mRNA_F-serratus_M_contig847.19847.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig847.19847.1
Unique NamemRNA_F-serratus_M_contig847.19847.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig847.19847.1 vs. uniprot
Match: D7FIB1_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIB1_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 1.140e-81
Identity = 160/307 (52.12%), Postives = 197/307 (64.17%), Query Frame = 3 
Query:    3 VSILLTMMILKQKRDLGLGRTEVLCYAFAPPPVFGPADKLPREAQRAIRSFVFGNDMVCRLSLSNAYDLFRELEEVDAIEASLAQRIRYLASERRPLVSVADDGLGVVRMHVAVRYPTILRRSARSRRGGEGGSVKXXXXXSRQGEGWE--------HPVEAFVRAKLAEDFNP----KGTTACRPRGFKRRAKTATE-ALLSGGVKHDSNGGSR--SGKVTDDGHRHRYRELFIPGSVYHLRKLDVES----DEGERRFGGSGSRAT-YWMQRKPAQEFAKLLVLDTGIVDHLPKSYEDALHTLYG 863
            VSILLTMM+L++K +LGLG T VLCYAFAPPPVFGP DKL RE +RAIRSFVFGNDMVCR+SL++AY+LFR+L+EV+ I ASL QR+ YL +E RP +S+ DDG G V M VA RY TIL R+ RSR    G + +     S +G G +        HPVE FVR KLAE F      +G    R RG   R + A+E A  +G  +  S   S    G   D G   RY  L IPG++YH+RKL  ES      G       G R+  YWM+R+  +EFA+LL++DT IVDHLP +YEDALH LYG
Sbjct:  150 VSILLTMMLLRRKSELGLGSTRVLCYAFAPPPVFGPLDKLSRETKRAIRSFVFGNDMVCRMSLASAYELFRDLKEVEGIGASLPQRLGYLVNEHRPRLSIHDDGRGDVGMRVAYRYATILHRT-RSR---GGNNKRGDYRSSHRGAGGKRGAGATGGHPVEDFVRNKLAEGFTETGAARGADRKRDRGGGVRPRMASEDAWRTGREREVSKTSSECGGGGEADGGSGDRYTRLLIPGTIYHIRKLGPESAAAASAGVCSANPLGLRSKLYWMERQQPEEFARLLMVDTAIVDHLPLAYEDALHALYG 452
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BLAST of mRNA_F-serratus_M_contig847.19847.1 vs. uniprot
Match: A0A6H5JNB4_9PHAE (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB4_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 7.970e-76
Identity = 152/303 (50.17%), Postives = 190/303 (62.71%), Query Frame = 3 
Query:    3 VSILLTMMILKQKRDLGLGRTEVLCYAFAPPPVFGPADKLPREAQRAIRSFVFGNDMVCRLSLSNAYDLFRELEEVDAIEASLAQRIRYLASERRPLVSVADDGLGVVRMHVAVRYPTILRRS----ARSRRGGEGGSVKXXXXXSRQGEGWEHPVEAFVRAKLAEDFNP----KGTTACRPRGFKRRAKTATEALLSGGVKHD--SNGGSRSGKV-TDDGHRHRYRELFIPGSVYHLRKLDVES----DEGERRFGGSGSRAT-YWMQRKPAQEFAKLLVLDTGIVDHLPKSYEDALHTLYG 863
            VSILLTMM+L+++ +LGLG T VLCYAFAPPPVFGP +KL  E Q AIRSFVFGNDMV R+SL++AY+LFR+L+EV+ I ASL QR+ YL +E RP +S+ DDGLG VRM VA RY TIL R+      ++RGG   S +        G    HPVE FVR KLAE F      +G    R R      + A+E     G + +   +   R G V  D G   RY  L IPG++YH+RKL  ES      G       G R+  YWM+R+  +EF +LL++DT IVDHLP +YEDALH LYG
Sbjct:  275 VSILLTMMLLRRRSELGLGSTRVLCYAFAPPPVFGPLEKLSGETQWAIRSFVFGNDMVSRMSLASAYELFRDLKEVERIGASLPQRLGYLVNEHRPRLSIHDDGLGDVRMRVAYRYATILHRTRSRGGNNKRGGYRSSQRGAGGKRGAGATSVHPVEDFVRNKLAEGFTETGAARGAYQKRDRDGGVGPRMASEDAWRTGRELEVRKSSSERGGGVEADGGSADRYTRLLIPGTIYHIRKLGPESAAAASAGVCSENPVGLRSKLYWMERQQPEEFERLLMVDTAIVDHLPLAYEDALHALYG 577
