mRNA_F-serratus_M_contig846.19836.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 148 bits (373), Expect = 1.680e-38 Identity = 75/148 (50.68%), Postives = 98/148 (66.22%), Query Frame = 1
Query: 13 VYELVPSPSVPAGQKVVGLRWFNKIKADGLFKSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYETHDTSGVLFVMKLKESLYSLRLSLKHWFGTMDDHLSNIGFRLLKTD 456
VY+LVP VP G V+G +W K+K + K+RLV GW QVPG DC GTFAP C L+S R V AIAAE + +V+ L+V+T+FL AD+EE V+V+MA GYE + + VMKL++SL L S + W T+D L IGF LK+D
Sbjct: 333 VYKLVPRTDVPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSD 480
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE) HSP 1 Score: 127 bits (319), Expect = 1.060e-33 Identity = 70/153 (45.75%), Postives = 95/153 (62.09%), Query Frame = 1
Query: 1 KKQGVYELVPSPSVPAGQKVVGLRWFNKIKADGLFKSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYE-THDTSGVLFVMKLKESLYSLRLSLKHWFGTMDDHLSNIGFRLLKTD 456
K V +LVP S+P G K +G RW K+KA G+ K+RL V GW Q GID GT+AP S ++AIAAE Y V ++V T+FL ++VEEEVYV+ A GYE T + +G+ VMKLK+SLY L+ S +++ + IGF L +D
Sbjct: 21 KDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLTVQGWGQRYGIDYGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSD 173
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 133 bits (334), Expect = 3.750e-33 Identity = 71/153 (46.41%), Postives = 97/153 (63.40%), Query Frame = 1
Query: 1 KKQGVYELVPSPSVPAGQKVVGLRWFNKIKADGLFKSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYE-THDTSGVLFVMKLKESLYSLRLSLKHWFGTMDDHLSNIGFRLLKTD 456
K V +LVP S+P G K +G RW K+KA G+ K+RL+V GW Q GIDC GT+AP S ++AIAAE Y V ++V T+FL ++VEEEVYV+ A GYE T + +G+ VMKLK+SLY L+ S +++ + IGF L +D
Sbjct: 917 KDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSD 1069
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A6H5JLX1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLX1_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.140e-27 Identity = 55/109 (50.46%), Postives = 71/109 (65.14%), Query Frame = 1
Query: 1 KKQGVYELVPSPSVPAGQKVVGLRWFNKIKADGLFKSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYETHD 327
K V +LVP S+P G K +G RW K+KA G+ K+RL+V GW Q GIDC GT+AP S ++AIAAE Y V ++V T+FL ++VEEEVYV+ A GYE D
Sbjct: 18 KDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITD 126
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A6H5KUT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT9_9PHAE) HSP 1 Score: 115 bits (287), Expect = 6.830e-27 Identity = 61/117 (52.14%), Postives = 81/117 (69.23%), Query Frame = 1
Query: 106 KSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYETHDTSGVLFVMKLKESLYSLRLSLKHWFGTMDDHLSNIGFRLLKTD 456
KS + GW QVPG DC GT AP L+S R VLAIAAE+++EV L+V+TSFL AD+EE+V+VKMA G+E + +G VMKL SLY L S ++W+ T+D L +GF LK++
Sbjct: 325 KSLQELKGWNQVPGKDCDGTVAPVGRLQSVRMVLAIAAEMDWEVRQLDVKTSFLYADLEEDVFVKMAPGFEARNANGHKLVMKLGVSLYGLAQSPQNWWKTIDPKLIELGFEPLKSE 441
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A396GLT1_MEDTR (Putative RNA-directed DNA polymerase n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396GLT1_MEDTR) HSP 1 Score: 100 bits (249), Expect = 2.240e-22 Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 1
Query: 1 KKQGVYELVPSPSVPAGQKVVGLRWFNKIK--ADGL---FKSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYETHDTSGVLFVMKLKESLYSLRLSLKHWFGTMDDHLSNIGF 438
+K ++LV +P G+ +GL+W K K DG +K+RLVV G+ Q PG+D TFAP + + R VLA+AA+L +V L+V+++FL ++EEEVYVK G+E G ++ KL ++LY L+ + + W +D + GF
Sbjct: 9 EKNRTWQLV---DLPKGKDAIGLKWVYKTKYNEDGSVQKYKARLVVKGYSQQPGVDFNETFAPVVRMETIRTVLALAAQLELQVFQLDVKSTFLNGELEEEVYVKQPQGFEVEGKEGKVY--KLHKALYGLKQAPRAWNSKIDAYFLQNGF 154
