mRNA_F-serratus_M_contig84.19786.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig84.19786.1
Unique NamemRNA_F-serratus_M_contig84.19786.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig84.19786.1 vs. uniprot
Match: A0A6H5KG66_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG66_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 2.730e-31
Identity = 86/160 (53.75%), Postives = 100/160 (62.50%), Query Frame = 1 
Query:   19 IPDAAAPAGVVIRVLISAAHASFLHMRVFPSTTAGQVCRKIADKLRQLPSEQAEHVLIAVYPR-SVNVSC------GDDLGEDIGVHSDDEVVGREPPADDRVMTTESFHGGGLE-----RLEIRRRRNGSRGQGGSIRHVLHTFRPEERLGELRLGVHE 462
            +P AA   GVVIR+LIS AHASFLHMRVFPSTTAGQVCRKI +KLRQLP+EQ E+VLIA+Y R S NVS       G       GV      VG +   +D       +  GG+      R + RRRR G      SIRH+LHTFR EERLGE+RLG+ E
Sbjct:  145 LPVAAPSEGVVIRILISGAHASFLHMRVFPSTTAGQVCRKIGEKLRQLPAEQNEYVLIAIYARPSRNVSDTGGGSNGPGHRHSAGVADRGAAVGGDEVDNDGA----GYTAGGVRDEHELRHDGRRRRRGEEEHQSSIRHILHTFRSEERLGEVRLGLPE 300
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BLAST of mRNA_F-serratus_M_contig84.19786.1 vs. uniprot
Match: D8LCW3_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW3_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.300e-26
Identity = 82/162 (50.62%), Postives = 93/162 (57.41%), Query Frame = 1 
Query:   19 IPDAAAPAGVVIRVLISAAHASFLHMRVFPSTTAGQVCRKIADKLRQLPSEQAEHVLIAVYPRSV-NVSCGDDLG---------EDIGVHSDDEVVGREPPADDRVMTTESFHGGGLERLEIRRRRNGSRGQG----GSIRHVLHTFRPEERLGELRLGVHE 462
            +P AA   GVVIRVLIS AHASFLHMRVFPSTTAGQVCRKI +KLRQLP+EQ E+VLIA+Y R   NVS   D G            GV      VG +   +     T    GGG +                    SIRH+LHTFR EERLGE+RLG+ E
Sbjct:  173 LPVAAPSEGVVIRVLISGAHASFLHMRVFPSTTAGQVCRKIGEKLRQLPAEQNEYVLIAIYARPARNVSSLSDTGGGSTGPGHRHSAGVADRGATVGGDEVDNYSAGYTA---GGGRDXXXXXXXXXXXXXXXXXHQSSIRHILHTFRSEERLGEVRLGLPE 331
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig84.19786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG66_9PHAE2.730e-3153.75PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LCW3_ECTSI1.300e-2650.62PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig84contigF-serratus_M_contig84:517696..522888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue1.3e-24
Seed eggNOG ortholog2880.D8LCW3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pleckstrin homology domain.