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BLAST of mRNA_F-serratus_M_contig847.19847.1 vs. uniprot
Match: A0A7S0R525_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R525_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 8.460e-6
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 3 
Query:    6 SILLTMMILKQKRDLGLGRTEVLCYAFAPPPVFGPADKLPREAQRAIRSFVFGNDMVCRLSLSNAYDLFRELEEVDAIEASLAQRI 263
            +ILLTM++L    D      +V C+AFAPPPVF P +K+     RAI+ FV+ ND+V RLSL +   L  +++  D++      R+
Sbjct:  324 AILLTMLLLD---DPIFVTCQVECWAFAPPPVFTPLEKISPRCHRAIKCFVYRNDLVPRLSLFSVRRLCLQVKAADSMPLKAITRL 406
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig847.19847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FIB1_ECTSI1.140e-8152.12Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JNB4_9PHAE7.970e-7650.17Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S0R525_9CHLO8.460e-639.53Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig847contigF-serratus_M_contig847:98962..100902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score259.6
Seed ortholog evalue1.7e-66
Seed eggNOG ortholog2880.D7FIB1
KEGG koko:K13806
KEGG Pathwayko04723,ko04745,ko04925,map04723,map04745,map04925
Hectar predicted targeting categoryother localisation
EggNOG free text desc.retrograde trans-synaptic signaling by lipid
EggNOG OGsKOG2088@1,KOG2088@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size863
Cds size843
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig847.19847.1prot_F-serratus_M_contig847.19847.1Fucus serratus malepolypeptideF-serratus_M_contig847 98982..100902 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932493.7178285-UTR-F-serratus_M_contig847:98961..989811622932493.7178285-UTR-F-serratus_M_contig847:98961..98981Fucus serratus maleUTRF-serratus_M_contig847 98962..98981 +
1690964335.602175-UTR-F-serratus_M_contig847:98961..989811690964335.602175-UTR-F-serratus_M_contig847:98961..98981Fucus serratus maleUTRF-serratus_M_contig847 98962..98981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932493.7303605-CDS-F-serratus_M_contig847:98981..992031622932493.7303605-CDS-F-serratus_M_contig847:98981..99203Fucus serratus maleCDSF-serratus_M_contig847 98982..99203 +
1690964335.6124477-CDS-F-serratus_M_contig847:98981..992031690964335.6124477-CDS-F-serratus_M_contig847:98981..99203Fucus serratus maleCDSF-serratus_M_contig847 98982..99203 +
1622932493.7499993-CDS-F-serratus_M_contig847:99849..1003861622932493.7499993-CDS-F-serratus_M_contig847:99849..100386Fucus serratus maleCDSF-serratus_M_contig847 99850..100386 +
1690964335.6274614-CDS-F-serratus_M_contig847:99849..1003861690964335.6274614-CDS-F-serratus_M_contig847:99849..100386Fucus serratus maleCDSF-serratus_M_contig847 99850..100386 +
