=469322 RepID=A0A829YDL9_9GAMM)

HSP 1 Score: 52.0 bits (123), Expect = 2.400e-6
Identity = 20/39 (51.28%), Postives = 31/39 (79.49%), Query Frame = 1
Query:    1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDLELQ 117
            +P ++A+AFD G  T+FR+ ++PAYKA R+P P+DL+ Q
Sbjct:   58 RPEHIAVAFDAGLVTSFRKRLYPAYKANREPAPVDLKRQ 96          
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: A0A353MEJ4_9DELT (Ribonuclease H n=2 Tax=Geobacteraceae TaxID=213422 RepID=A0A353MEJ4_9DELT)

HSP 1 Score: 49.3 bits (116), Expect = 2.270e-5
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query:    1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDLELQV 120
            +P Y A+ FD  RE TFRR ++PAYKA R+ +P DL LQ+
Sbjct:   52 RPEYFAVVFDPPREETFRRDIYPAYKAHREAVPEDLLLQL 91          
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: A0A1W9QFG2_9DELT (DNA polymerase I n=1 Tax=Sorangiineae bacterium NIC37A_2 TaxID=1970199 RepID=A0A1W9QFG2_9DELT)

HSP 1 Score: 49.3 bits (116), Expect = 2.290e-5
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDLELQVRRRAAGSRSLDLWI 162
            +P  +A+A D GRET FRR ++PAYKA R P P DL +Q++R  A  R+  L +
Sbjct:   64 EPALLAVAMDSGRET-FRREIYPAYKATRPPAPPDLRIQMQRAEAIVRAWGLTV 116          
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: A0A7D7VJI8_9GAMM (Flap endonuclease n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7D7VJI8_9GAMM)

HSP 1 Score: 48.9 bits (115), Expect = 2.990e-5
Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = 1
Query:    1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDLELQVR 123
            KP+YVA  FD   +++FR  MFP YKA R P PI+L+ Q +
Sbjct:   51 KPKYVAFTFDESLKSSFRNEMFPEYKANRDPAPIELKRQFK 91          
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: UPI0019347F8C (Uncharacterized protein n=2 Tax=Steroidobacter gossypii TaxID=2805490 RepID=UPI0019347F8C)

HSP 1 Score: 48.9 bits (115), Expect = 3.010e-5
Identity = 22/49 (44.90%), Postives = 34/49 (69.39%), Query Frame = 1
Query:    1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDLE---LQVRRRAAG 138
            +P ++A+AFD    T+FR  ++PAYKA R+P P++L+   LQ +R  AG
Sbjct:   58 RPEHIAVAFDASLVTSFRNRLYPAYKANREPAPVELKRQFLQCQRVCAG 106          
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: UPI00198C550E (Exodeoxyribonuclease IX n=1 Tax=Candidatus Obscuribacterales bacterium TaxID=2364082 RepID=UPI00198C550E)

HSP 1 Score: 48.9 bits (115), Expect = 3.020e-5
Identity = 19/39 (48.72%), Postives = 29/39 (74.36%), Query Frame = 1
Query:    1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDLELQ 117
            +P ++A+AFD    T+FR  ++PAYKA R+P P+DL+ Q
Sbjct:   60 RPSHIAVAFDASLTTSFRNRLYPAYKANREPAPVDLKKQ 98          
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: UPI00199229E3 (Exodeoxyribonuclease IX n=2 Tax=Luteimonas terricola TaxID=645597 RepID=UPI00199229E3)

HSP 1 Score: 48.9 bits (115), Expect = 3.040e-5
Identity = 19/39 (48.72%), Postives = 30/39 (76.92%), Query Frame = 1
Query:    1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDLELQ 117
            +PR++A+AFD   ++ FR A++PAYKA R P P++L+ Q
Sbjct:   62 RPRHIAIAFDEALDSCFRNALYPAYKANRDPAPVELKRQ 100          
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: A0A2N2FWJ9_9DELT (Ribonuclease H n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-4 TaxID=2013754 RepID=A0A2N2FWJ9_9DELT)

