mRNA_F-serratus_M_contig837.19747.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig837.19747.1
Unique NamemRNA_F-serratus_M_contig837.19747.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig837.19747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig837contigF-serratus_M_contig837:112831..114808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1022
Cds size450
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig837.19747.1prot_F-serratus_M_contig837.19747.1Fucus serratus malepolypeptideF-serratus_M_contig837 113403..114808 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932473.378847-UTR-F-serratus_M_contig837:112830..1134021622932473.378847-UTR-F-serratus_M_contig837:112830..113402Fucus serratus maleUTRF-serratus_M_contig837 112831..113402 +
1690964325.908552-UTR-F-serratus_M_contig837:112830..1134021690964325.908552-UTR-F-serratus_M_contig837:112830..113402Fucus serratus maleUTRF-serratus_M_contig837 112831..113402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932473.394474-CDS-F-serratus_M_contig837:113402..1136461622932473.394474-CDS-F-serratus_M_contig837:113402..113646Fucus serratus maleCDSF-serratus_M_contig837 113403..113646 +
1690964325.9214137-CDS-F-serratus_M_contig837:113402..1136461690964325.9214137-CDS-F-serratus_M_contig837:113402..113646Fucus serratus maleCDSF-serratus_M_contig837 113403..113646 +
1622932473.4064305-CDS-F-serratus_M_contig837:114089..1142311622932473.4064305-CDS-F-serratus_M_contig837:114089..114231Fucus serratus maleCDSF-serratus_M_contig837 114090..114231 +
1690964325.9317613-CDS-F-serratus_M_contig837:114089..1142311690964325.9317613-CDS-F-serratus_M_contig837:114089..114231Fucus serratus maleCDSF-serratus_M_contig837 114090..114231 +
1622932473.422103-CDS-F-serratus_M_contig837:114744..1148081622932473.422103-CDS-F-serratus_M_contig837:114744..114808Fucus serratus maleCDSF-serratus_M_contig837 114745..114808 +
1690964325.9423647-CDS-F-serratus_M_contig837:114744..1148081690964325.9423647-CDS-F-serratus_M_contig837:114744..114808Fucus serratus maleCDSF-serratus_M_contig837 114745..114808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig837.19747.1

>prot_F-serratus_M_contig837.19747.1 ID=prot_F-serratus_M_contig837.19747.1|Name=mRNA_F-serratus_M_contig837.19747.1|organism=Fucus serratus male|type=polypeptide|length=150bp
MILSEQREGPGYDPNRGSSSSARLGPGEGKGDSGLRRSTPNRLRGKRVWK
AYHKRQMLLAKDRQRCRALCGESGDEHRRLPDINGRAAGVAAIAAARNQP
SAVRFNREGVEFTADALGANGCFIDVYNRRGHGSLKARAVGACGHAAGGK
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mRNA from alignment at F-serratus_M_contig837:112831..114808+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig837.19747.1 ID=mRNA_F-serratus_M_contig837.19747.1|Name=mRNA_F-serratus_M_contig837.19747.1|organism=Fucus serratus male|type=mRNA|length=1978bp|location=Sequence derived from alignment at F-serratus_M_contig837:112831..114808+ (Fucus serratus male)
GGCACCGGAAAAGGAGCCTTAAGGATAAGAAAAAGAAGAATTGAGAGCAA
GTTAAGGAGGAGCGGATATCGGCGACAACGAGCGGAGCCTCAGCTACAGT
GCGCCGCCGACCGCCGGAAGCTTAACTTTCGTCTCCGTAATAAGTATTAT
TAGTGCAGCAACACTCGTTTTCCAGCAGAACGAGAGGATCGAGAGAGAGA
