mRNA_F-serratus_M_contig843.19812.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig843.19812.1
Unique NamemRNA_F-serratus_M_contig843.19812.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig843.19812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig843contigF-serratus_M_contig843:222636..223427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size792
Cds size462
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932485.7139962-CDS-F-serratus_M_contig843:222635..2230971622932485.7139962-CDS-F-serratus_M_contig843:222635..223097Fucus serratus maleCDSF-serratus_M_contig843 222636..223097 +
1690964332.023986-CDS-F-serratus_M_contig843:222635..2230971690964332.023986-CDS-F-serratus_M_contig843:222635..223097Fucus serratus maleCDSF-serratus_M_contig843 222636..223097 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932485.7348816-UTR-F-serratus_M_contig843:223097..2234271622932485.7348816-UTR-F-serratus_M_contig843:223097..223427Fucus serratus maleUTRF-serratus_M_contig843 223098..223427 +
1690964332.0361438-UTR-F-serratus_M_contig843:223097..2234271690964332.0361438-UTR-F-serratus_M_contig843:223097..223427Fucus serratus maleUTRF-serratus_M_contig843 223098..223427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig843.19812.1prot_F-serratus_M_contig843.19812.1Fucus serratus malepolypeptideF-serratus_M_contig843 222636..223097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig843.19812.1

>prot_F-serratus_M_contig843.19812.1 ID=prot_F-serratus_M_contig843.19812.1|Name=mRNA_F-serratus_M_contig843.19812.1|organism=Fucus serratus male|type=polypeptide|length=154bp
IGASLVDEPEAKGCVVGDGGSINGVGAGGGSNGELEHPPQSVMPAQSAER
QQPQPQKHKDGAPERVGLEGDESVEQQPRQELDVGSEYLDQKGGGNGQFY
DGITGGPTCPLGGRPEEQGSGHHEGATGTATGGSTEEETTHEVLAQVAHI
NRQ*
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mRNA from alignment at F-serratus_M_contig843:222636..223427+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig843.19812.1 ID=mRNA_F-serratus_M_contig843.19812.1|Name=mRNA_F-serratus_M_contig843.19812.1|organism=Fucus serratus male|type=mRNA|length=792bp|location=Sequence derived from alignment at F-serratus_M_contig843:222636..223427+ (Fucus serratus male)
ATTGGGGCCTCTTTGGTAGATGAACCGGAAGCCAAGGGCTGCGTTGTTGG
TGACGGTGGCAGCATTAACGGTGTCGGCGCAGGAGGAGGAAGTAACGGCG
AGTTGGAACACCCTCCTCAATCTGTGATGCCTGCACAGAGCGCTGAACGG
CAGCAACCGCAGCCGCAAAAACATAAGGATGGCGCACCTGAACGTGTAGG
GTTAGAAGGAGACGAGTCGGTGGAGCAACAACCTCGCCAAGAGCTAGACG
TGGGCAGCGAGTATCTCGACCAGAAAGGTGGTGGTAATGGTCAATTTTAT
GACGGTATCACGGGCGGGCCGACTTGTCCCCTCGGAGGCCGTCCCGAGGA
GCAGGGGAGTGGGCATCACGAAGGGGCTACTGGTACTGCTACTGGGGGGT
CCACAGAAGAAGAGACAACTCACGAGGTGCTTGCTCAGGTGGCTCACATC
AATAGACAATAGAAAACTAGACATTTATGGGATGCAGGATTCAACCCATG
GACACAAAAGGAGAGGGGCGAGTATGACGAGGTCATTTTTATGCGACTCC
ACTTTTATGGCACGATCAAGCTGCCGAGGGTGCCTACAGCGTGGCGCTCA
GAGCACACTTGCCAATTGGGGTTGCAACTTACGTACCGTATTGTAGATAG
GTCCGAGTCCTTAAGATCCCAGCATTTGTGATGCCATTTAGAGAGATTTC
TGCTGGCGAAAAACTTTCCTACTTCAGAGGGAATATTATAGGTACATTGC
GTTAACTGTGTGAATGGTAGAGGATATTCGTGAGAGATCGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig843:222636..223427+

>mRNA_F-serratus_M_contig843.19812.1 ID=mRNA_F-serratus_M_contig843.19812.1|Name=mRNA_F-serratus_M_contig843.19812.1|organism=Fucus serratus male|type=CDS|length=924bp|location=Sequence derived from alignment at F-serratus_M_contig843:222636..223427+ (Fucus serratus male)
ATTGGGGCCTCTTTGGTAGATGAACCGGAAGCCAAGGGCTGCGTTGTTGG
TGACGGTGGCAGCATTAACGGTGTCGGCGCAGGAGGAGGAAGTAACGGCG
AGTTGGAACACCCTCCTCAATCTGTGATGCCTGCACAGAGCGCTGAACGG
CAGCAACCGCAGCCGCAAAAACATAAGGATGGCGCACCTGAACGTGTAGG
GTTAGAAGGAGACGAGTCGGTGGAGCAACAACCTCGCCAAGAGCTAGACG
TGGGCAGCGAGTATCTCGACCAGAAAGGTGGTGGTAATGGTCAATTTTAT
GACGGTATCACGGGCGGGCCGACTTGTCCCCTCGGAGGCCGTCCCGAGGA
GCAGGGGAGTGGGCATCACGAAGGGGCTACTGGTACTGCTACTGGGGGGT
CCACAGAAGAAGAGACAACTCACGAGGTGCTTGCTCAGGTGGCTCACATC
AATAGACAATAGATTGGGGCCTCTTTGGTAGATGAACCGGAAGCCAAGGG
CTGCGTTGTTGGTGACGGTGGCAGCATTAACGGTGTCGGCGCAGGAGGAG
GAAGTAACGGCGAGTTGGAACACCCTCCTCAATCTGTGATGCCTGCACAG
AGCGCTGAACGGCAGCAACCGCAGCCGCAAAAACATAAGGATGGCGCACC
TGAACGTGTAGGGTTAGAAGGAGACGAGTCGGTGGAGCAACAACCTCGCC
AAGAGCTAGACGTGGGCAGCGAGTATCTCGACCAGAAAGGTGGTGGTAAT
GGTCAATTTTATGACGGTATCACGGGCGGGCCGACTTGTCCCCTCGGAGG
CCGTCCCGAGGAGCAGGGGAGTGGGCATCACGAAGGGGCTACTGGTACTG
CTACTGGGGGGTCCACAGAAGAAGAGACAACTCACGAGGTGCTTGCTCAG
GTGGCTCACATCAATAGACAATAG
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