HSP 1 Score: 48.5 bits (114), Expect = 4.250e-5
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1
Query:    1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDL 108
            +P Y+A+  D  RE TFRRA++PAYKAQR  +P DL
Sbjct:   52 RPDYLAVVLDGPREETFRRALYPAYKAQRDAVPADL 87          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JEW8_9PHAE1.010e-1470.0053EXOc domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835ZC56_9STRA9.920e-760.005'-3' exonuclease n=1 Tax=Tribonema minus TaxID=30... [more]
A0A829YDL9_9GAMM2.400e-651.28Exodeoxyribonuclease IX n=4 Tax=Steroidobacter Tax... [more]
A0A353MEJ4_9DELT2.270e-555.00Ribonuclease H n=2 Tax=Geobacteraceae TaxID=213422... [more]
A0A1W9QFG2_9DELT2.290e-548.15DNA polymerase I n=1 Tax=Sorangiineae bacterium NI... [more]
A0A7D7VJI8_9GAMM2.990e-551.22Flap endonuclease n=1 Tax=Gammaproteobacteria bact... [more]
UPI0019347F8C3.010e-544.90Uncharacterized protein n=2 Tax=Steroidobacter gos... [more]
UPI00198C550E3.020e-548.72Exodeoxyribonuclease IX n=1 Tax=Candidatus Obscuri... [more]
UPI00199229E33.040e-548.72Exodeoxyribonuclease IX n=2 Tax=Luteimonas terrico... [more]
A0A2N2FWJ9_9DELT4.250e-558.33Ribonuclease H n=1 Tax=Deltaproteobacteria bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8472contigF-serratus_M_contig8472:507..668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size144
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932495.5460644-CDS-F-serratus_M_contig8472:506..6501622932495.5460644-CDS-F-serratus_M_contig8472:506..650Fucus serratus maleCDSF-serratus_M_contig8472 507..650 -
1690964336.4165666-CDS-F-serratus_M_contig8472:506..6501690964336.4165666-CDS-F-serratus_M_contig8472:506..650Fucus serratus maleCDSF-serratus_M_contig8472 507..650 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932495.5691907-UTR-F-serratus_M_contig8472:650..6681622932495.5691907-UTR-F-serratus_M_contig8472:650..668Fucus serratus maleUTRF-serratus_M_contig8472 651..668 -
1690964336.4311578-UTR-F-serratus_M_contig8472:650..6681690964336.4311578-UTR-F-serratus_M_contig8472:650..668Fucus serratus maleUTRF-serratus_M_contig8472 651..668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8472.19857.1prot_F-serratus_M_contig8472.19857.1Fucus serratus malepolypeptideF-serratus_M_contig8472 507..650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8472.19857.1

>prot_F-serratus_M_contig8472.19857.1 ID=prot_F-serratus_M_contig8472.19857.1|Name=mRNA_F-serratus_M_contig8472.19857.1|organism=Fucus serratus male|type=polypeptide|length=48bp
MAFDVGRETTFRRAMFPAYKAQRKPIPIDLELQVRRRAAGSRSLDLWI
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mRNA from alignment at F-serratus_M_contig8472:507..668-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8472.19857.1 ID=mRNA_F-serratus_M_contig8472.19857.1|Name=mRNA_F-serratus_M_contig8472.19857.1|organism=Fucus serratus male|type=mRNA|length=162bp|location=Sequence derived from alignment at F-serratus_M_contig8472:507..668- (Fucus serratus male)
AAGCCGCGATACGTTGCCATGGCCTTCGACGTCGGCCGCGAGACCACGTT TAGGCGCGCGATGTTCCCGGCGTACAAGGCACAGCGGAAGCCGATTCCAA TCGACCTCGAGCTGCAGGTACGACGGCGAGCAGCAGGCTCTCGCTCTCTT GATTTATGGATT
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Coding sequence (CDS) from alignment at F-serratus_M_contig8472:507..668-

>mRNA_F-serratus_M_contig8472.19857.1 ID=mRNA_F-serratus_M_contig8472.19857.1|Name=mRNA_F-serratus_M_contig8472.19857.1|organism=Fucus serratus male|type=CDS|length=288bp|location=Sequence derived from alignment at F-serratus_M_contig8472:507..668- (Fucus serratus male)
ATGGCCTTCGACGTCGGCCGCGAGACCACGTTTAGGCGCGCGATGTTCCC
GGCGTACAAGGCACAGCGGAAGCCGATTCCAATCGACCTCGAGCTGCAGG
TACGACGGCGAGCAGCAGGCTCTCGCTCTCTTGATTTATGGATTATGGCC
TTCGACGTCGGCCGCGAGACCACGTTTAGGCGCGCGATGTTCCCGGCGTA
CAAGGCACAGCGGAAGCCGATTCCAATCGACCTCGAGCTGCAGGTACGAC
GGCGAGCAGCAGGCTCTCGCTCTCTTGATTTATGGATT
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