mRNA_F-serratus_M_contig846.19835.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig846.19835.1
Unique NamemRNA_F-serratus_M_contig846.19835.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig846.19835.1 vs. uniprot
Match: A0A6H5KTK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK9_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.200e-7
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 IGAVAARAVSRREDGAGEVAKGAGAVADAALEKAASLERELNITGKAGQA 150
            IGA+AARA S REDG G VAKGAGAVADAA+EKA +LERE  ++ KA  A
Sbjct:  297 IGAIAARAASGREDGVGNVAKGAGAVADAAMEKAQALEREFELSRKAKTA 346
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BLAST of mRNA_F-serratus_M_contig846.19835.1 vs. uniprot
Match: D7G4B6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B6_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.940e-7
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 IGAVAARAVSRREDGAGEVAKGAGAVADAALEKAASLERELNITGKAGQA 150
            IGA+AARA S REDG G VAKGAGAVADAA+EKA +LERE  ++ KA  A
Sbjct:  199 IGAMAARAASGREDGVGNVAKGAGAVADAAMEKAQALEREFELSRKAKTA 248
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig846.19835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTK9_9PHAE1.200e-770.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4B6_ECTSI1.940e-770.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig846contigF-serratus_M_contig846:118309..124156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size582
Cds size468
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig846.19835.1prot_F-serratus_M_contig846.19835.1Fucus serratus malepolypeptideF-serratus_M_contig846 118309..124044 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932491.1099334-CDS-F-serratus_M_contig846:118308..1184121622932491.1099334-CDS-F-serratus_M_contig846:118308..118412Fucus serratus maleCDSF-serratus_M_contig846 118309..118412 +
1690964334.5999494-CDS-F-serratus_M_contig846:118308..1184121690964334.5999494-CDS-F-serratus_M_contig846:118308..118412Fucus serratus maleCDSF-serratus_M_contig846 118309..118412 +
1622932491.1323578-CDS-F-serratus_M_contig846:120371..1205791622932491.1323578-CDS-F-serratus_M_contig846:120371..120579Fucus serratus maleCDSF-serratus_M_contig846 120372..120579 +
1690964334.6118567-CDS-F-serratus_M_contig846:120371..1205791690964334.6118567-CDS-F-serratus_M_contig846:120371..120579Fucus serratus maleCDSF-serratus_M_contig846 120372..120579 +