EggNOG OGs28P6I@1,2QVTE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size670
Cds size669
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig84.19786.1prot_F-serratus_M_contig84.19786.1Fucus serratus malepolypeptideF-serratus_M_contig84 517696..522888 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932481.306971-CDS-F-serratus_M_contig84:517695..5180021622932481.306971-CDS-F-serratus_M_contig84:517695..518002Fucus serratus maleCDSF-serratus_M_contig84 517696..518002 -
1690964329.8893516-CDS-F-serratus_M_contig84:517695..5180021690964329.8893516-CDS-F-serratus_M_contig84:517695..518002Fucus serratus maleCDSF-serratus_M_contig84 517696..518002 -
1622932481.3301926-CDS-F-serratus_M_contig84:520044..5202801622932481.3301926-CDS-F-serratus_M_contig84:520044..520280Fucus serratus maleCDSF-serratus_M_contig84 520045..520280 -
1690964329.902439-CDS-F-serratus_M_contig84:520044..5202801690964329.902439-CDS-F-serratus_M_contig84:520044..520280Fucus serratus maleCDSF-serratus_M_contig84 520045..520280 -
1622932481.3524613-CDS-F-serratus_M_contig84:522762..5228881622932481.3524613-CDS-F-serratus_M_contig84:522762..522888Fucus serratus maleCDSF-serratus_M_contig84 522763..522888 -
1690964329.912262-CDS-F-serratus_M_contig84:522762..5228881690964329.912262-CDS-F-serratus_M_contig84:522762..522888Fucus serratus maleCDSF-serratus_M_contig84 522763..522888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig84.19786.1

>prot_F-serratus_M_contig84.19786.1 ID=prot_F-serratus_M_contig84.19786.1|Name=mRNA_F-serratus_M_contig84.19786.1|organism=Fucus serratus male|type=polypeptide|length=223bp
DDGPTTIPDAAAPAGVVIRVLISAAHASFLHMRVFPSTTAGQVCRKIADK
LRQLPSEQAEHVLIAVYPRSVNVSCGDDLGEDIGVHSDDEVVGREPPADD
RVMTTESFHGGGLERLEIRRRRNGSRGQGGSIRHVLHTFRPEERLGELRL
GVHEVQPLPPRPTVDAAATPLARARSSEAAAGDEGYRGDDHDDEDGVGSY
KEASGDRLDRSNDEIDRDFGGGG
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mRNA from alignment at F-serratus_M_contig84:517696..522888-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig84.19786.1 ID=mRNA_F-serratus_M_contig84.19786.1|Name=mRNA_F-serratus_M_contig84.19786.1|organism=Fucus serratus male|type=mRNA|length=5193bp|location=Sequence derived from alignment at F-serratus_M_contig84:517696..522888- (Fucus serratus male)
GATGATGGGCCGACGACGATACCGGATGCGGCGGCTCCCGCGGGGGTGGT
