mRNA_F-serratus_M_contig839.19761.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig839.19761.1
Unique NamemRNA_F-serratus_M_contig839.19761.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig839.19761.1 vs. uniprot
Match: A0A6H5L7W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W2_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 2.750e-111
Identity = 162/192 (84.38%), Postives = 177/192 (92.19%), Query Frame = 1 
Query:    1 VHKRQEKNPVLRHLRNVPFEITPGLLADFVLSPKACAVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVEDSEKPLLDINKTAVLNDFTFILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVVRSVNKSDVLTLASNLRSFEAMCDASAEELALCPGLGDKKVARIYEALHEPL 576
            VHKRQEKN +LRHLRNV FEITPGL+ADFVL PK CAVFISLRYHLLYPHYLIQRIKELS HFTLRVLLCHVDV+DSE PLL+INK AV NDFT +LAWSLQEAARYLETYKAYE KSA+SIQEKV+DD+L KLQDCFGVVRSVNKSDVLTLASN  S +A+CDA+A EL+LCPGLG+KKV+RI+EALHEPL
Sbjct:   83 VHKRQEKNSMLRHLRNVAFEITPGLVADFVLGPKTCAVFISLRYHLLYPHYLIQRIKELSGHFTLRVLLCHVDVDDSETPLLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVSRIHEALHEPL 274
[Close]
BLAST of mRNA_F-serratus_M_contig839.19761.1 vs. uniprot
Match: D7G4P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P9_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 8.930e-74
Identity = 115/145 (79.31%), Postives = 129/145 (88.97%), Query Frame = 1 
Query:  142 YPHYLIQRIKELSRHFTLRVLLCHVDVEDSEKPLLDINKTAVLNDFTFILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVVRSVNKSDVLTLASNLRSFEAMCDASAEELALCPGLGDKKVARIYEALHEPL 576
            +PH  +Q   ELS HFTLRVLLCHVDV+DSE PLL+INK AV NDFT +LAWSLQEAARYLETYKAYE KSA+SIQEKV+DD+L KLQDCFGVVRSVNKSDVLTLASN  S +A+CDA+A EL+LCPGLG+KKVARI+EALHEPL
Sbjct:    5 HPHIFMQ---ELSGHFTLRVLLCHVDVDDSETPLLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVARIHEALHEPL 146
[Close]
BLAST of mRNA_F-serratus_M_contig839.19761.1 vs. uniprot
Match: A0A835ZCX2_9STRA (Restriction endonuclease type II-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCX2_9STRA)

HSP 1 Score: 207 bits (527), Expect = 4.150e-64
Identity = 101/178 (56.74%), Postives = 132/178 (74.16%), Query Frame = 1 
Query:   40 LRNVPFEITPGLLADFVLSPKACAVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVEDSEKPLLDINKTAVLNDFTFILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVVRSVNKSDVLTLASNLRSFEAMCDASAEELALCPGLGDKKVARIYEALHEP 573
            +RNV +E   G++ DFV+SP ACA+F+S+RYH L P Y+ QRI+EL   F LR+LL  VD +D+   LL++NK AV  +FT +LAWS  EAARYLET+KA+E K   SIQEKVN DYLAK QD    V +VN++DV+TL S   S + +C+AS EE+ALCPGLGDKKV  +++ALH+P
Sbjct:    7 IRNVEYEFATGIMPDFVISPTACALFLSMRYHQLKPTYIAQRIEELRTSFRLRLLLVLVDQDDNVNLLLELNKMAVARNFTLLLAWSWPEAARYLETFKAFENKPPTSIQEKVNSDYLAKAQDALCTVHAVNRTDVVTLLSTFGSLQGLCEASMEEMALCPGLGDKKVVALHDALHQP 184
[Close]
BLAST of mRNA_F-serratus_M_contig839.19761.1 vs. uniprot