1622932491.156864-CDS-F-serratus_M_contig846:121350..1214541622932491.156864-CDS-F-serratus_M_contig846:121350..121454Fucus serratus maleCDSF-serratus_M_contig846 121351..121454 +
1690964334.621069-CDS-F-serratus_M_contig846:121350..1214541690964334.621069-CDS-F-serratus_M_contig846:121350..121454Fucus serratus maleCDSF-serratus_M_contig846 121351..121454 +
1622932491.1906295-CDS-F-serratus_M_contig846:123992..1240441622932491.1906295-CDS-F-serratus_M_contig846:123992..124044Fucus serratus maleCDSF-serratus_M_contig846 123993..124044 +
1690964334.6302178-CDS-F-serratus_M_contig846:123992..1240441690964334.6302178-CDS-F-serratus_M_contig846:123992..124044Fucus serratus maleCDSF-serratus_M_contig846 123993..124044 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932491.2178187-UTR-F-serratus_M_contig846:124044..1241561622932491.2178187-UTR-F-serratus_M_contig846:124044..124156Fucus serratus maleUTRF-serratus_M_contig846 124045..124156 +
1690964334.63981-UTR-F-serratus_M_contig846:124044..1241561690964334.63981-UTR-F-serratus_M_contig846:124044..124156Fucus serratus maleUTRF-serratus_M_contig846 124045..124156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig846.19835.1

>prot_F-serratus_M_contig846.19835.1 ID=prot_F-serratus_M_contig846.19835.1|Name=mRNA_F-serratus_M_contig846.19835.1|organism=Fucus serratus male|type=polypeptide|length=156bp
IGAVAARAVSRREDGAGEVAKGAGAVADAALEKAASLERELNITGKAGQA
VRGATEAVKKVDSDLKVRERAQGAANRALTAAQKAEKELRVRERAAGAAK
TAEKAAKRAAEAARNIEKEHRLQERAGNTFRGLRSRVQRTVENLDRRKKS
KEDRP*
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mRNA from alignment at F-serratus_M_contig846:118309..124156+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig846.19835.1 ID=mRNA_F-serratus_M_contig846.19835.1|Name=mRNA_F-serratus_M_contig846.19835.1|organism=Fucus serratus male|type=mRNA|length=5848bp|location=Sequence derived from alignment at F-serratus_M_contig846:118309..124156+ (Fucus serratus male)
ATCGGCGCGGTGGCCGCAAGGGCGGTGAGCAGGAGAGAGGATGGGGCGGG
GGAGGTGGCGAAGGGGGCGGGCGCCGTGGCTGATGCAGCGCTGGAAAAGG
CCGCGTGAGTTTTGATTCGGTTATCATGATCATTTTCATTATGACGTTTT
TCGTTCTCACTTTGGTTGGTCATCACCCTTCGTGTGTGTGTGTGAGAGAG
AGAGAGTGTGTGTATGTGTACTTACTGAATTGAGCGTGACCTCGCAAATC
CGACCCTGTCATCCTATTATAGTCGTTCTATGCTACTCGCACCGGTCCTC