TATCCGGGTGCTCATATCAGCGGCGCATGCATCGTTTCTGCACATGCGGG
TGTTTCCGTCGACCACAGCGGGTCAGGTGTGAACGTGGGAAGAGAAGATA
CCAGTTTATGCTGGGCATAATGACCTGTGTTGTGCATTCAGTATACGAAG
TGTATACCGCAGTGTTCGTAATAGGTGAAAAAGTTACCCAACCGGCGAGA
ATTTCCCCCACAGACACGTTTTCTCTTAATAACAGAGGGAGACTGTTTCA
AACAACCAGGCAGAAGAAATATCTTGCCAAGGACCATCCCCAACATAGGT
ACTTTTTACTTTTAGAGCGCGAGTGCACTCTGCGATCAAGTAAAAAGTAG
AGGGGGTAGGAGGGGAGGGAGAGGTTTTCTTTCGCCTGGGGGGAGGGGGG
GGAGGCGGGGGGGGGCGTTCTGTTTTAAGGTCACGATCCTACCGCCTCCG
ATACTTTCTGTATCACACACGTCCCCTATATACCAATAATAGTATATCGG
GTGTGGGAAAAGAGGCACGCATTAACTGGTCATAGTCCATGGTGAAACCT
GAAAAGGCAGCACCCGTTACTCGAACTACCTCGAGGACTACTGGCCCTGT
GCCAGCGAACTCTCGGCAGTGAATGCCATCTGTACGCAATTGGATGACTC
GATAAACTCGGGGCTGACCTGATATGGAGTATAAATAAATAAATGGGCGC
CACCGCGAAAAGCAGGAGGAATACCGTGAGTAAGCACCAGATTCAGCCCG
AGTGTGGAGATGAGCAGGCTGACGCGGGACGGGACGGCCGGACCTGTCTC
GCGAGATCAAATCTCAGGCGCGAACGGGGACAGGGAAATATTAATTTTAC
CTCTTCAGCTGACCACCGACAGGATTGACAACTTCATCCGGTTGATCCAT
ACTCTGCTTTAAGTGCCGACCATGCATACATACTTCGTACATACATACAT
ACATATAGAGGTTTTCGTAATAAGTTTCATTGATCCCCCCTTGGGAGGAT
CAATACGAGTGGCATAGAATGACTAGGATGACAGGGCCGGATTGCGCGGT
TATGTGCAATTTAATAAATACACATACATACACACATACATACATACATA
CATACATACATACATACATACATACATAAATATACATTCATTGATCCCCC
CTTGGGAGGATCAATACGAGTGGCATAGAATGACTAGGATGACAGGGCCG
GGTTGCGCGGTTATGTGCAATTTAATAAATATACATACATACATACATAC
ATACATACATACATACATACATACATACATACATACTTATAGACGAACAC
CGGATGGGAACGGGGAGAGAAAGGAGGTGAGTAGCGGAGAGGGGAACGGG
TACGAGGCGAACGGGAATGGGAACGGGAACGAGGGTGGGGTCGGGGAGGG
CGGAAGGGAGGATAAAAGCAAGAAACCGCTCAATAGTGGTAGACGCCGAG
TGAAACACGGTAAAGACTTCGATGGAAGGAGAAAAAGATGTAGAATAGAA
AGGGTTGGTCCAGTATCTGCCAATTTAGATAATCTAGAGAGTAGCAAGGA
AGCAGGGGGGGAGCACGAGGTGTCTGGGCTCAAGTAGGAACGGTACAAGT
AGAGAGTGTGTCCCCTTTGTCGCGTCTGATCAGAGGTTTTCGTAATAAGT
TTCATTGATCCCCCCTTGGGAGGATCAATACGAGTGGCATAGAATGACTA
GGATGACAGGGCCGGATTGCGCGGTTATGTGCAATTTAATAAATATTACA
TACATACTTTCACGAGGCAAGACTTGTTCCGACGTGATGTGAAGTCGTTC
AGCAACATGGTTTTCTCTGCAGTGGCTGAGATTTCTTCACGAGGCAAGAC
TTGTTCCGACGTGACGCCTAGATCTTCGCCACGCCTATGTTTTTCGACCC
TAAATTCTCGTCATATTCGACCGTGTGTGTACGTGTACTGTAGGCTGCCT
GTAAGTGGCAGGAAAGGCTTTTTATATACAAGAGACGGAGCCTTGAAAAG
ATATTGTCGAGGTCTACGTGCGTTAAAAGAAGTGCGACTGCTGGAGTTGC
AGAAAAAAAAACGTAGGGGGCGTGTGGAGAGAAAATATTTGTGTTCTACA
CTATCGCCATCGCTCCCGGTTCAATTCACTATTAATACTGGTATGATAGA
AAGCCCACCCATCTGCAATACCCCGTACACATGGTGTACATATAAACGTG
TAGTATACATTTTATAGAGGTGCGTATGGTCATCACCTAGACTTATTTGG
ACGCGTATGACGCAACTGCCTATACTACCATTATTATTAGTAACGACGTG
