mRNA_F-serratus_M_contig8468.19843.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8468.19843.1
Unique NamemRNA_F-serratus_M_contig8468.19843.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig8468.19843.1 vs. uniprot
Match: A0A7S4EAD1_9STRA (Threonine--tRNA ligase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EAD1_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.850e-10
Identity = 26/34 (76.47%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    7 DTSEMKRPVMVHRAMLGSVERMIAVLTEHYGGKW 108
            +T+E KRP+++HRAMLGSVERM+AVLTEH+GGKW
Sbjct:  613 ETTEEKRPIIIHRAMLGSVERMMAVLTEHWGGKW 646
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BLAST of mRNA_F-serratus_M_contig8468.19843.1 vs. uniprot
Match: D8LFY0_ECTSI (Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY0_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.850e-10
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 1 
Query:   22 KRPVMVHRAMLGSVERMIAVLTEHYGGKW 108
            KRPVM+HRAMLGS+ERMIAVLTEHYGGKW
Sbjct:  578 KRPVMIHRAMLGSLERMIAVLTEHYGGKW 606
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BLAST of mRNA_F-serratus_M_contig8468.19843.1 vs. uniprot
Match: A0A2G9QLI8_LITCT (Threonyl-tRNA synthetase (Fragment) n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9QLI8_LITCT)

HSP 1 Score: 59.3 bits (142), Expect = 2.810e-10
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    7 DTSEMKRPVMVHRAMLGSVERMIAVLTEHYGGKW 108
            D  + KRPV++HRA+LGSVERMIA+LTE+YGGKW
Sbjct:   59 DGDDKKRPVIIHRAILGSVERMIAILTENYGGKW 92
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BLAST of mRNA_F-serratus_M_contig8468.19843.1 vs. uniprot
Match: A0A5N3ZYF7_PHOPY (Threonine--tRNA ligase n=7 Tax=Photinus pyralis TaxID=7054 RepID=A0A5N3ZYF7_PHOPY)

HSP 1 Score: 61.6 bits (148), Expect = 4.730e-10
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 KMDTSEMKRPVMVHRAMLGSVERMIAVLTEHYGGKW 108
            K  T E KRPV++HRA+LGSVER+ A+LTEHYGGKW
Sbjct:  575 KSPTGEKKRPVIIHRALLGSVERIFAILTEHYGGKW 610
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BLAST of mRNA_F-serratus_M_contig8468.19843.1 vs. uniprot
Match: A0A6P7VJG9_IXOSC (Threonine--tRNA ligase n=8 Tax=Ixodes TaxID=6944 RepID=A0A6P7VJG9_IXOSC)

HSP 1 Score: 61.6 bits (148), Expect = 4.730e-10
Identity = 26/34 (76.47%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    7 DTSEMKRPVMVHRAMLGSVERMIAVLTEHYGGKW 108
            +T E KRPV++HRA+LGSVERMIA+LTE+YGGKW
Sbjct:  566 ETGEKKRPVIIHRAILGSVERMIAILTENYGGKW 599
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BLAST of mRNA_F-serratus_M_contig8468.19843.1 vs. uniprot
Match: A0A7S2PI84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PI84_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.220e-10
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 KMDTSEMKRPVMVHRAMLGSVERMIAVLTEHYGGKW 108
            K +  +  RPVMVHRAMLGSVERM AVL EHYGGKW
Sbjct:   51 KEEGKQFARPVMVHRAMLGSVERMFAVLCEHYGGKW 86
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BLAST of mRNA_F-serratus_M_contig8468.19843.1 vs. uniprot
Match: A0A7S0GLA4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GLA4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 5.360e-10
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 KMDTSEMKRPVMVHRAMLGSVERMIAVLTEHYGGKW 108
            K+   E  RPVMVHRAMLGSVERM AVL EHYGGKW
Sbjct:   76 KVKGEEFTRPVMVHRAMLGSVERMFAVLCEHYGGKW 111
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BLAST of mRNA_F-serratus_M_contig8468.19843.1 vs. uniprot
Match: B8C316_THAPS (Threonine--tRNA ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C316_THAPS)

HSP 1 Score: 61.2 bits (147), Expect = 6.460e-10
Identity = 28/32 (87.50%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:   13 SEMKRPVMVHRAMLGSVERMIAVLTEHYGGKW 108
            SE  RPVMVHRAMLGSVERM AVL EHYGGKW
Sbjct:  657 SEFARPVMVHRAMLGSVERMFAVLCEHYGGKW 688
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BLAST of mRNA_F-serratus_M_contig8468.19843.1 vs. uniprot
Match: A0A8B6C5P6_MYTGA (Threonine--tRNA ligase n=4 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6C5P6_MYTGA)

HSP 1 Score: 61.2 bits (147), Expect = 6.470e-10
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    7 DTSEMKRPVMVHRAMLGSVERMIAVLTEHYGGKW 108
            +  E KRPVM+HRA+LGSVERM+AVLTE+YGGKW
Sbjct:  575 EADEKKRPVMIHRAILGSVERMVAVLTENYGGKW 608
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BLAST of mRNA_F-serratus_M_contig8468.19843.1 vs. uniprot
Match: A0A0B6Y6P5_9EUPU (Threonyl-tRNA synthetase (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6Y6P5_9EUPU)