CCAAGGTGCTACTCGCACCGGTCCTCCCAAGGGGTATTAAGGGATCAATG
ATACTTGTCACGATGTGTGTATATGTGTGTGTCAATAGTGGGTTTTGCTT
TCTCTCTTTCTATGAATATATATATATATACTTCAGTACTTATTTATTTT
TTAAATCTCACTTATACCTGATGGACCTCATTATTGCCACCCTGCCTGTG
GTCACTAAGGATCTTCCCATCTCTCCCCGGTTCACGCCTTACGGCTTTTT
ATCGCGATGCAAGTCCAGCAGTTTTACAACCTTTCAACTAATGGTTGAAC
TTCATTTACTCATGTTCCCACGCCATCCGTTACGGAAGAAAGAACACAAA
TCCTACTTTGGTAAGAATCGAACTCACGACTTGCGCACTCTAGCAGGTTT
GCAGGTTATCTACTAGATCACTCGGGCGACGAGCACATACAAATATATAT
ATATAACATTTTTTCATGCGGTTTTTCCTGGGCTCTTTTCTCTGAATTAT
TTTGGCATCAGCCTGTTTTTTTGTATCTTTCAAATCTCTAGAGCCACAGG
TTTCTTTATAGTTTTTTTCTTCTTTTTAGCCATCCGCGAGAAATATTCGC
GTGCCGTGAAGAAAGCCTCGACTCTACGAAACCCGGTTCTTTGGGTCAAA
ACGCAAGGGTTTGATTGGTCGAATGGCCACCAATTCTGAAGAAGTCTCAT
TTTTTTTCGCGTCTCACGTCAtTTTTTTTTTTTTACGTGTGTGCGGCTTA
CTGATATTTGCCAAAACTTAACTTTTACCACCCCGAGCCTAACCTCAATG
GCGCGGTTCTTTTTGGCAAATCCGCCCAAATGCTCGAGGTAAACTCGAAT
GACCCTCGCTTATACCTTTAAGCCGTGGATTGTGGAAAGTAACCCAGTGG
TTCAAGGATAGGTATTTCATTCCATGCAGCCGCTCGAACGCAAGTCGTAT
TAACTTGTTTGGGACAACAGACCGCGCGTCCTCTAGGGGGGGGGGATCAA
AGGCACTCCACTCTCTTTTGTTGAGGAGTACCCTCCTTGTTGAAGGGTTT
GAAAAGCAGTACCCTCTAGGATGACGAGCACCGTCTCCTGCTGTTCCATT
TTTTTTATGAGTACGGTCATCGATTCGAGTACTGTACCCTGGTCCATGGT
GAGATCTGCCGAGGCAGCACCCGTTTGGAACTACCTTGAGGCCTACTGGC
CCTGTGCCGGCGGACTCTCGGCAGTGACCGCCATCGGTACTCGATTGCGT
GACCCGATAAACTCGGGACCGACCCGATGACGTATGGCGGTATGAATGAA
TAAATGGACGCCGCCGCGGAAATCGGGAGGAATCCCGCGAGTAAGCACCA
GATTTAGCCTGAGTATCGAGATGAGCAGGCTGACGCGGGACGGGATTGCC
CAACCCGTTTCGCGAGACTAAATTCTCAGCCGCGAACGGCGACGGAGAAA
CATTCATTTTCCCTGTTCAGTTGACCACGAGCAGGATTGGCAGCAACCTT
ACCCGGTTGATCCATACTTTTGCTATATGTGATGACCATACATGTGTACC
CTTGGTAGAGCGGAGTGCCCGCTTTTGGGGGGGAGTATGTAACAGGTATA
ACCCCTTTGTCGAGGGTTGCCCTCTATGCCGAAGAGTCGGTTTTCTTTTT
CTCCCTTTAACGGTCACTCCAACGGTGACCGGTGAAACCAAGCCGTCAAC
ACCGCTCCCGCCAGACAGCAACGCCTCACCAAGTTATCACCAATCGCTAC
CTGTAACCCCCAGGAGCCTAGAGAGGGAGTTGAACATTACCGGGAAGGCG
GGGCAGGCGGTGCGCGGCGCGACGGAGGCAGTGAAAAAGGTGGACTCTGA
CCTGAAGGTGCGCGAGCGCGCCCAGGGCGCTGCCAACAGGGCCTTGACCG
CGGCTCAGAAGGCGGAAAAGGAGCTCCGTGTAAGGGAGAGGGCGGCCGGG
GCCGCGAAGACAGCGGAAAAGGTTAGTGTAAGCGCGTATGTGTACGTGTT
ATTGTAAGTGTAAGTTTACTGTGTGTAATCTGTTGAAAAGGTTAATGTAA
GTGTATGTGTACGTTTTATTGTAAGTGTAGGTTTAAGTTTACATGTCTAT
TCTGTTGAAAGGGTTATTTAGTGTGAGCGTATGTGTACGTGGTATTTAAG
TTTAAGTGTAAGTTTACCATGTCTATTCCATTAGGTTTTCAATTGCACAT
GACCACGCATTCCGGCCCTGTCGGACTGATCGTTCATTGCTATGTTTGCT
TTTTGTGTGCTGTTTGTATGTAGGCGTGTTTCGCCGTGTCGGGGATCCGT
