mRNA_F-serratus_M_contig837.19746.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig837.19746.1
Unique NamemRNA_F-serratus_M_contig837.19746.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig837.19746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig837contigF-serratus_M_contig837:109193..112667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1100
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig837.19746.1prot_F-serratus_M_contig837.19746.1Fucus serratus malepolypeptideF-serratus_M_contig837 109515..112462 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932472.637221-UTR-F-serratus_M_contig837:109192..1095141622932472.637221-UTR-F-serratus_M_contig837:109192..109514Fucus serratus maleUTRF-serratus_M_contig837 109193..109514 +
1690964325.4611492-UTR-F-serratus_M_contig837:109192..1095141690964325.4611492-UTR-F-serratus_M_contig837:109192..109514Fucus serratus maleUTRF-serratus_M_contig837 109193..109514 +
1622932472.698407-UTR-F-serratus_M_contig837:112462..1126671622932472.698407-UTR-F-serratus_M_contig837:112462..112667Fucus serratus maleUTRF-serratus_M_contig837 112463..112667 +
1690964325.490052-UTR-F-serratus_M_contig837:112462..1126671690964325.490052-UTR-F-serratus_M_contig837:112462..112667Fucus serratus maleUTRF-serratus_M_contig837 112463..112667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932472.6597614-CDS-F-serratus_M_contig837:109514..1095541622932472.6597614-CDS-F-serratus_M_contig837:109514..109554Fucus serratus maleCDSF-serratus_M_contig837 109515..109554 +
1690964325.471621-CDS-F-serratus_M_contig837:109514..1095541690964325.471621-CDS-F-serratus_M_contig837:109514..109554Fucus serratus maleCDSF-serratus_M_contig837 109515..109554 +
1622932472.6802952-CDS-F-serratus_M_contig837:111929..1124621622932472.6802952-CDS-F-serratus_M_contig837:111929..112462Fucus serratus maleCDSF-serratus_M_contig837 111930..112462 +
1690964325.4802012-CDS-F-serratus_M_contig837:111929..1124621690964325.4802012-CDS-F-serratus_M_contig837:111929..112462Fucus serratus maleCDSF-serratus_M_contig837 111930..112462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig837.19746.1

>prot_F-serratus_M_contig837.19746.1 ID=prot_F-serratus_M_contig837.19746.1|Name=mRNA_F-serratus_M_contig837.19746.1|organism=Fucus serratus male|type=polypeptide|length=191bp
MADTSPQRKTTDKGPVELPPDFASQLKRHKEYKRRGPPSGRSNRCPDRPG
TTRTRLSSRFDAEAPATKLPRQTPLPPPSPPPPPPSRALNPSRHPSSPAA
LSRRPLKRRAIAISTTGSRRRQSENRGPRVLNSAANADPARNPAIAAPAR
PGSGGPAGSSRSKTETRTSRRAETRASRKAETRASRKKEA*