ATGTGGATAGGGGGGTCTCCGTCTTAAAACCCTTATACAGTACACAGTAT
GAGTATTGTGTTTATAGTACGTACGAGAGTGCAAGGGCTGCTGTTTTGTT
CACATTCCCACCAAAAATAAAATAAAATGTATCTAATATCTATATAGTAC
TGTATACAAATAAAACTCGCTTTTGCCTCCGAGGACTGAAAGCGCTCATG
GATGCAGTGCGTGCGAACGCGTGGCGTCGGGGGTCGGGTGTGGGGTGTGG
GGGGGAAGGTATGTCGCAAGATCGCAGATAAGCTGCGGCAGCTCCCGTCG
GAGCAGGCCGAGCATGTTCTCATCGCGGTTTATCCGCGCTCCGTCAACGT
CTCCTGCGGTGACGACCTGGGGGAAGACATCGGCGTCCACAGTGACGACG
AGGTTGTTGGTCGAGAGCCGCCGGCGGACGACAGGGTTATGACGACCGAG
AGCTTTCACGGGGGAGGGCTGGAGAGGCTGGAGATCAGGCGAAGGTGTGT
GTTTATAGATGTTAATATCTACGGACAGAGGCAAACTCTAAAAAGCCAGT
ACTCGGGCTTGCTGAGTTGAAAACATGAAAAAGTAAAATCCTTTTTTCAT
GTGTTCTTAGTCTTGTTTTGTTTTGAGCTTACGGCGAGCGGGGGTTAGAA
ATCTGCCGAGTTCGCCTATTAGCTGAAGAACGACACAACATCAGCAACTG
CTGTACAAGGTACTGACTTTACAGCAAGAAACCTATGCAGGGGGAGCGCT
CTAGAGCAATTTCCATTTTTTTTGCAGTCGTGTCTCCATCGGGGTTTCCT
ATACTGGAATGAGGCGTGCTGCGGGTGCTGCCGTCGGGGACAGACCGGAC
GCACCGCTGGTAGCTGTCGGGTTGTTCTACCCAATTACACACTGAAGTAC
ACATCGATTTATATTTTTTCCACTTTTCGATGTTTTGAAGGTTTCTATCG
CCGTTACTTTCAACATGCCCACTTCATAACCAATAGTGGGTGTGGGAAAG
AAAGGCGTATATTAATTGGTCCATAGTGACCTGCGAAGGCAGCACTCGTT
CGAAACTACCTTGAGGTATGCTGGCCCTGTGCCGGCGGATTCTCGGCAGT
GAACGCCATCGGTACGCAATTGCGTGACCCGATTTACTCGGGACTGACCC
GATGGCGTATGGCGGTTTAATATTAATATATGGACGCCGCCGCGGAACTC
GGGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGA
GCAGGCTGACGCGGGACGGGACTGCCGAAACCGTCTCGCGAGACCAAATT
CCCAGGCGCGAACGCGGACAGGGGAATATTATTTTCTCTGTTTAGCTGAC
CACGAGCAGGATTGGCAACCTTAACAGGTTGATCCATACTCTTGCTATAT
GTGTGACCATACATAAGTGTAGTAGCATACTTGTTAATGACACTCTCTCT
AGTAACTGTATTTTTTAGTACCTGGTACACCGTGAACAATCATGTGTATG
CGTGATTAGGGGGGGGGCGGGTTGGTTGGAAACCCCGGATGGCTTTTTCA
TGTCGAAAGATCCACAGAATCGTAAAGTGGAAACCCCTGATGGCTTTTTT
GTACGCGGAAAAGGAAGCAGCATCGTCGCAAGAATGTACCCACCCATCCA
CCCCTTCCGCCTCATGAAAAGCGCTCTTGAAAATAATATCAAGAAAATAC
CGAACGTATTTCTACCCCCGGGGCGTTGTCGCCTTAGATTTGTTTCGGCA
AGGAGGTGAAAAATAAAATAAAATATTATTTAGAAAAGAAAAGCCACTGC
GTTTTATCTTCTCTTATTCTGCTCCCGACGAAAAATAATAATTTCGGAAC
TTTCGAAAGAGACGAAAACGTCATGTATGCATGTATAGACTGCGTATACA
GAGCTATCGCAATATATTTTTAAAACTAAGTTTGTTTCGCCCTATTTTCT
ATCCCCTTCAAAGGCCGGTCGCCCCGGTAGCTCAGAGGTAACCTCGTAAC
CTTATGACACGTTGGGACGTGAGTTCGAATCCCGGTAAACGGGATTTTTC
TCACTAAATGAAAAGAAGAAAAAAAGCCCAACAAGTGGAGAACGAATAAA
TCGTTAGTACACAAAATTTGACTTCACGGTCGACGAGGGAAAGCAAGAGC
TGAATCCTTCTCGCGAGAAAAGTTAAGGCACGCACCGCAGAAGGAAGGTG
GATGAGAAGTCCTGTGTGACCTGCTTCCTGTGTGGCCCCGGCTGGTACAT
CCAACGAACTTGATGTCCAGAATAAATGGGAAGAAAACACACACACACAC