1622932493.770211-CDS-F-serratus_M_contig847:100818..1009021622932493.770211-CDS-F-serratus_M_contig847:100818..100902Fucus serratus maleCDSF-serratus_M_contig847 100819..100902 +
1690964335.644102-CDS-F-serratus_M_contig847:100818..1009021690964335.644102-CDS-F-serratus_M_contig847:100818..100902Fucus serratus maleCDSF-serratus_M_contig847 100819..100902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig847.19847.1

>prot_F-serratus_M_contig847.19847.1 ID=prot_F-serratus_M_contig847.19847.1|Name=mRNA_F-serratus_M_contig847.19847.1|organism=Fucus serratus male|type=polypeptide|length=281bp
MMILKQKRDLGLGRTEVLCYAFAPPPVFGPADKLPREAQRAIRSFVFGND
MVCRLSLSNAYDLFRELEEVDAIEASLAQRIRYLASERRPLVSVADDGLG
VVRMHVAVRYPTILRRSARSRRGGEGGSVKGGDGGSRQGEGWEHPVEAFV
RAKLAEDFNPKGTTACRPRGFKRRAKTATEALLSGGVKHDSNGGSRSGKV
TDDGHRHRYRELFIPGSVYHLRKLDVESDEGERRFGGSGSRATYWMQRKP
AQEFAKLLVLDTGIVDHLPKSYEDALHTLYG
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mRNA from alignment at F-serratus_M_contig847:98962..100902+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig847.19847.1 ID=mRNA_F-serratus_M_contig847.19847.1|Name=mRNA_F-serratus_M_contig847.19847.1|organism=Fucus serratus male|type=mRNA|length=1941bp|location=Sequence derived from alignment at F-serratus_M_contig847:98962..100902+ (Fucus serratus male)
GGGTTTCCATCTTGTTGACCATGATGATTCTTAAGCAGAAGAGAGACCTC
GGCCTGGGCCGCACGGAGGTGCTCTGCTACGCCTTCGCGCCACCGCCAGT
GTTCGGCCCGGCGGACAAGCTTCCGCGGGAAGCTCAGAGGGCGATTCGAT
CATTCGTGTTTGGGAACGACATGGTGTGCCGATTGTCCCTCTCGAACGCG
TACGATCTCTTCCGCGAGCTGGAAGAGGTGGACGCCATCGAGGTGGGCTC
TCTGAACAACGTTTCTCCTGGCCCAAGTCATTTCATTTCCACATGGGCAT
GTTTTATGTCTTATTTTCCTCCGGGTTGGGGGTTGGGGAGAGGGGGAGGG
TCGAGTTTTGGGGACCGTTTTGCTTTTGCTTTGAGATATCAGGTCAGCCC
CTCTTGTGGCCCCATGCTTGCTGAATCAGACAATACTTCTCTAGCTGGCT
ATTAGAATATTAGAACAGTTAACTATTACTAAATGAATCGAGGGGTGGGA
GAGAAACATAAAAAAGGAGATGAAGATATTATATAGTCCTCTTCTTTTAC
ACGATAGCTTCTCCATTTACCAGGGTTTATTTTTTCGATCTTGTCGGGAG
AAACATTCCCCAGCCAAAACGAAGTCGTTGGGAAAACAACCACGCTCACG
CCCACGCATACGCCCAAGTCCATGCCCGAGCCCATTTCTCGGAGTAAAAA
TACCAGAGACCTTTCGAAAGACTTGCCTACTTGTACTGATAACATAATAG
CAACCGTCTTATTACTGTAAGCCGTTTGTAGATAAGACTATATCGTGGCT
GTTCAGAAGGTGTTATTGAGCGCGCACACCCGCCCCTTTCGTCGCATAAT
TGTGCGATGCCACCGTATGGGAAAACTCTTCCGTCAAGGCGAGCTTGGCG
CAGCGGATCAGGTACCTGGCCAGCGAGCGACGGCCGCTGGTGAGCGTAGC
TGACGACGGCCTCGGTGTGGTCCGCATGCATGTCGCCGTTCGCTACCCCA
CGATATTGCGTCGCTCTGCGAGGTCTCGTCGAGGCGGCGAAGGCGGTAGC
GTGAAGGGTGGGGATGGGGGGAGCCGTCAGGGCGAGGGATGGGAGCATCC
TGTTGAAGCTTTCGTGCGCGCGAAGCTGGCGGAAGACTTCAACCCGAAGG
GCACCACGGCGTGTCGACCGCGGGGATTCAAGAGACGGGCGAAAACGGCC
ACGGAAGCTCTTCTTAGCGGTGGCGTCAAGCACGACAGCAACGGCGGTAG
CCGCAGCGGTAAAGTTACAGACGATGGCCACAGGCATCGATACCGGGAAC
TTTTTATCCCCGGAAGCGTGTACCATTTGAGGAAGCTTGATGTGGAGAGC