Match: A0A1D1ZHX7_9ARAE (DNA excision repair protein ERCC-1 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZHX7_9ARAE)

HSP 1 Score: 207 bits (527), Expect = 2.130e-63
Identity = 98/195 (50.26%), Postives = 141/195 (72.31%), Query Frame = 1 
Query:    1 VHKRQEKNPVLRHLRNVPFEITPGLLADFVLSPKACAVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVEDSEKPLLDINKTAVLNDFTFILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVVRSVNKSDVLTLASNLRSFEAMCDASAEELALCPGLGDKKVARIYEALHEPLSLT 585
            V  RQ+ NP+L+H+RNV +     ++ D++L   +CA++ISLRYHLL+P Y+  RI+EL ++F LRV+LCH+DVED  KPLL++ +TA+L+D + +  WSL+E  RYLET K YE KSA+SI+E+++ DYL++L      +R VNK+DV+TL S   S   + DAS EELA CPG+G++KV R+Y+  HEP   T
Sbjct:   18 VSHRQKGNPLLKHIRNVRWTFA-DVVCDYLLGQNSCALYISLRYHLLHPDYVYYRIRELQKNFKLRVVLCHIDVEDVAKPLLEVTRTALLHDCSLLCGWSLEECGRYLETIKVYENKSADSIREQMDTDYLSRLTHALTTIRHVNKTDVVTLGSAFGSLSRIMDASMEELARCPGIGERKVQRLYDTFHEPFRRT 211
[Close]
BLAST of mRNA_F-serratus_M_contig839.19761.1 vs. uniprot
Match: A0A835LMH1_9MAGN (Uncharacterized protein n=2 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LMH1_9MAGN)

HSP 1 Score: 209 bits (531), Expect = 6.220e-63
Identity = 99/191 (51.83%), Postives = 140/191 (73.30%), Query Frame = 1 
Query:    1 VHKRQEKNPVLRHLRNVPFEITPGLLADFVLSPKACAVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVEDSEKPLLDINKTAVLNDFTFILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVVRSVNKSDVLTLASNLRSFEAMCDASAEELALCPGLGDKKVARIYEALHEP 573
            V  RQ+ NP+L+H+RNV + +   ++ D++L   +CA+++SLRYHLL+P YL  RIKEL ++F LRV+LCHVDVED  KP+L++ KTA+L+D T + AWSL+E  RYLET K YE K A+ +Q +++ DYL++L      VR VNK+DV+TL SN  S   + D+S E+LA CPG+G+KKV R+Y+  HEP
Sbjct:  103 VSHRQKGNPLLKHIRNVKW-LFADIICDYLLGQNSCALYLSLRYHLLHPDYLYYRIKELQKNFKLRVVLCHVDVEDVVKPILEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADILQGQMDTDYLSRLNHALTAVRRVNKTDVVTLGSNFGSLSRIMDSSMEDLARCPGIGEKKVKRLYDTFHEP 292
[Close]
BLAST of mRNA_F-serratus_M_contig839.19761.1 vs. uniprot
Match: A0A5J4Y633_9CHLO (DNA excision repair ERCC-1-like (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y633_9CHLO)

HSP 1 Score: 205 bits (521), Expect = 1.040e-62
Identity = 102/200 (51.00%), Postives = 138/200 (69.00%), Query Frame = 1 
Query:    1 VHKRQEKNPVLRHLRNVPFEITPGLLADFVLSPKACAVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVEDSEKPLLDINKTAVLNDFTFILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVVRSVNKSDVLTLASNLRSFEAMCDASAEELALCPGLGDKKVARIYEALHEPLSLTQRKKR 600
            V KRQE NPVL+H+RNV ++    ++ D+ L   ACAVF+SLR+HLL P Y+  RIKEL R F LR+L+CH+DVED  +PL  + K A+LN+ T I  WS +E ARYLETYK+YE K A++IQ + ++DY+++L      VR VNK+DVLTL +  ++   +  AS EELA CPGLG  KV R++E  HEP     R++R