ACACACTACACCCTCCACCCCCCCGACGCACACACTTGTTTAGATCACCC
TTTTGGAACTTTGTGTACAGGTTTTCCATAGATTTGGAGGCGAAAGCAAA
GGCCGGGTACCCGTCTACGGATGAAGCAATATAACATTTTCTTTAAAAAG
TATAACTTGCACGAAAGTTTTGTTTCCGTGCTTTTTATCCCCTCCCCCCC
CCCCCTCCTTTTATATACCATAAAAAAAAATGACAGACGTAATGGATCCC
GAGGGCAGGGAGGCAGCATCAGGCACGTCCTGCACACCTTCCGCCCGGAG
GAGCGCCTGGGTGAGCTCCGTTTGGGAGTGCACGAAGTCCAGCCTCTTCC
GCCGCGGCCCACGGTTGACGCTGCGGCCACCCCTTTGGCGCGCGCGCGAT
CATCGGAAGCGGCAGCGGGCGACGAAGGGTACCGAGGTGACGACCACGAT
GACGAAGACGGGGTTGGTAGTTATAAGGAGGCGAGCGGGGACCGGTTGGA
TCGCAGTAACGACGAGATCGACCGAGATTTCGGGGGGGGTGGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig84:517696..522888-

>mRNA_F-serratus_M_contig84.19786.1 ID=mRNA_F-serratus_M_contig84.19786.1|Name=mRNA_F-serratus_M_contig84.19786.1|organism=Fucus serratus male|type=CDS|length=1338bp|location=Sequence derived from alignment at F-serratus_M_contig84:517696..522888- (Fucus serratus male)
GATGATGGGCCGACGACGATACCGGATGCGGCGGCTCCCGCGGGGGTGGT
TATCCGGGTGCTCATATCAGCGGCGCATGCATCGTTTCTGCACATGCGGG
TGTTTCCGTCGACCACAGCGGGTCAGGATGATGGGCCGACGACGATACCG
GATGCGGCGGCTCCCGCGGGGGTGGTTATCCGGGTGCTCATATCAGCGGC
GCATGCATCGTTTCTGCACATGCGGGTGTTTCCGTCGACCACAGCGGGTC
AGGTATGTCGCAAGATCGCAGATAAGCTGCGGCAGCTCCCGTCGGAGCAG
GCCGAGCATGTTCTCATCGCGGTTTATCCGCGCTCCGTCAACGTCTCCTG
CGGTGACGACCTGGGGGAAGACATCGGCGTCCACAGTGACGACGAGGTTG
TTGGTCGAGAGCCGCCGGCGGACGACAGGGTTATGACGACCGAGAGCTTT
CACGGGGGAGGGCTGGAGAGGCTGGAGATCAGGCGAAGGTATGTCGCAAG
ATCGCAGATAAGCTGCGGCAGCTCCCGTCGGAGCAGGCCGAGCATGTTCT
CATCGCGGTTTATCCGCGCTCCGTCAACGTCTCCTGCGGTGACGACCTGG
GGGAAGACATCGGCGTCCACAGTGACGACGAGGTTGTTGGTCGAGAGCCG
CCGGCGGACGACAGGGTTATGACGACCGAGAGCTTTCACGGGGGAGGGCT
GGAGAGGCTGGAGATCAGGCGAAGACGTAATGGATCCCGAGGGCAGGGAG
GCAGCATCAGGCACGTCCTGCACACCTTCCGCCCGGAGGAGCGCCTGGGT
GAGCTCCGTTTGGGAGTGCACGAAGTCCAGCCTCTTCCGCCGCGGCCCAC
GGTTGACGCTGCGGCCACCCCTTTGGCGCGCGCGCGATCATCGGAAGCGG
CAGCGGGCGACGAAGGGTACCGAGGTGACGACCACGATGACGAAGACGGG
GTTGGTAGTTATAAGGAGGCGAGCGGGGACCGGTTGGATCGCAGTAACGA
CGAGATCGACCGAGATTTCGGGGGGGGTGGTACGTAATGGATCCCGAGGG
CAGGGAGGCAGCATCAGGCACGTCCTGCACACCTTCCGCCCGGAGGAGCG
CCTGGGTGAGCTCCGTTTGGGAGTGCACGAAGTCCAGCCTCTTCCGCCGC
GGCCCACGGTTGACGCTGCGGCCACCCCTTTGGCGCGCGCGCGATCATCG
GAAGCGGCAGCGGGCGACGAAGGGTACCGAGGTGACGACCACGATGACGA
AGACGGGGTTGGTAGTTATAAGGAGGCGAGCGGGGACCGGTTGGATCGCA
GTAACGACGAGATCGACCGAGATTTCGGGGGGGGTGGT
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