GCACGTGTACGACTTCATTTTTGTGTTTTTTTGTAGTACAGCCGCGGCAC
CCAAAGGAGGCGTGTTGTCAGACAAGTACACGTTTTGTCGGGTGTTGTAT
CCTGTTGTATTATCAGTAGTAGCTGCAGCAACGGGAGAGGAACGTGGTTG
TGTGCGAAGAAATGTAATAATCATTTTTATAGAGAGATTGGCTGGTCACC
GCGGGGATGTAGTAGACTCGTCCCCCCGTGTTGTTTTTACGGGCCCTCCC
CACCTTCCACCTCTTTTTTTTCCCCCATTTTTCATTGAATATTCAATATT
CGCGCGCAGGTCAACGCTGCGCTCTCCTGTTGACATCGCGATGCCCTTCC
CACACGTACTGCTGCTGCTCTGTGCTCTGTGCTGACCATAATTATCGCAA
TTCACTGTAACTTGATTGACAAAACCAATCGTTGGGGGGCAGGCAGCTAA
GCGGGCGGCTGAAGCAGCGAGAAACATCGAAAAGGAACATCGGTTACAAG
AACGAGCGGGCAATACATTCCGAGGGTTACGCTCCAGGGTTCAAAGGTCG
GAGTTCAACACTAGAGGGCGTTTGGGAGAGGGGAAGGGACTGTTTGTTCC
GCGGCTTGTGTAGGTATAGGTTCGCCAGACAGTACCTATTCAGTGGGGAA
AACCATGTGGTTTTACACCACTTGGTTGTTTTATAGAAAAATACGAATGC
ATCTAACCTTTTGAGCAAGGGAGAAAAATGTCAAAACGTTTAGGTGGGAT
CATAGGCTCCACAACCAATTGTGCCCCCATCACTCTTTGCTGTGGAAACC
CTTAAACCCTTTTGGAGCCCACCTACCAATAGGTAATATCCATGGTGACC
TGCTAAGGCAGTACTCGTTCGGAACTACCTCGAGGTTTACTGGCCCCGTG
CCGACGGACTGTCGGCAGTGAACACCATCGGTACGCAATTGCGTGACCCG
ATAAACTCGGGACTTACCCGATGGCGTATGGCGGTCTTATATAAATATAT
GGACGCCGCCGCGGAACTCGGAGGAATCCCGTAAGTAAGCACCAGATTCA
CCCTGAGTATGGAGATGAGCAGGCTGACGCGGGACGGGACTGCCGAACCC
GTCTCGCGAGACCAAATTCTTAGGCACGAACGCGGACCGGGGAATATTCT
TTTCCCCGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACCCGGTTGA
TCCATACTCTGCTATATGTGATGACCGTACATACCAGATGAAACAGTATG
TATGGACATCACTTATAGCAGAGTATGGATCAACCGTGTGAGGTTGTCGA
TCCTGCTCGTGCTCAGCTGCGCAACAGGGAAAATTAATGTTTCCCTGTCC
CCATTCGTGCCTGAGAATTGGGTCTCGCGAGACAGGTTTGGCGTCCCGTC
CCGCGTCAGCCTGCCCATTCTCCATATTCAGGCTGAATCTGGTGCTTACT
CACGGGATCCCTTCCGATTTCCGCGGCGGCGTCCATTTATTTATTTAAAC
CGCCATACGACATCGGGTCAGTCCCGAGTTTATCGGGTCACGCAATTGCG
TACCGATGGCGTTCACTGCCGAGAGTCCACCGGCACAGGGCCAGTAAGTA
GTCCTCAAGGCAGTTCCAGAAACGGGTGCTGCCTTGGCAGGTCACCATGG
ACCTTTTAATGTGCGCCACTCTTTTCCCACACACAGTATTGGTGTGTAGT
GGAGATGTGGGATACAGAAAATATCGAGAACCTAGTATTAAAAGACTGCA
GCAGTAACCCCCCCCCCTCCTTAAAAAACATGCAACAAAAACCAAGGGGA
ACTCCTGTTATGGCCTATGTAGCAAGAGAGAGAGTAGCATATCTAACAAT
TCATAGCAATAGCGGGTGTGGGAAATGAGAGGCGCACATTAAGTGGTCCA
TGTTGATGCAAAGGCAGCACCCGTTACTGGAACTCCCTTGAGGACTATGA
CTATTGGCCCTTTACTGTGCCGGCGGACTCTCTGCAGTAAACGCCATCGG
TACGCGATTGCGTGACCCGATAAACTCGGGACTGGCCCGATGGTGGCTGG
CGGGTGGCGGTCTTAATGAATGAATGGGCGCCGCCGTGGAAAGCGGGAGG
AATCCCGTGAGTAAGCACAATATTCAGACTGAGTGTGGAGAATTAGTAGG
CTGGCGCGGGACGGGATGCCGAACCTGTTGTTCCAGAACCAAAACGATGT
TGGTGGTGGGGCACCCAGGGCAGGGGGGGGGGGGGGGTCCTAAAGTTGTC
CCCGAGTTCAGGATAGGAAGGCCCGAAAACATTCCCTCTTGGATCGATCT