Sbjct:   17 VSKRQEGNPVLKHIRNVRWQFA-DIIPDYQLGQNACAVFLSLRFHLLKPEYVHHRIKELQRSFRLRLLICHIDVEDVVEPLAQVIKAALLNEVTLICGWSPEECARYLETYKSYETKPADAIQGRTDEDYISRLNSALTTVRGVNKTDVLTLGATFKTVTNIMQASMEELAACPGLGPTKVKRLHETFHEPFRKVVRQQR 215
[Close]
BLAST of mRNA_F-serratus_M_contig839.19761.1 vs. uniprot
Match: A0A6J0NQ48_RAPSA (DNA excision repair protein ERCC-1 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0NQ48_RAPSA)

HSP 1 Score: 208 bits (530), Expect = 1.680e-62
Identity = 102/191 (53.40%), Postives = 139/191 (72.77%), Query Frame = 1 
Query:    1 VHKRQEKNPVLRHLRNVPFEITPGLLADFVLSPKACAVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVEDSEKPLLDINKTAVLNDFTFILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVVRSVNKSDVLTLASNLRSFEAMCDASAEELALCPGLGDKKVARIYEALHEP 573
            V  RQ+ NP+L+H+RNV + +   ++ D++L    CA+++SLRYHLL+P YL  RI+EL R+F LRV+LCHVDVEDS KPLL++ KTA+L+D T + AWSL E ARYLET K YE K A+ IQ +++ DYL++L      +R VNKSDV+TL S   S   + DAS E+LA CPG+G++KV R+Y+  HEP
Sbjct:  128 VSNRQKGNPLLKHIRNVKW-VYSDIIPDYLLGQTTCALYLSLRYHLLHPDYLYFRIRELQRNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEP 317
[Close]
BLAST of mRNA_F-serratus_M_contig839.19761.1 vs. uniprot
Match: A0A1R3J334_9ROSI (DNA repair protein rad10 n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3J334_9ROSI)

HSP 1 Score: 206 bits (524), Expect = 1.700e-62
Identity = 98/191 (51.31%), Postives = 139/191 (72.77%), Query Frame = 1 
Query:    1 VHKRQEKNPVLRHLRNVPFEITPGLLADFVLSPKACAVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVEDSEKPLLDINKTAVLNDFTFILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVVRSVNKSDVLTLASNLRSFEAMCDASAEELALCPGLGDKKVARIYEALHEP 573
            V  RQ+ NP+L+H+RNV +     ++ D++LS  +CA+++SLRYHLL+P YL  RI+EL ++F LRV+LCHVDVED  KPLL++ KTA+L+D T +  WSL+E  RYLET K YE K A+ IQ +++ DYL++L      VR VNK+DV+T+ S   S  ++ DAS E+LA CPG+G++KV R+Y+  HEP
Sbjct:   62 VSHRQKGNPLLKHIRNVRWAFA-DIVCDYLLSQSSCALYLSLRYHLLHPDYLYYRIRELEKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCGWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLNHALTTVRHVNKTDVVTIGSTFGSLSSIMDASMEDLARCPGIGERKVKRLYDTFHEP 251
[Close]
BLAST of mRNA_F-serratus_M_contig839.19761.1 vs. uniprot
Match: A0A3S4NRY1_9MAGN (DNA excision repair protein ERCC-1 isoform X1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S4NRY1_9MAGN)

HSP 1 Score: 207 bits (526), Expect = 2.480e-62
Identity = 100/191 (52.36%), Postives = 139/191 (72.77%), Query Frame = 1 
Query:    1 VHKRQEKNPVLRHLRNVPFEITPGLLADFVLSPKACAVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVEDSEKPLLDINKTAVLNDFTFILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVVRSVNKSDVLTLASNLRSFEAMCDASAEELALCPGLGDKKVARIYEALHEP 573
            V  RQ+ NP+L+H+RNV +     +L D++L   +CA+++SLRYHLL+P YL  RI+EL ++F LRV+LCHVDVED  KPLL++ +TA+L+D T +  WSL+E  RYLET K YE K A+SIQE+++ DYL++L      VR VNK+DV+TL S   S   + DAS E+LA CPG+G++KV R+Y+  HEP
