mRNA_F-serratus_M_contig838.19756.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig838.19756.1
Unique NamemRNA_F-serratus_M_contig838.19756.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig838.19756.1 vs. uniprot
Match: D7G0J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J1_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 4.750e-87
Identity = 135/178 (75.84%), Postives = 152/178 (85.39%), Query Frame = 1 
Query:    1 MSRDPVKARKELDELSEVFPSPDDVVSEDEEASDNEEYGRRRVPKERWGTIDGCTPNEHFFARMQGAKQGERMTTAVKTQAEKNKFDREVFQFLITPEMRRQLGGHP-AIQAIDFDRFAEKWNEDVGEMERNEVAGRLEISGDVNKKINRKAPFDLQNWWTESKKDINTARTVEQNKD 531
            MSRDP +ARKELD LSEVFP  D   SEDE A+D EE  RR  PK RWGT+DGCTPNE FFARMQGA  GERMTTAV TQAEK+KFDREVFQFL++PE+R+Q+ GH    Q+I+FD FA KWNEDVGE+ERNEVAGRLE+SGD NKKINRKAPFDLQ+WWTES+K++NTARTVEQNKD
Sbjct:    1 MSRDPAQARKELDGLSEVFPLDDGDGSEDEGAADAEEDERRDAPKARWGTVDGCTPNERFFARMQGATPGERMTTAVITQAEKDKFDREVFQFLVSPEVRQQVAGHRRGTQSINFDAFAAKWNEDVGEIERNEVAGRLEVSGDANKKINRKAPFDLQSWWTESRKEVNTARTVEQNKD 178
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig838.19756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0J1_ECTSI4.750e-8775.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig838contigF-serratus_M_contig838:187898..189067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size673
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig838.19756.1prot_F-serratus_M_contig838.19756.1Fucus serratus malepolypeptideF-serratus_M_contig838 187914..189067 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932475.0334334-UTR-F-serratus_M_contig838:187897..1879131622932475.0334334-UTR-F-serratus_M_contig838:187897..187913Fucus serratus maleUTRF-serratus_M_contig838 187898..187913 -
1690964326.7627568-UTR-F-serratus_M_contig838:187897..1879131690964326.7627568-UTR-F-serratus_M_contig838:187897..187913Fucus serratus maleUTRF-serratus_M_contig838 187898..187913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932475.0513735-CDS-F-serratus_M_contig838:187913..1883941622932475.0513735-CDS-F-serratus_M_contig838:187913..188394Fucus serratus maleCDSF-serratus_M_contig838 187914..188394 -
1690964326.772438-CDS-F-serratus_M_contig838:187913..1883941690964326.772438-CDS-F-serratus_M_contig838:187913..188394Fucus serratus maleCDSF-serratus_M_contig838 187914..188394 -
1622932475.0660937-CDS-F-serratus_M_contig838:188891..1890671622932475.0660937-CDS-F-serratus_M_contig838:188891..189067Fucus serratus maleCDSF-serratus_M_contig838 188892..189067 -
1690964326.7908475-CDS-F-serratus_M_contig838:188891..1890671690964326.7908475-CDS-F-serratus_M_contig838:188891..189067Fucus serratus maleCDSF-serratus_M_contig838 188892..189067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig838.19756.1

>prot_F-serratus_M_contig838.19756.1 ID=prot_F-serratus_M_contig838.19756.1|Name=mRNA_F-serratus_M_contig838.19756.1|organism=Fucus serratus male|type=polypeptide|length=219bp
MSRDPVKARKELDELSEVFPSPDDVVSEDEEASDNEEYGRRRVPKERWGT
IDGCTPNEHFFARMQGAKQGERMTTAVKTQAEKNKFDREVFQFLITPEMR
RQLGGHPAIQAIDFDRFAEKWNEDVGEMERNEVAGRLEISGDVNKKINRK
APFDLQNWWTESKKDINTARTVEQNKDFKAKYRGPSSRPRDRNGSSIFIP
IRTRRSQNSTTARPFGRR*
