mRNA_F-serratus_M_contig846.19834.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig846.19834.1
Unique NamemRNA_F-serratus_M_contig846.19834.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig846.19834.1 vs. uniprot
Match: A0A6H5KTK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK9_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 7.890e-28
Identity = 92/229 (40.17%), Postives = 118/229 (51.53%), Query Frame = 2 
Query:   62 RRLVATTTLVLPLIFSRTNGFVHNTPMAPTGSRTETLKYYGLSSPAQHQHQQLGGLSIRFLHCRRRQP-RNPISEKGNICYRYLRRHPSTSSSRV----SPLRMMSISAEDLHVSVVSGVPSTT----------------LVIQASHIDPHTKIPRTWTASRSEQDFYDLGVSLMGALGG--AGGKLPGPPRMGSSPAVLEGYLRRLMGEPVVTTLPALYAFLDAPQDL 679
            R +VA+T  ++P +    +  +H T +      T   K  G + P      Q   L  ++   RR    R  IS + +         P + SSR+    S    MS++AE L V VVS    T                 L IQAS+++P T   RTWTASRSE+DF+ LGV+LMG L G  A  K+PGPP  GSSP V E YLRRL+  PVVT+LPALY FLDAP DL
Sbjct:    5 RSVVASTAALIPFLLLAADALLHPTRL------TTPAKPAGSNKPGAAPVPQCSTLPQQYFCFRRTSKYRGDISSRCSSSXXXXXXXPRSRSSRLEDALSYTTRMSLAAEGLDVWVVSDDGRTXXXXXXXXXXXXXXAKLLSIQASYVEPGTGTRRTWTASRSEKDFFALGVTLMGKLAGSAADAKVPGPPPEGSSPVVFEVYLRRLIDVPVVTSLPALYEFLDAPPDL 227
[Close]
BLAST of mRNA_F-serratus_M_contig846.19834.1 vs. uniprot
Match: D7G4B6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B6_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 8.370e-25
Identity = 59/89 (66.29%), Postives = 68/89 (76.40%), Query Frame = 2 
Query:  419 LVIQASHIDPHTKIPRTWTASRSEQDFYDLGVSLMGALGG--AGGKLPGPPRMGSSPAVLEGYLRRLMGEPVVTTLPALYAFLDAPQDL 679
            L IQAS+++  T   RTWTASRSE+DF+ LGV+LMG L G  A  K+PGPP  GSSPAV E YLRRL+  PVVT+LPALY FLDAP DL
Sbjct:   41 LSIQASYVELGTGTRRTWTASRSEKDFFALGVTLMGKLAGSAADAKVPGPPPEGSSPAVFEVYLRRLIDVPVVTSLPALYEFLDAPPDL 129
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig846.19834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTK9_9PHAE7.890e-2840.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4B6_ECTSI8.370e-2566.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig846contigF-serratus_M_contig846:114980..115658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_002080.1
Exons1
Model size681
Cds size672
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932492.1046546-UTR-F-serratus_M_contig846:114979..1149861622932492.1046546-UTR-F-serratus_M_contig846:114979..114986Fucus serratus maleUTRF-serratus_M_contig846 114980..114986 +
1690964335.025505-UTR-F-serratus_M_contig846:114979..1149861690964335.025505-UTR-F-serratus_M_contig846:114979..114986Fucus serratus maleUTRF-serratus_M_contig846 114980..114986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932492.119903-CDS-F-serratus_M_contig846:114986..1156581622932492.119903-CDS-F-serratus_M_contig846:114986..115658Fucus serratus maleCDSF-serratus_M_contig846 114987..115658 +
1690964335.0393205-CDS-F-serratus_M_contig846:114986..1156581690964335.0393205-CDS-F-serratus_M_contig846:114986..115658Fucus serratus maleCDSF-serratus_M_contig846 114987..115658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig846.19834.1prot_F-serratus_M_contig846.19834.1Fucus serratus malepolypeptideF-serratus_M_contig846 114987..115658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig846.19834.1

>prot_F-serratus_M_contig846.19834.1 ID=prot_F-serratus_M_contig846.19834.1|Name=mRNA_F-serratus_M_contig846.19834.1|organism=Fucus serratus male|type=polypeptide|length=224bp
MPETLPVKRERFECANMVRRLVATTTLVLPLIFSRTNGFVHNTPMAPTGS
RTETLKYYGLSSPAQHQHQQLGGLSIRFLHCRRRQPRNPISEKGNICYRY
LRRHPSTSSSRVSPLRMMSISAEDLHVSVVSGVPSTTLVIQASHIDPHTK
IPRTWTASRSEQDFYDLGVSLMGALGGAGGKLPGPPRMGSSPAVLEGYLR
RLMGEPVVTTLPALYAFLDAPQDL
back to top