Sbjct:  107 VSHRQKGNPLLKHIRNVRWMFA-DVLCDYLLGQGSCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTRTALLHDCTLLCGWSLEECGRYLETIKVYENKPADSIQERMDTDYLSRLTHALTAVRHVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEP 296
[Close]
BLAST of mRNA_F-serratus_M_contig839.19761.1 vs. uniprot
Match: A0A022QX06_ERYGU (Uncharacterized protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022QX06_ERYGU)

HSP 1 Score: 207 bits (526), Expect = 2.980e-62
Identity = 100/191 (52.36%), Postives = 140/191 (73.30%), Query Frame = 1 
Query:    1 VHKRQEKNPVLRHLRNVPFEITPGLLADFVLSPKACAVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVEDSEKPLLDINKTAVLNDFTFILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVVRSVNKSDVLTLASNLRSFEAMCDASAEELALCPGLGDKKVARIYEALHEP 573
            V  RQ+ NP+L+H+RNV +     ++ D++L   +CA+++SLRYHLL+P YL  RI+EL ++F LRV+LCHVDVED  KPLL++ KTA+L+D T + AWSL+E  RYLET K YE KSAE IQ +++ DYL++L +    VR VNK+DV+TL S   S   + DAS ++LA CPG+G++KV R+Y+  HEP
Sbjct:  103 VSNRQKGNPLLKHIRNVRWAFA-DIVCDYLLGQNSCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKSAELIQGQMDMDYLSRLNNALTSVRHVNKTDVVTLGSTFGSLSNIMDASVDDLARCPGIGERKVKRLYDTFHEP 292
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig839.19761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7W2_9PHAE2.750e-11184.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4P9_ECTSI8.930e-7479.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZCX2_9STRA4.150e-6456.74Restriction endonuclease type II-like protein n=1 ... [more]
A0A1D1ZHX7_9ARAE2.130e-6350.26DNA excision repair protein ERCC-1 n=1 Tax=Anthuri... [more]
A0A835LMH1_9MAGN6.220e-6351.83Uncharacterized protein n=2 Tax=Coptis chinensis T... [more]
A0A5J4Y633_9CHLO1.040e-6251.00DNA excision repair ERCC-1-like (Fragment) n=1 Tax... [more]
A0A6J0NQ48_RAPSA1.680e-6253.40DNA excision repair protein ERCC-1 n=1 Tax=Raphanu... [more]
A0A1R3J334_9ROSI1.700e-6251.31DNA repair protein rad10 n=2 Tax=Corchorus TaxID=9... [more]
A0A3S4NRY1_9MAGN2.480e-6252.36DNA excision repair protein ERCC-1 isoform X1 n=1 ... [more]
A0A022QX06_ERYGU2.980e-6252.36Uncharacterized protein n=1 Tax=Erythranthe guttat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig839contigF-serratus_M_contig839:92031..93222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score230.7
Seed ortholog evalue6.1e-58
Seed eggNOG ortholog2880.D7G4P9
Preferred nameERCC1
KEGG koko:K01230,ko:K03514,ko:K10849,ko:K10898,ko:K14850
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko01524,ko03018,ko03420,ko03460,ko04141,map00510,map00513,map01100,map01524,map03018,map03420,map03460,map04141
KEGG ModuleM00073,M00074,M00393,M00413