HSP 1 Score: 57.0 bits (136), Expect = 8.350e-10
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    7 DTSEMKRPVMVHRAMLGSVERMIAVLTEHYGGKW 108
            D SE  RPVM+HRA+LGS+ERM A+LTE +GGKW
Sbjct:   34 DKSERHRPVMIHRAVLGSIERMTAILTESFGGKW 67
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8468.19843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4EAD1_9STRA1.850e-1076.47Threonine--tRNA ligase n=1 Tax=Pelagomonas calceol... [more]
D8LFY0_ECTSI1.850e-1093.10Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculo... [more]
A0A2G9QLI8_LITCT2.810e-1073.53Threonyl-tRNA synthetase (Fragment) n=1 Tax=Lithob... [more]
A0A5N3ZYF7_PHOPY4.730e-1072.22Threonine--tRNA ligase n=7 Tax=Photinus pyralis Ta... [more]
A0A6P7VJG9_IXOSC4.730e-1076.47Threonine--tRNA ligase n=8 Tax=Ixodes TaxID=6944 R... [more]
A0A7S2PI84_9STRA5.220e-1075.00Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S0GLA4_9STRA5.360e-1077.78Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B8C316_THAPS6.460e-1087.50Threonine--tRNA ligase n=1 Tax=Thalassiosira pseud... [more]
A0A8B6C5P6_MYTGA6.470e-1076.47Threonine--tRNA ligase n=4 Tax=Mytilus galloprovin... [more]
A0A0B6Y6P5_9EUPU8.350e-1070.59Threonyl-tRNA synthetase (Fragment) n=1 Tax=Arion ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8468contigF-serratus_M_contig8468:578..688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog2880.D8LFY0
KEGG rclassRC00055,RC00523
KEGG koko:K01868
KEGG ReactionR03663
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.threonyl-tRNA aminoacylation
EggNOG OGsCOG0441@1,KOG1637@2759
EC6.1.1.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons1
Model size111
Cds size108
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932492.768385-CDS-F-serratus_M_contig8468:577..6851622932492.768385-CDS-F-serratus_M_contig8468:577..685Fucus serratus maleCDSF-serratus_M_contig8468 578..685 -
1690964335.3281422-CDS-F-serratus_M_contig8468:577..6851690964335.3281422-CDS-F-serratus_M_contig8468:577..685Fucus serratus maleCDSF-serratus_M_contig8468 578..685 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932492.7881742-UTR-F-serratus_M_contig8468:685..6881622932492.7881742-UTR-F-serratus_M_contig8468:685..688Fucus serratus maleUTRF-serratus_M_contig8468 686..688 -
1690964335.3449802-UTR-F-serratus_M_contig8468:685..6881690964335.3449802-UTR-F-serratus_M_contig8468:685..688Fucus serratus maleUTRF-serratus_M_contig8468 686..688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8468.19843.1prot_F-serratus_M_contig8468.19843.1Fucus serratus malepolypeptideF-serratus_M_contig8468 578..685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8468.19843.1

>prot_F-serratus_M_contig8468.19843.1 ID=prot_F-serratus_M_contig8468.19843.1|Name=mRNA_F-serratus_M_contig8468.19843.1|organism=Fucus serratus male|type=polypeptide|length=36bp
MDTSEMKRPVMVHRAMLGSVERMIAVLTEHYGGKW*
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mRNA from alignment at F-serratus_M_contig8468:578..688-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8468.19843.1 ID=mRNA_F-serratus_M_contig8468.19843.1|Name=mRNA_F-serratus_M_contig8468.19843.1|organism=Fucus serratus male|type=mRNA|length=111bp|location=Sequence derived from alignment at F-serratus_M_contig8468:578..688- (Fucus serratus male)
AAGATGGACACCAGTGAGATGAAACGACCCGTAATGGTTCATCGCGCCAT
GTTGGGGTCGGTGGAGAGAATGATCGCTGTGCTCACGGAGCACTATGGGG
GCAAGTGGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig8468:578..688-

>mRNA_F-serratus_M_contig8468.19843.1 ID=mRNA_F-serratus_M_contig8468.19843.1|Name=mRNA_F-serratus_M_contig8468.19843.1|organism=Fucus serratus male|type=CDS|length=216bp|location=Sequence derived from alignment at F-serratus_M_contig8468:578..688- (Fucus serratus male)
ATGGACACCAGTGAGATGAAACGACCCGTAATGGTTCATCGCGCCATGTT
GGGGTCGGTGGAGAGAATGATCGCTGTGCTCACGGAGCACTATGGGGGCA
AGTGGTGAATGGACACCAGTGAGATGAAACGACCCGTAATGGTTCATCGC
GCCATGTTGGGGTCGGTGGAGAGAATGATCGCTGTGCTCACGGAGCACTA
TGGGGGCAAGTGGTGA
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