GACGAAGGCGAACGGCGCTTCGGTGGGAGCGGGAGCCGCGCGACGTACTG
GATGCAGCGAAAACCAGCACAAGAGGTACGTCGACTTGATACAATAGTCG
TTTTGTTTTTATTTTGAACCGTTAAAAGTTTAGTGTTTGCTCGCCCCCCC
CCCCCCCCCATCACGCTCTCCACCTTTTGTCCTTTTGTTTTGACTCTACC
GAAGACCGTGTGTCACGCGCGATTGTCTTGCTCCCGCGGCCAGCGGCTGG
TCGGTTCGGAGCCGGCTTCCTGCGATGAAAAAGCGAGGTCTGTGCCCCTT
ACCGAGAGCAGATAGGGGCCTCTATGATTTTTAGGCTTCATCAGGGTCTG
TTTCTCTTTGTTGAGTCTCTGTTTACAGCAGCAGACCTTTTTCTTGCCCT
GGATGTACCAGGTATCTGTGCTTGTGTGCTAAGACTTCCACACTCCGTGT
ACGTGCTTTTGTTTGTTTGTTTCTTTGGTGTTTGCCCCCCCCTCTTGCCC
CGAGCAGTTCGCGAAGCTACTCGTGTTGGACACGGGTATCGTGGACCACC
TGCCGAAGTCGTACGAAGACGCGTTGCATACCTTGTACGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig847:98962..100902+

>mRNA_F-serratus_M_contig847.19847.1 ID=mRNA_F-serratus_M_contig847.19847.1|Name=mRNA_F-serratus_M_contig847.19847.1|organism=Fucus serratus male|type=CDS|length=1686bp|location=Sequence derived from alignment at F-serratus_M_contig847:98962..100902+ (Fucus serratus male)
ATGATGATTCTTAAGCAGAAGAGAGACCTCGGCCTGGGCCGCACGGAGGT
GCTCTGCTACGCCTTCGCGCCACCGCCAGTGTTCGGCCCGGCGGACAAGC
TTCCGCGGGAAGCTCAGAGGGCGATTCGATCATTCGTGTTTGGGAACGAC
ATGGTGTGCCGATTGTCCCTCTCGAACGCGTACGATCTCTTCCGCGAGCT
GGAAGAGGTGGACGCCATCGAGATGATGATTCTTAAGCAGAAGAGAGACC
TCGGCCTGGGCCGCACGGAGGTGCTCTGCTACGCCTTCGCGCCACCGCCA
GTGTTCGGCCCGGCGGACAAGCTTCCGCGGGAAGCTCAGAGGGCGATTCG
ATCATTCGTGTTTGGGAACGACATGGTGTGCCGATTGTCCCTCTCGAACG
CGTACGATCTCTTCCGCGAGCTGGAAGAGGTGGACGCCATCGAGGCGAGC
TTGGCGCAGCGGATCAGGTACCTGGCCAGCGAGCGACGGCCGCTGGTGAG
CGTAGCTGACGACGGCCTCGGTGTGGTCCGCATGCATGTCGCCGTTCGCT
ACCCCACGATATTGCGTCGCTCTGCGAGGTCTCGTCGAGGCGGCGAAGGC
GGTAGCGTGAAGGGTGGGGATGGGGGGAGCCGTCAGGGCGAGGGATGGGA
GCATCCTGTTGAAGCTTTCGTGCGCGCGAAGCTGGCGGAAGACTTCAACC
CGAAGGGCACCACGGCGTGTCGACCGCGGGGATTCAAGAGACGGGCGAAA
ACGGCCACGGAAGCTCTTCTTAGCGGTGGCGTCAAGCACGACAGCAACGG
CGGTAGCCGCAGCGGTAAAGTTACAGACGATGGCCACAGGCATCGATACC
GGGAACTTTTTATCCCCGGAAGCGTGTACCATTTGAGGAAGCTTGATGTG
GAGAGCGACGAAGGCGAACGGCGCTTCGGTGGGAGCGGGAGCCGCGCGAC
GTACTGGATGCAGCGAAAACCAGCACAAGAGGCGAGCTTGGCGCAGCGGA
TCAGGTACCTGGCCAGCGAGCGACGGCCGCTGGTGAGCGTAGCTGACGAC
GGCCTCGGTGTGGTCCGCATGCATGTCGCCGTTCGCTACCCCACGATATT
GCGTCGCTCTGCGAGGTCTCGTCGAGGCGGCGAAGGCGGTAGCGTGAAGG
GTGGGGATGGGGGGAGCCGTCAGGGCGAGGGATGGGAGCATCCTGTTGAA
GCTTTCGTGCGCGCGAAGCTGGCGGAAGACTTCAACCCGAAGGGCACCAC
GGCGTGTCGACCGCGGGGATTCAAGAGACGGGCGAAAACGGCCACGGAAG
CTCTTCTTAGCGGTGGCGTCAAGCACGACAGCAACGGCGGTAGCCGCAGC
GGTAAAGTTACAGACGATGGCCACAGGCATCGATACCGGGAACTTTTTAT
CCCCGGAAGCGTGTACCATTTGAGGAAGCTTGATGTGGAGAGCGACGAAG
GCGAACGGCGCTTCGGTGGGAGCGGGAGCCGCGCGACGTACTGGATGCAG
CGAAAACCAGCACAAGAGTTCGCGAAGCTACTCGTGTTGGACACGGGTAT
CGTGGACCACCTGCCGAAGTCGTACGAAGACGCGTTGCATACCTTGTACG
GGTTCGCGAAGCTACTCGTGTTGGACACGGGTATCGTGGACCACCTGCCG
AAGTCGTACGAAGACGCGTTGCATACCTTGTACGGG
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