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000014,GO:0000109,GO:0000110,GO:0000228,GO:0000280,GO:0000428,GO:0000710,GO:0000712,GO:0000720,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000733,GO:0000735,GO:0000736,GO:0000781,GO:0000784,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0001302,GO:0001325,GO:0001775,GO:0002200,GO:0002204,GO:0002208,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002312,GO:0002366,GO:0002376,GO:0002377,GO:0002381,GO:0002440,GO:0002443,GO:0002449,GO:0002460,GO:0002520,GO:0002562,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006290,GO:0006293,GO:0006294,GO:0006295,GO:0006296,GO:0006298,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006949,GO:0006950,GO:0006955,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0007548,GO:0007568,GO:0007569,GO:0008022,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0008406,GO:0008584,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009653,GO:0009791,GO:0009892,GO:0009893,GO:0009987,GO:0010165,GO:0010212,GO:0010213,GO:0010224,GO:0010259,GO:0010332,GO:0010604,GO:0010605,GO:0010638,GO:0010639,GO:0016043,GO:0016064,GO:0016444,GO:0016445,GO:0016447,GO:0016591,GO:0016787,GO:0016788,GO:0016888,GO:0016893,GO:0017108,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019724,GO:0019899,GO:0019904,GO:0019953,GO:0022402,GO:0022412,GO:0022413,GO:0022414,GO:0022607,GO:0030097,GO:0030154,GO:0030880,GO:0031323,GO:0031324,GO:0031325,GO:0031334,GO:0031593,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0033683,GO:0034622,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035166,GO:0035264,GO:0035822,GO:0035825,GO:0035861,GO:0036297,GO:0040007,GO:0042113,GO:0042592,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043240,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044798,GO:0045002,GO:0045132,GO:0045137,GO:0045165,GO:0045190,GO:0045321,GO:0045934,GO:0045935,GO:0046483,GO:0046546,GO:0046649,GO:0046661,GO:0046982,GO:0046983,GO:0048232,GO:0048256,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048569,GO:0048583,GO:0048585,GO:0048589,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051704,GO:0051716,GO:0055029,GO:0060249,GO:0060255,GO:0061458,GO:0061695,GO:0061819,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070522,GO:0070911,GO:0070914,GO:0071103,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090575,GO:0090656,GO:0090734,GO:0090737,GO:0097159,GO:0098687,GO:0098813,GO:0104004,GO:0140013,GO:0140030,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903046,GO:1904353,GO:1904354,GO:1904429,GO:1904431,GO:1904505,GO:1904506,GO:1905764,GO:1905765,GO:1990234,GO:1990391,GO:2001020,GO:2001021,GO:2001251,GO:2001252
EggNOG free text desc.meiotic mismatch repair
EggNOG OGsCOG5241@1,KOG2841@2759