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mRNA from alignment at F-serratus_M_contig837:109193..112667+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig837.19746.1 ID=mRNA_F-serratus_M_contig837.19746.1|Name=mRNA_F-serratus_M_contig837.19746.1|organism=Fucus serratus male|type=mRNA|length=3475bp|location=Sequence derived from alignment at F-serratus_M_contig837:109193..112667+ (Fucus serratus male)
CAGGCACAACACTCGTGCATTGTCGCTCTGTGGTAGCCGACGTCCAAGTT
ATTGGCTCCCTCAACTCCCTTCTCGAGAGAGACGAGCGTGCGTTGTTTAG
ATCGGTGCAAAGCAACAGGTTTATCGGTTTCGTTTTGTTACACTTGATAT
CCGATTCCGCCGGCCTGCTCTGTTCTCAGGACACACGCATTGAGTAGAAC
GACGAGTACAACCGCTTGTTGAACCCAAACAAGAGCTGGTCGTTGGTTGA
ACGAAAGCTATTTGGTGGGTTCTCGGCGCCGCTGCTCTCTTCGACAGAGG
CGACGGAATGGCCTGCTGAGATATGGCTGACACTTCACCGCAGCGCAAGA
CCACAGACAAAGGTGAGAGACGAGCATGTTCTTTTTTTCTTGTCTACCCG
CGTCGGGGGACACAGTCAGACACGCAAAAAATGGATAAGGTGTTTGAAAA
AATATCGAGCGATCCAGATCATACTACTGATTGTACTACTGCTGTCTGTA
TCTGTGTATCATAGTTGCGCCTTGGACCCTTCCAGACTACAAACAAGGAC
AGTACTCCTGTACAGTGTACACACTTACCTACAGAAGAGCACATCCCAAC
CGACGTATGAATACGAGCACACTCTCTATTGCTACAAAGTAGTTTTACAT
ACGACCACTTACGTAAGAGCACGGGTTGAGTAGTTCTGGATACAGCACAG
AGTAGCGCTTGTTCAGCGCTGTACCCGACCTACGGCTTTACGTGACCTTC
TGCTGTTGCCCTGATGATGGTACCCATCTCTACCCCCGGTCAAGGGTACA
TACACATGGCGTACAGTTCGATTGTACTGGTTATTCACGGGGTCTTCGGT
TCGGGCCTTGCCCCTCAACTGCCATCACAGACAACAGTAGTACAGAGTAT
GTAAGTATATACCTATGTTGACTATGGCAATCACTTCTATAGCAGAGTAT
CATGGGTCAACCGGGTAAGGTCGCCAATCCTGCTCGCGGTCAACTGAACA
TGGAAAATGAACATTTCCCTTTCTCTGTTCGCGCCTGAGCACTTGCGTCT
CGCGTCAGCCTGCTCAGTTTCCACTCTCAGGCTGAATATGGTGCTCACTC
ACGGGATTCTTCCCGATTTCCGCGGGGGCGTCCATTTATTTGTACCGCCA
TCCGCCATCGGGTCTGTCCCGAGTTTTATCCAGGTCACGCAATTGCGTAC
CGATGTCGTTCACTGCCGAGAATCCGCTGACACAGGACCAGTAACCCTTT
AGTCATTTCCAAAAGCCGGTGCTGCCCTTTCAGATTTGTTTCACCATGGA
CCAATTTTTGTGCACCTCTCTTTCCCCACCCCCACTATTAATAGTAATAA
TAATAATGTTATAAAGTGGGGTATCGGAGGCCGTTATGTGTATAGCTCTA
CAGTAGTATAGTAGCGGTATGTGGTCTGGTCAGTACTTACAGGGCAGAAT
AACGATCAACCGGTTATGGTTGCCAACGCGCCTCGTGGTTAGCTGAACAG
AGAAAATGATTTTCCCCTGTTGCCGTGGTCATGCCGTCTCGTCCCGCGCC
AGCCCGCTCTGAATCTGGTGCTTACTCGCGGGATTCCTCCCGATTTCCGT
CCATCTTAACCGCTGACAAGATACGATATGCTATATTTAATACAAATTTA
ATATAAATATATGGACGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTA
AGCACCAGATTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCGGGACGG
GACTGCCCAAACCGTCTCGCGAGACCAAATTTTCAGGCACGAACGCGGAC
AGGGGAATTTTATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAAC
CTTACTAGGTTTATCCATACTCTTGCTATATGTGTGACCATACATACATA
CATACAACTACATACTGTCGCCGTTACTTTCAACATGGCCACTTCATACC
AATAGTGGGGGGTGTGGGAAAGAGAGGCGTATATTGATTGGTCCATGGTG
ACCTGCTAAGGCAGCACTCGTTCGGAACTACCTTGAGGTTTGCTGGCCCT
GTGCCGGCGGACTCTCGGCAGTGAACGCCATCGATACGCAATTGTGTGAC
CCGATAAGCTCGAAGCTTACCCGATGGTGTATGTCGGTTTAATATAAATA
TATGGACGTCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCAGA
TTCAGCCTGAGTATGGAGATGAGGGGCTGACGCGGGCCGGGACTGCCGAA
ACCGTCTCGCGAGACCAAATTCTCAGGCGCGAACGCGGACAGGGAAATAT
TCATTTCCCGTCTTCAGCTGACCACGTGCAGGATTGGCAACCTTACCCGG