mRNA from alignment at F-serratus_M_contig846:114980..115658+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig846.19834.1 ID=mRNA_F-serratus_M_contig846.19834.1|Name=mRNA_F-serratus_M_contig846.19834.1|organism=Fucus serratus male|type=mRNA|length=679bp|location=Sequence derived from alignment at F-serratus_M_contig846:114980..115658+ (Fucus serratus male)
GGTTGGAATGCCGGAGACGTTGCCTGTTAAACGTGAAAGATTTGAGTGCG
CGAACATGGTAAGGAGACTGGTAGCGACAACGACTCTCGTACTTCCGCTC
ATCTTCTCGAGAACGAATGGCTTCGTTCACAACACTCCCATGGCGCCAAC
GGGGAGCAGGACGGAGACGCTCAAGTATTACGGGTTGTCATCTCCGGCGC
AGCACCAGCACCAGCAGCTCGGCGGCTTGTCCATCAGGTTCCTCCACTGC
CGCAGAAGGCAACCGAGGAATCCAATCTCGGAGAAGGGAAATATCTGTTA
TCGATACCTTCGTCGCCACCCTTCTACTTCGTCATCGCGCGTCTCCCCTC
TACGTATGATGTCCATCTCCGCCGAAGACCTCCACGTCTCAGTGGTCAGC
GGAGTACCTTCGACCACCCTGGTGATCCAAGCCTCTCACATCGACCCGCA
CACCAAGATTCCAAGGACCTGGACAGCCAGCCGCTCGGAGCAAGACTTTT
ATGACCTAGGCGTGAGCTTAATGGGTGCTCTCGGAGGTGCGGGGGGGAAG
CTACCCGGGCCGCCGAGGATGGGCTCGTCTCCGGCTGTGTTGGAAGGATA
CCTTAGGAGGTTGATGGGCGAGCCTGTCGTGACCACCCTGCCCGCTCTGT
ACGCGTTTCTCGACGCCCCGCAAGACCTG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig846:114980..115658+

>mRNA_F-serratus_M_contig846.19834.1 ID=mRNA_F-serratus_M_contig846.19834.1|Name=mRNA_F-serratus_M_contig846.19834.1|organism=Fucus serratus male|type=CDS|length=1344bp|location=Sequence derived from alignment at F-serratus_M_contig846:114980..115658+ (Fucus serratus male)
ATGCCGGAGACGTTGCCTGTTAAACGTGAAAGATTTGAGTGCGCGAACAT
GGTAAGGAGACTGGTAGCGACAACGACTCTCGTACTTCCGCTCATCTTCT
CGAGAACGAATGGCTTCGTTCACAACACTCCCATGGCGCCAACGGGGAGC
AGGACGGAGACGCTCAAGTATTACGGGTTGTCATCTCCGGCGCAGCACCA
GCACCAGCAGCTCGGCGGCTTGTCCATCAGGTTCCTCCACTGCCGCAGAA
GGCAACCGAGGAATCCAATCTCGGAGAAGGGAAATATCTGTTATCGATAC
CTTCGTCGCCACCCTTCTACTTCGTCATCGCGCGTCTCCCCTCTACGTAT
GATGTCCATCTCCGCCGAAGACCTCCACGTCTCAGTGGTCAGCGGAGTAC
CTTCGACCACCCTGGTGATCCAAGCCTCTCACATCGACCCGCACACCAAG
ATTCCAAGGACCTGGACAGCCAGCCGCTCGGAGCAAGACTTTTATGACCT
AGGCGTGAGCTTAATGGGTGCTCTCGGAGGTGCGGGGGGGAAGCTACCCG
GGCCGCCGAGGATGGGCTCGTCTCCGGCTGTGTTGGAAGGATACCTTAGG
AGGTTGATGGGCGAGCCTGTCGTGACCACCCTGCCCGCTCTGTACGCGTT
TCTCGACGCCCCGCAAGACCTGATGCCGGAGACGTTGCCTGTTAAACGTG
AAAGATTTGAGTGCGCGAACATGGTAAGGAGACTGGTAGCGACAACGACT
CTCGTACTTCCGCTCATCTTCTCGAGAACGAATGGCTTCGTTCACAACAC
TCCCATGGCGCCAACGGGGAGCAGGACGGAGACGCTCAAGTATTACGGGT
TGTCATCTCCGGCGCAGCACCAGCACCAGCAGCTCGGCGGCTTGTCCATC
AGGTTCCTCCACTGCCGCAGAAGGCAACCGAGGAATCCAATCTCGGAGAA
GGGAAATATCTGTTATCGATACCTTCGTCGCCACCCTTCTACTTCGTCAT
CGCGCGTCTCCCCTCTACGTATGATGTCCATCTCCGCCGAAGACCTCCAC
GTCTCAGTGGTCAGCGGAGTACCTTCGACCACCCTGGTGATCCAAGCCTC
TCACATCGACCCGCACACCAAGATTCCAAGGACCTGGACAGCCAGCCGCT
CGGAGCAAGACTTTTATGACCTAGGCGTGAGCTTAATGGGTGCTCTCGGA
GGTGCGGGGGGGAAGCTACCCGGGCCGCCGAGGATGGGCTCGTCTCCGGC
TGTGTTGGAAGGATACCTTAGGAGGTTGATGGGCGAGCCTGTCGTGACCA
CCCTGCCCGCTCTGTACGCGTTTCTCGACGCCCCGCAAGACCTG
back to top