EC2.1.1.287,2.7.7.19,3.2.1.113
COG Functional cat.L
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03016,ko03019,ko03400,ko04131
Exons4
Model size618
Cds size618
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig839.19761.1prot_F-serratus_M_contig839.19761.1Fucus serratus malepolypeptideF-serratus_M_contig839 92031..93222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932475.991885-CDS-F-serratus_M_contig839:92030..922731622932475.991885-CDS-F-serratus_M_contig839:92030..92273Fucus serratus maleCDSF-serratus_M_contig839 92031..92273 -
1690964327.2999544-CDS-F-serratus_M_contig839:92030..922731690964327.2999544-CDS-F-serratus_M_contig839:92030..92273Fucus serratus maleCDSF-serratus_M_contig839 92031..92273 -
1622932476.0150676-CDS-F-serratus_M_contig839:92530..925991622932476.0150676-CDS-F-serratus_M_contig839:92530..92599Fucus serratus maleCDSF-serratus_M_contig839 92531..92599 -
1690964327.3123622-CDS-F-serratus_M_contig839:92530..925991690964327.3123622-CDS-F-serratus_M_contig839:92530..92599Fucus serratus maleCDSF-serratus_M_contig839 92531..92599 -
1622932476.0379288-CDS-F-serratus_M_contig839:92790..929251622932476.0379288-CDS-F-serratus_M_contig839:92790..92925Fucus serratus maleCDSF-serratus_M_contig839 92791..92925 -
1690964327.321723-CDS-F-serratus_M_contig839:92790..929251690964327.321723-CDS-F-serratus_M_contig839:92790..92925Fucus serratus maleCDSF-serratus_M_contig839 92791..92925 -
1622932476.0541239-CDS-F-serratus_M_contig839:93051..932221622932476.0541239-CDS-F-serratus_M_contig839:93051..93222Fucus serratus maleCDSF-serratus_M_contig839 93052..93222 -
1690964327.3307805-CDS-F-serratus_M_contig839:93051..932221690964327.3307805-CDS-F-serratus_M_contig839:93051..93222Fucus serratus maleCDSF-serratus_M_contig839 93052..93222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig839.19761.1

>prot_F-serratus_M_contig839.19761.1 ID=prot_F-serratus_M_contig839.19761.1|Name=mRNA_F-serratus_M_contig839.19761.1|organism=Fucus serratus male|type=polypeptide|length=206bp
VHKRQEKNPVLRHLRNVPFEITPGLLADFVLSPKACAVFISLRYHLLYPH
YLIQRIKELSRHFTLRVLLCHVDVEDSEKPLLDINKTAVLNDFTFILAWS
LQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVVRSVNKSDVL
TLASNLRSFEAMCDASAEELALCPGLGDKKVARIYEALHEPLSLTQRKKR
SRQET*
back to top

mRNA from alignment at F-serratus_M_contig839:92031..93222-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig839.19761.1 ID=mRNA_F-serratus_M_contig839.19761.1|Name=mRNA_F-serratus_M_contig839.19761.1|organism=Fucus serratus male|type=mRNA|length=1192bp|location=Sequence derived from alignment at F-serratus_M_contig839:92031..93222- (Fucus serratus male)
GTGCACAAGCGCCAGGAGAAGAACCCTGTACTCCGCCACCTGCGAAACGT
ACCTTTCGAAATTACCCCGGGGCTCCTTGCTGACTTCGTTCTCAGCCCGA