TGCCTACAAGTATCACGGAGGGGATAGTGCAGTCCCATCCCCGGAAGGGG
ATGTTTTGAGGGCATCACAGGGGACGGGATCATCAAATCCCCCCCCTCCA
CATGTTGAACGATTCACTGGTATCTAAAATGTTGCATCTTGTCTACTGGA
GGCTCGAACAAAAAAAAACAGTACAAAAATAAATAAATCTACCTCTACCT
CAGAAGTAAAATATAACCAACCGGCCTTGCGCGCTTAGATGATGGCCTTT
TATTTGGAAGTACGTGGCATTAATAGTTGATTGATTGTGTTGTTGGGAGT
CGCCAGGTGTAAGGCAGCACAGGGTCTGGTCTGGTAAGTCTGACGAGAAC
ACGAGTTCATGTGTCACTTCGGATAACGCCTTCAAAAACTTATTTGCTTG
TGATAGGAAAATCAACCACAGCACCTGTTTGTATGATGTAGGAAGGAAGG
AGTGGTTCAGTTTAAAGAATAATCTGAACGCATCTAGCTAGACCTTCTGA
GATGTTACATCATTATACATCATCCCCCAGTCAGCGGGGGAAGTGTCAAA
ACGTTTAGGTGGGATCATAGGCTGCAAACACAAAACCTCTTCATGGCATT
TAAATTCCCCGCGGTATCTTCACTGGGTTATGACAAATCAAGTAATAGTA
AAAAGGTTGTTGGAAAACATTTCCATAACTCTCAAAACGTGTGTATCTGA
CACATGGACGCGTTCTGGTATTTCTTTATAAACACCCGCATCGGTTCGAA
TGCTCTGCCCTCCGTGAAAAACCCCGCCTGACAGGACTGTGGAAAACCTG
GATCGGCGTAAAAAGTCGAAAGAAGATCGCCCCTGACTCCAGGCTTCAGC
CAGACCACGTACATTTATATATGGTTCAAATATTATACACGTAGTATAAC
ATAGCTCTATGAGTGAAGAGTGGACTACTCAAAGGCGCCGAAAACAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig846:118309..124156+

>mRNA_F-serratus_M_contig846.19835.1 ID=mRNA_F-serratus_M_contig846.19835.1|Name=mRNA_F-serratus_M_contig846.19835.1|organism=Fucus serratus male|type=CDS|length=936bp|location=Sequence derived from alignment at F-serratus_M_contig846:118309..124156+ (Fucus serratus male)
ATCGGCGCGGTGGCCGCAAGGGCGGTGAGCAGGAGAGAGGATGGGGCGGG
GGAGGTGGCGAAGGGGGCGGGCGCCGTGGCTGATGCAGCGCTGGAAAAGG
CCGCATCGGCGCGGTGGCCGCAAGGGCGGTGAGCAGGAGAGAGGATGGGG
CGGGGGAGGTGGCGAAGGGGGCGGGCGCCGTGGCTGATGCAGCGCTGGAA
AAGGCCGCGAGCCTAGAGAGGGAGTTGAACATTACCGGGAAGGCGGGGCA
GGCGGTGCGCGGCGCGACGGAGGCAGTGAAAAAGGTGGACTCTGACCTGA
AGGTGCGCGAGCGCGCCCAGGGCGCTGCCAACAGGGCCTTGACCGCGGCT
CAGAAGGCGGAAAAGGAGCTCCGTGTAAGGGAGAGGGCGGCCGGGGCCGC
GAAGACAGCGGAAAAGGAGCCTAGAGAGGGAGTTGAACATTACCGGGAAG
GCGGGGCAGGCGGTGCGCGGCGCGACGGAGGCAGTGAAAAAGGTGGACTC
TGACCTGAAGGTGCGCGAGCGCGCCCAGGGCGCTGCCAACAGGGCCTTGA
CCGCGGCTCAGAAGGCGGAAAAGGAGCTCCGTGTAAGGGAGAGGGCGGCC
GGGGCCGCGAAGACAGCGGAAAAGGCAGCTAAGCGGGCGGCTGAAGCAGC
GAGAAACATCGAAAAGGAACATCGGTTACAAGAACGAGCGGGCAATACAT
TCCGAGGGTTACGCTCCAGGGTTCAAAGGCAGCTAAGCGGGCGGCTGAAG
CAGCGAGAAACATCGAAAAGGAACATCGGTTACAAGAACGAGCGGGCAAT
ACATTCCGAGGGTTACGCTCCAGGGTTCAAAGGACTGTGGAAAACCTGGA
TCGGCGTAAAAAGTCGAAAGAAGATCGCCCCTGAGACTGTGGAAAACCTG
GATCGGCGTAAAAAGTCGAAAGAAGATCGCCCCTGA
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