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A151U447_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151U447_CAJCA) HSP 1 Score: 97.4 bits (241), Expect = 4.270e-22 Identity = 54/145 (37.24%), Postives = 87/145 (60.00%), Query Frame = 1
Query: 37 SVPAGQKVVGLRWFNKIK--ADGL---FKSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYETHDTSGVLFVMKLKESLYSLRLSLKHWFGTMDDHLSNIGFRLLKTD 456
S+P G+K +G +W K+K +DG +K+RLV G+ Q GID + TF+P + + R +L+IAA N+E+ L+V T+FL D+ EEVY++ G + D++ V K+++SLY L+ + + W + D L GF+ K D
Sbjct: 44 SLPEGKKTIGCKWVFKVKHNSDGSIERYKARLVAKGFTQTVGIDYLETFSPVVKMTTIRVLLSIAANCNWELHQLDVNTTFLHGDLREEVYMEPPPGLQLSDST---LVCKIEKSLYGLKQASRQWNIKLTDTLIASGFKQSKVD 185
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A5N6P044_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P044_9ASTR) HSP 1 Score: 100 bits (248), Expect = 1.090e-21 Identity = 61/152 (40.13%), Postives = 88/152 (57.89%), Query Frame = 1
Query: 16 YELVPSPSVPAGQKVVGLRWF--NKIKADGL---FKSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYETHDTSGVLFVMKLKESLYSLRLSLKHWFGTMDDHLSNIGFRLLKTD 456
+ELV +P G K +G RW K+KADG +K+RLV+ G+ Q G+D T++P + S R VLAIAA N EV ++V+TSFL D+EEE+Y++ G+ G V KL +SLY L+ + K W D + N GF++ + D
Sbjct: 103 WELV---DLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTSFLNGDLEEEIYMEQPEGFSAPGQEGK--VCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFKINECD 249
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A438FKH2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FKH2_VITVI) HSP 1 Score: 98.2 bits (243), Expect = 6.250e-21 Identity = 55/151 (36.42%), Postives = 86/151 (56.95%), Query Frame = 1
Query: 1 KKQGVYELVPSPSVPAGQKVVGLRWFNKIKADGL-----FKSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYETHDTSGVLFVMKLKESLYSLRLSLKHWFGTMDDHLSNIGF 438
K V++LV +P G K +G +W K K D L +K+RLV G+ Q GID TF+P S R +LA+ A + E+ ++V+T+FL ++EEEVY+K G+ + D G V KLK+S+Y L+ + + W+ + +S+ GF
Sbjct: 451 KCNDVWDLV---ELPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTTFLNGELEEEVYMKQPEGFPSSD--GEQLVCKLKKSIYGLKQASRQWYLKFHNIISSFGF 596
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A438GMM1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GMM1_VITVI) HSP 1 Score: 98.2 bits (243), Expect = 6.310e-21 Identity = 55/151 (36.42%), Postives = 86/151 (56.95%), Query Frame = 1
Query: 1 KKQGVYELVPSPSVPAGQKVVGLRWFNKIKADGL-----FKSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYETHDTSGVLFVMKLKESLYSLRLSLKHWFGTMDDHLSNIGF 438
K V++LV +P G K +G +W K K D L +K+RLV G+ Q GID TF+P S R +LA+ A + E+ ++V+T+FL ++EEEVY+K G+ + D G V KLK+S+Y L+ + + W+ + +S+ GF
Sbjct: 374 KCNDVWDLV---ELPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTTFLNGELEEEVYMKQPEGFPSSD--GEQLVCKLKKSIYGLKQASRQWYLKFHNIISSFGF 519 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig846.19836.1 >prot_F-serratus_M_contig846.19836.1 ID=prot_F-serratus_M_contig846.19836.1|Name=mRNA_F-serratus_M_contig846.19836.1|organism=Fucus serratus male|type=polypeptide|length=152bp KKQGVYELVPSPSVPAGQKVVGLRWFNKIKADGLFKSRLVVLGWVQVPGIback to top mRNA from alignment at F-serratus_M_contig846:127473..127928+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig846.19836.1 ID=mRNA_F-serratus_M_contig846.19836.1|Name=mRNA_F-serratus_M_contig846.19836.1|organism=Fucus serratus male|type=mRNA|length=456bp|location=Sequence derived from alignment at F-serratus_M_contig846:127473..127928+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig846:127473..127928+ >mRNA_F-serratus_M_contig846.19836.1 ID=mRNA_F-serratus_M_contig846.19836.1|Name=mRNA_F-serratus_M_contig846.19836.1|organism=Fucus serratus male|type=CDS|length=912bp|location=Sequence derived from alignment at F-serratus_M_contig846:127473..127928+ (Fucus serratus male)back to top |