AAGCGTGCGCTGTTTTCATTAGCCTGAGGTACCACCTCCTTTACCCTCAC
TACCTGATCCAACGAATCAAGGTAAGATTTTTTCGGATTTCCCGTTTCTC
AATGCGTCATCTTAATATATTGTTTGTTTATCAAATTGAACTGTCGGATG
CTCGTTGAAAATAAGCCAACACTCTCATTGCCGATGCTGTCGCACAGGAA
TTGTCGAGACATTTTACCTTGCGGGTACTACTGTGCCATGTTGACGTCGA
GGACAGCGAGAAGCCCCTCCTTGATATCAATAAGACGGCTGTACTAAACG
ACTTCACGTTCATCCTGGCGTGGAGTCTACAGGTGGTGCAGTAGAACATC
TCAATGCCTCCAAGTTCAGATCAAGTCCTGTTACGACCTGGCTCATCTTA
CAGCCCATGTTTACAGTTTGTCCCTATTCCACGCGACGCATTCACCGACA
GTTACTTGGGCACCGACAGGCTAACCGGTTCGAACATAACACCTCCCCAT
TGTGTGCCCCTATCGAACAACAGGAGGCCGCCAGATACTTGGAAACATAC
AAGGCATACGAACAGAAATCGGCAGAAAGCATCCAAGAAAAGGTCGAAGT
GATGGGCGTTCTGTTCCGAGAATAACTATTTATACTGTAACTGGTCATGG
TTTAGGTACACAACGCTCCCGTGCGCGCTGCGTGACCCCTCACCTCTCAC
GGCTCTTGAGGGATCAACAACTCAACAACTGATTCGTTTCTTGTAAAACA
GAGGCCGAACCACCCTGCTAACCGCACCGTTACCCCAACCGTTACCGGTG
CGTCCGATACCCCACTTTCTCGCCCCGCAAAATCCTGTTCTTTTTATAGG
TTAACGACGACTACCTCGCAAAACTACAGGACTGCTTTGGAGTAGTTCGA
TCCGTCAATAAGTCTGATGTACTTACGCTAGCGTCGAACTTGAGGTCATT
CGAAGCTATGTGCGACGCCTCTGCCGAGGAGCTTGCGCTGTGTCCAGGTC
TTGGGGACAAAAAGGTGGCGAGAATATACGAGGCCTTGCACGAGCCGCTG
TCGCTTACTCAACGGAAAAAGCGTAGCCGACAAGAAACGTAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig839:92031..93222-

>mRNA_F-serratus_M_contig839.19761.1 ID=mRNA_F-serratus_M_contig839.19761.1|Name=mRNA_F-serratus_M_contig839.19761.1|organism=Fucus serratus male|type=CDS|length=1236bp|location=Sequence derived from alignment at F-serratus_M_contig839:92031..93222- (Fucus serratus male)
GTGCACAAGCGCCAGGAGAAGAACCCTGTACTCCGCCACCTGCGAAACGT
ACCTTTCGAAATTACCCCGGGGCTCCTTGCTGACTTCGTTCTCAGCCCGA
AAGCGTGCGCTGTTTTCATTAGCCTGAGGTACCACCTCCTTTACCCTCAC
TACCTGATCCAACGAATCAAGGTGCACAAGCGCCAGGAGAAGAACCCTGT
ACTCCGCCACCTGCGAAACGTACCTTTCGAAATTACCCCGGGGCTCCTTG
CTGACTTCGTTCTCAGCCCGAAAGCGTGCGCTGTTTTCATTAGCCTGAGG
TACCACCTCCTTTACCCTCACTACCTGATCCAACGAATCAAGGAATTGTC
GAGACATTTTACCTTGCGGGTACTACTGTGCCATGTTGACGTCGAGGACA
GCGAGAAGCCCCTCCTTGATATCAATAAGACGGCTGTACTAAACGACTTC
ACGTTCATCCTGGCGTGGAGTCTACAGGAATTGTCGAGACATTTTACCTT
GCGGGTACTACTGTGCCATGTTGACGTCGAGGACAGCGAGAAGCCCCTCC
TTGATATCAATAAGACGGCTGTACTAAACGACTTCACGTTCATCCTGGCG
TGGAGTCTACAGGAGGCCGCCAGATACTTGGAAACATACAAGGCATACGA
ACAGAAATCGGCAGAAAGCATCCAAGAAAAGGAGGCCGCCAGATACTTGG
AAACATACAAGGCATACGAACAGAAATCGGCAGAAAGCATCCAAGAAAAG
GTTAACGACGACTACCTCGCAAAACTACAGGACTGCTTTGGAGTAGTTCG
ATCCGTCAATAAGTCTGATGTACTTACGCTAGCGTCGAACTTGAGGTCAT
TCGAAGCTATGTGCGACGCCTCTGCCGAGGAGCTTGCGCTGTGTCCAGGT
CTTGGGGACAAAAAGGTGGCGAGAATATACGAGGCCTTGCACGAGCCGCT
GTCGCTTACTCAACGGAAAAAGCGTAGCCGACAAGAAACGTAGGTTAACG
ACGACTACCTCGCAAAACTACAGGACTGCTTTGGAGTAGTTCGATCCGTC
AATAAGTCTGATGTACTTACGCTAGCGTCGAACTTGAGGTCATTCGAAGC
TATGTGCGACGCCTCTGCCGAGGAGCTTGCGCTGTGTCCAGGTCTTGGGG
ACAAAAAGGTGGCGAGAATATACGAGGCCTTGCACGAGCCGCTGTCGCTT
ACTCAACGGAAAAAGCGTAGCCGACAAGAAACGTAG
back to top