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mRNA from alignment at F-serratus_M_contig838:187898..189067-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig838.19756.1 ID=mRNA_F-serratus_M_contig838.19756.1|Name=mRNA_F-serratus_M_contig838.19756.1|organism=Fucus serratus male|type=mRNA|length=1170bp|location=Sequence derived from alignment at F-serratus_M_contig838:187898..189067- (Fucus serratus male)
ATGTCGCGGGATCCTGTCAAAGCGCGCAAGGAGCTGGATGAGCTTTCCGA
GGTCTTCCCTAGCCCCGACGACGTTGTATCGGAAGACGAGGAGGCATCTG
ATAACGAAGAGTATGGACGCCGCCGTGTACCCAAGGAGAGGTGGGGAACT
ATCGATGGATGCACCCCAAATGAGCAGTGAGTCTTTCAACTGAGAGCACT
GTCCATCTACTACTAGAGTAAATCTCTTCTACTCCACCCGCACAGTTTGG
GTGAAAAGTAGCGAGTTCCCCCGGATCAATTTTTTCCTTCTTTTTTGCTG
CGCCTCCTTCTTCAGTTACACAGATTTTTTCCTCCCGATTGTTCTGGGGG
GTATGGTTTAAAGTCGTCAAAGCAGGTGTTTGCTGGTAGATGCCGCTCAG
TGGTCCAAAATCATGTTACGAAGGAAGAAAGGGGGGTGTCGTGTTATTTT
TCAAAAACACGCAATCTGTGGGATGTTCTCTCGAGGCTACTGCTTCTCTC
TATAGATCGCCCCCCTCACTCGAATGTTCCCCCAGCGCTGCGAACCAATC
TAGTGGCTCAAGTTTACGGCGGTCGGTTTTGCTTTTCTTCTGAGCCCCAT
TACGCCGGATACACGAAACTACCCACTGCTGCACTTGGTGATGGACTCGT
TTCGTGTGTTGGTCCGCTCGCAGCTTCTTTGCTCGGATGCAAGGCGCAAA
ACAAGGAGAGCGCATGACTACTGCCGTCAAGACTCAGGCAGAAAAAAACA
AGTTCGATCGCGAGGTTTTTCAGTTCTTGATCACCCCGGAGATGAGGCGG
CAACTTGGTGGTCATCCTGCGATCCAAGCCATCGACTTCGATCGCTTTGC
GGAGAAGTGGAACGAGGACGTCGGCGAAATGGAGAGAAACGAGGTGGCCG
GTCGCTTGGAAATCAGCGGCGATGTCAACAAGAAGATAAACCGCAAGGCG
CCTTTCGACCTGCAGAACTGGTGGACCGAATCAAAGAAAGACATCAACAC
CGCGCGCACGGTGGAGCAGAACAAAGACTTCAAAGCGAAGTACCGCGGAC
CAAGCAGCCGTCCGCGTGACCGAAACGGGAGCTCGATTTTCATTCCCATT
CGTACACGTCGATCTCAAAACTCTACCACGGCCCGCCCCTTCGGCCGCCG
ATGAAGCTCGATATGATGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig838:187898..189067-

>mRNA_F-serratus_M_contig838.19756.1 ID=mRNA_F-serratus_M_contig838.19756.1|Name=mRNA_F-serratus_M_contig838.19756.1|organism=Fucus serratus male|type=CDS|length=1314bp|location=Sequence derived from alignment at F-serratus_M_contig838:187898..189067- (Fucus serratus male)
ATGTCGCGGGATCCTGTCAAAGCGCGCAAGGAGCTGGATGAGCTTTCCGA
GGTCTTCCCTAGCCCCGACGACGTTGTATCGGAAGACGAGGAGGCATCTG
ATAACGAAGAGTATGGACGCCGCCGTGTACCCAAGGAGAGGTGGGGAACT
ATCGATGGATGCACCCCAAATGAGCAATGTCGCGGGATCCTGTCAAAGCG
CGCAAGGAGCTGGATGAGCTTTCCGAGGTCTTCCCTAGCCCCGACGACGT
TGTATCGGAAGACGAGGAGGCATCTGATAACGAAGAGTATGGACGCCGCC
GTGTACCCAAGGAGAGGTGGGGAACTATCGATGGATGCACCCCAAATGAG
CACTTCTTTGCTCGGATGCAAGGCGCAAAACAAGGAGAGCGCATGACTAC
TGCCGTCAAGACTCAGGCAGAAAAAAACAAGTTCGATCGCGAGGTTTTTC
AGTTCTTGATCACCCCGGAGATGAGGCGGCAACTTGGTGGTCATCCTGCG
ATCCAAGCCATCGACTTCGATCGCTTTGCGGAGAAGTGGAACGAGGACGT
CGGCGAAATGGAGAGAAACGAGGTGGCCGGTCGCTTGGAAATCAGCGGCG
ATGTCAACAAGAAGATAAACCGCAAGGCGCCTTTCGACCTGCAGAACTGG
TGGACCGAATCAAAGAAAGACATCAACACCGCGCGCACGGTGGAGCAGAA
CAAAGACTTCAAAGCGAAGTACCGCGGACCAAGCAGCCGTCCGCGTGACC
GAAACGGGAGCTCGATTTTCATTCCCATTCGTACACGTCGATCTCAAAAC
TCTACCACGGCCCGCCCCTTCGGCCGCCGATGACTTCTTTGCTCGGATGC
AAGGCGCAAAACAAGGAGAGCGCATGACTACTGCCGTCAAGACTCAGGCA
GAAAAAAACAAGTTCGATCGCGAGGTTTTTCAGTTCTTGATCACCCCGGA
GATGAGGCGGCAACTTGGTGGTCATCCTGCGATCCAAGCCATCGACTTCG
ATCGCTTTGCGGAGAAGTGGAACGAGGACGTCGGCGAAATGGAGAGAAAC
GAGGTGGCCGGTCGCTTGGAAATCAGCGGCGATGTCAACAAGAAGATAAA
CCGCAAGGCGCCTTTCGACCTGCAGAACTGGTGGACCGAATCAAAGAAAG
ACATCAACACCGCGCGCACGGTGGAGCAGAACAAAGACTTCAAAGCGAAG
TACCGCGGACCAAGCAGCCGTCCGCGTGACCGAAACGGGAGCTCGATTTT
CATTCCCATTCGTACACGTCGATCTCAAAACTCTACCACGGCCCGCCCCT
TCGGCCGCCGATGA
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