TTGATCCATACTCTTGCAATATGTGTGCGACCATACATTCTGTACAGTCA
CTAGTACATCTCTCATCTACTCTAGTTATAACACGGAAATTCTTTTTGAT
TGAGGGCTGGTCGGTGCAGACAACGTACACGTTTTGACAATTTTTCCCCC
TGGCTGGGTGGATCCTCCGAAGGTTTAGTTTTTTTGTTTTTGTTTTGCAT
TCAGATTTTCTTTTTCAATTACTACAATATTCCACTCTACGGAGGGAGTG
CATTCCATGTACTCATGCCGCAGTGCCATAGCCCTACACCTGCCAGTCTA
GTGTAAGGCTTCGCTTTTCTAACTATTTAATTACAGTACAACTGTTCCAC
ACAACTATCTGCACGATGGTACTGATTGAAATCCCAGGCCCTGTTGAGCT
CCCGCCAGACTTTGCAAGTCAGCTGAAGAGACACAAGGAGTACAAGAGAC
GAGGCCCGCCATCGGGCAGGAGCAACCGTTGTCCGGACAGGCCGGGCACG
ACGCGTACCAGGCTCTCATCCCGCTTCGACGCCGAAGCGCCCGCTACTAA
GCTACCCCGCCAGACTCCTCTTCCGCCCCCATCCCCGCCTCCGCCTCCGC
CGTCTCGAGCCCTCAATCCATCGCGGCACCCGTCATCCCCCGCGGCACTC
TCTCGGAGACCGCTCAAGCGAAGGGCTATTGCTATTTCTACTACTGGAAG
CCGGCGCCGACAATCCGAAAATCGAGGACCCCGGGTATTGAACTCAGCGG
CGAACGCCGACCCGGCCAGGAACCCTGCGATTGCTGCGCCGGCGAGGCCG
GGGTCTGGCGGGCCGGCAGGGTCTAGCAGGTCGAAGACGGAGACGAGAAC
TAGTCGAAGGGCGGAGACGAGAGCTAGTCGAAAGGCGGAGACGAGAGCCA
GCCGCAAGAAGGAGGCTTAAAGCCTTTCGTTCCACCCAGGAACTGACTGC
ATTGGCATACATTATACTCTACGTGGCAAATCATTTCTGAGGGTTGTTTC
TGCTGCTACTGCACGGGCTTTGGGGCAGAGGGGGCACACAGCTGTGAGAA
GGGAAAGGGCAGACGACTTGAAGCGCATATTGGGCGTTGGTATTGTGGAC
TTCCAAGATATAGAATTGGCATCTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig837:109193..112667+

>mRNA_F-serratus_M_contig837.19746.1 ID=mRNA_F-serratus_M_contig837.19746.1|Name=mRNA_F-serratus_M_contig837.19746.1|organism=Fucus serratus male|type=CDS|length=1146bp|location=Sequence derived from alignment at F-serratus_M_contig837:109193..112667+ (Fucus serratus male)
ATGGCTGACACTTCACCGCAGCGCAAGACCACAGACAAAGATGGCTGACA
CTTCACCGCAGCGCAAGACCACAGACAAAGGCCCTGTTGAGCTCCCGCCA
GACTTTGCAAGTCAGCTGAAGAGACACAAGGAGTACAAGAGACGAGGCCC
GCCATCGGGCAGGAGCAACCGTTGTCCGGACAGGCCGGGCACGACGCGTA
CCAGGCTCTCATCCCGCTTCGACGCCGAAGCGCCCGCTACTAAGCTACCC
CGCCAGACTCCTCTTCCGCCCCCATCCCCGCCTCCGCCTCCGCCGTCTCG
AGCCCTCAATCCATCGCGGCACCCGTCATCCCCCGCGGCACTCTCTCGGA
GACCGCTCAAGCGAAGGGCTATTGCTATTTCTACTACTGGAAGCCGGCGC
CGACAATCCGAAAATCGAGGACCCCGGGTATTGAACTCAGCGGCGAACGC
CGACCCGGCCAGGAACCCTGCGATTGCTGCGCCGGCGAGGCCGGGGTCTG
GCGGGCCGGCAGGGTCTAGCAGGTCGAAGACGGAGACGAGAACTAGTCGA
AGGGCGGAGACGAGAGCTAGTCGAAAGGCGGAGACGAGAGCCAGCCGCAA
GAAGGAGGCTTAAGCCCTGTTGAGCTCCCGCCAGACTTTGCAAGTCAGCT
GAAGAGACACAAGGAGTACAAGAGACGAGGCCCGCCATCGGGCAGGAGCA
ACCGTTGTCCGGACAGGCCGGGCACGACGCGTACCAGGCTCTCATCCCGC
TTCGACGCCGAAGCGCCCGCTACTAAGCTACCCCGCCAGACTCCTCTTCC
GCCCCCATCCCCGCCTCCGCCTCCGCCGTCTCGAGCCCTCAATCCATCGC
GGCACCCGTCATCCCCCGCGGCACTCTCTCGGAGACCGCTCAAGCGAAGG
GCTATTGCTATTTCTACTACTGGAAGCCGGCGCCGACAATCCGAAAATCG
AGGACCCCGGGTATTGAACTCAGCGGCGAACGCCGACCCGGCCAGGAACC
CTGCGATTGCTGCGCCGGCGAGGCCGGGGTCTGGCGGGCCGGCAGGGTCT
AGCAGGTCGAAGACGGAGACGAGAACTAGTCGAAGGGCGGAGACGAGAGC
TAGTCGAAAGGCGGAGACGAGAGCCAGCCGCAAGAAGGAGGCTTAA
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