GAAGAAAAAAAAACTCTTCGCCTGCGCTGACGGTGAGGATCCTCCGCTTG
GGAAGGAGGGAGCGTTTCTAGCGGTCGAGCGTGGCTTCGTTCCGATCCAC
CAAGTCAAATACCACGAGAAGCGTGTATTTCATTGAAAACAAAAACAAAA
AACTAATAGCTGTATTTTTTCAGCGAGACGGGGCGGAGAGCGGACGGCAC
CGGGCGACGAGAGAGGAATCGAAAAGGACCAGAGAGGGGAAGTCCTGGGG
GAACGAAGTGGGCACAGCCAGGACTAAGGGAGGACCAATACGCCGATCCC
TCGGTTTTACCTGGGCCAAAAGCTTTCCCGAGGAGCAATCGAGCGACGCA
GACCACTTGGCACGCCATAGACATGATCCTAAGCGAGCAGCGCGAAGGCC
CCGGCTATGACCCCAACAGAGGTTCGTCATCCAGCGCTCGCCTCGGCCCT
GGCGAGGGCAAAGGCGACAGCGGATTGCGGCGCTCCACGCCCAACCGCCT
GCGGGGGAAGCGCGTCTGGAAGGCTTACCACAAGCGACAGATGCTACTGG
CCAAGGATCGTCAGCGCTGTCGGGCGCTGTGCGGGGAGAGCGGCGATGAA
CACCGTCGCTTGCCAGGTGCAGTCGTGTGTAACGCGATATCGGTGTGGGG
AAGCAGTGCTCGTAGTGCCGTACGGAATTCTGCTGCTGTCCCCATTGTTG
GGAGGGGATTTTGTATTATTTTTTGTATTATTGTTCGGGGGGGAGGGGGG
GGGGTTCCCCTTATCGAGACGGAGTGGGGAGGAGTCGTTTTGTCTTTCGT
TTTGTATTTGCGGTGGGGGGGTTCGGAGGGGGGTGTTTCCGAAGCGCGTA
TCTGACGGTCATGTGTAGTTAATGTTACGTTTTTCGCCTCGCCTGTTGAA
AAATAATATCCTGTGCATGTATTGGTGTTTGACTTCATTGAGGAGGCGTG
CGTTGATCTCGTCGAGTGAACTCGGCGGCGAAACGGCGGCCACGTTTCGT
TTCTTGGCGTAAACGGTAATGTTTTTCATTTCTGGAGGGTCGATCCGCAC
CTCGCACAGATATTAACGGTCGCGCGGCTGGAGTGGCGGCGATTGCGGCA
GCTAGGAATCAGCCGAGCGCTGTCCGGTTCAACCGCGAGGGCGTGGAATT
CACGGCGGACGCGCTCGGCGCCAACGGTTGTTTCATCGATGTTTACAACA
GGCGAGTAAGCAGCGGAGCCACGTGCATCGAACTGAGAGAACAGAACAAA
GTCACACCGGGGAGCAGGTCGAGCATTTCTGGTCATATGATGGCCATGGT
CGACAGTGTGTGATCCTGTCTTGTTCTTTCTTAGGGGGGGGGGTTCCCCG
TAAATGCGATCCTTGGTCTCCCACCCTCGCGCCCCTCGTGCCTGTGTATC
TCCCGGCTTACTCTAACATAAGAAATACTACGGTATTAATATTACTGCAG
CACTGTTTACTTTCTGTCTTTCGCTATTAATAGAACTACTGTAATCGAAA
CGCCCCACAACTACGCTGTTATTTTTGGTATACAGCACACTCTATACTAG
ATATATATAGACGTCACACCGGTGCTGATTTTACCAATATGCCAGGTATG
CTGCATGTTTTTTATCTCCTTTCCTTCCCATGTCGAGTCTCGAGTCGTTC
AAGAAAATGTATATTTCATTTTGTTTTGTTTTTGAAAAAAAAACGGCGGC
GGCGGCGGCGGCAGGCGTGGTCACGGCAGCCTCAAAGCGCGGGCCGTGGG
AGCCTGCGGGCACGCGGCGGGAGGGAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig837:112831..114808+

>mRNA_F-serratus_M_contig837.19747.1 ID=mRNA_F-serratus_M_contig837.19747.1|Name=mRNA_F-serratus_M_contig837.19747.1|organism=Fucus serratus male|type=CDS|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig837:112831..114808+ (Fucus serratus male)
ATGATCCTAAGCGAGCAGCGCGAAGGCCCCGGCTATGACCCCAACAGAGG
TTCGTCATCCAGCGCTCGCCTCGGCCCTGGCGAGGGCAAAGGCGACAGCG
GATTGCGGCGCTCCACGCCCAACCGCCTGCGGGGGAAGCGCGTCTGGAAG
GCTTACCACAAGCGACAGATGCTACTGGCCAAGGATCGTCAGCGCTGTCG
GGCGCTGTGCGGGGAGAGCGGCGATGAACACCGTCGCTTGCCAGATGATC
CTAAGCGAGCAGCGCGAAGGCCCCGGCTATGACCCCAACAGAGGTTCGTC
ATCCAGCGCTCGCCTCGGCCCTGGCGAGGGCAAAGGCGACAGCGGATTGC
GGCGCTCCACGCCCAACCGCCTGCGGGGGAAGCGCGTCTGGAAGGCTTAC
CACAAGCGACAGATGCTACTGGCCAAGGATCGTCAGCGCTGTCGGGCGCT
GTGCGGGGAGAGCGGCGATGAACACCGTCGCTTGCCAGATATTAACGGTC
GCGCGGCTGGAGTGGCGGCGATTGCGGCAGCTAGGAATCAGCCGAGCGCT
GTCCGGTTCAACCGCGAGGGCGTGGAATTCACGGCGGACGCGCTCGGCGC
CAACGGTTGTTTCATCGATGTTTACAACAGATATTAACGGTCGCGCGGCT
GGAGTGGCGGCGATTGCGGCAGCTAGGAATCAGCCGAGCGCTGTCCGGTT
CAACCGCGAGGGCGTGGAATTCACGGCGGACGCGCTCGGCGCCAACGGTT
GTTTCATCGATGTTTACAACAGGCGTGGTCACGGCAGCCTCAAAGCGCGG
GCCGTGGGAGCCTGCGGGCACGCGGCGGGAGGGAAGGCGTGGTCACGGCA
GCCTCAAAGCGCGGGCCGTGGGAGCCTGCGGGCACGCGGCGGGAGGGAAG
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