mRNA_F-serratus_M_contig836.19739.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: A0A0V0IXE8_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0IXE8_SOLCH) HSP 1 Score: 91.7 bits (226), Expect = 5.720e-19 Identity = 42/116 (36.21%), Postives = 69/116 (59.48%), Query Frame = 1
Query: 1 ALKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDY 348
A+K EI +N W V P++K +G + +K K DG++E++K R V + +G YHE SP+ S++RAV+S AA+KGW+ +DV +LQ D+ E +Y+ +P+ +
Sbjct: 460 AMKNEIQALEDNKTWEIVTLPQEKKAIGCRWVYKIKYKADGEVERFKARLVAKGYSQKEGLDYHETFSPVVRMSTVRAVISVAAIKGWKLYQMDVYNAFLQGDLYEEVYMNIPEGF 575
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: A0A2K3JS97_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JS97_TRIPR) HSP 1 Score: 87.0 bits (214), Expect = 1.570e-18 Identity = 45/132 (34.09%), Postives = 70/132 (53.03%), Query Frame = 1
Query: 1 ALKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDY-RAFSNAVGLLRKATY 393
A+ E++ N W+ V P K +G K +K K +G IE+YK R V Q ++G Y + SP+ +++R +LS AA+KGW +DV +L D+ E++Y+ LP Y S+ V L K+ Y
Sbjct: 79 AMATELHALAKNNTWSVVSLPPGKVPIGCKWVYKVKYHANGSIERYKARLVAQGYTQMEGVDYFDTFSPVAKLTTVRVLLSLAAIKGWHLEQLDVNNAFLHGDLHEDVYMVLPPGYPTTHSSQVCKLNKSLY 210
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE) HSP 1 Score: 85.9 bits (211), Expect = 2.140e-18 Identity = 47/139 (33.81%), Postives = 73/139 (52.52%), Query Frame = 1
Query: 1 ALKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDYRAF--------SNAVGLLRKATY 393
A+ E N N WT V+RP+ KTV+G++ F+ K+ DG +E+ K R V + + G HY+E + + SS+R V++ AA + E +D YL +I E IY+E+PK+ N V ++KA Y
Sbjct: 35 AMLEEYNSLEKNKTWTLVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALY 173
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: A0A2G2YGH0_CAPAN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A2G2YGH0_CAPAN) HSP 1 Score: 83.6 bits (205), Expect = 5.500e-18 Identity = 38/116 (32.76%), Postives = 64/116 (55.17%), Query Frame = 1
Query: 4 LKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDYR 351
+ E+ N W V+ PK K +G+K +K K +G++E++K R V + +G YHE SP+ ++R ++ AA +GW +DV +LQ D+ E +YIE+P+ +R
Sbjct: 1 MTSEVQALEANNTWVIVDLPKGKNTVGSKWIYKIKYLSNGEVERFKERLVAKGYSQQEGLDYHETFSPVAKMVTVRCTITLAASQGWNLYQMDVHNAFLQGDLEEEVYIEIPEGFR 116
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: A0A2P6Q6C4_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6Q6C4_ROSCH) HSP 1 Score: 88.6 bits (218), Expect = 7.140e-18 Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 1
Query: 1 ALKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDY-RAFSNAVGLLRKATY 393
A+ +EI N W+ V P DK +G K +K K DG +E+YK R V + V G Y E +P+ +++R +LS AA++GW +DV +L D+ E++Y++LP + R N V L K+ Y
Sbjct: 604 AMDKEIQALQENKTWSLVPLPPDKKPIGCKWVYKIKHNPDGTVERYKARLVAKGYSQVAGIDYRETFAPVAKLTTVRVLLSLAALQGWHLHQLDVNNAFLNGDLYEDVYMKLPPGFGRKGENRVCKLHKSVY 735
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: A0A6A3AWP1_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3AWP1_HIBSY) HSP 1 Score: 88.2 bits (217), Expect = 9.950e-18 Identity = 46/135 (34.07%), Postives = 67/135 (49.63%), Query Frame = 1
Query: 1 ALKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDYRAFSNA----VGLLRKATY 393
A+ E NNG WT V PKD+ V+G K F+ K DG + +YK R V + V G + + SP+ S+ VL+ A GWE RHID+ +L D+ E ++++ P + V L+KA Y
Sbjct: 1034 AVHEEYKALTNNGTWTLVRLPKDRMVVGCKWLFRVKRNPDGSVNRYKARLVAKGFSQVPGQDFKDTFSPVVRFSTFNTVLAVAVSNGWEIRHIDINNAFLNGDLSEEVFMQQPPGFEQEDECNRPLVCKLKKALY 1168
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: A0A1E1KFU7_9HELO (Uncharacterized protein n=1 Tax=Rhynchosporium commune TaxID=914237 RepID=A0A1E1KFU7_9HELO) HSP 1 Score: 87.8 bits (216), Expect = 1.290e-17 Identity = 42/116 (36.21%), Postives = 65/116 (56.03%), Query Frame = 1
Query: 1 ALKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDY 348
A++ E N + N W V PKD+ L TK F++K+G +G+I +YK R V + + ++GF + E S + A+S R + + A+ GW ID+ +L DI E IYI P+ Y
Sbjct: 301 AIEAEYNSLLQNRTWKVVRMPKDRKPLTTKWTFRKKLGGEGEITRYKARMVARGFQQIEGFDFTETYSNVVKAASYRILFAMTALYGWHCYQIDITTAFLNGDIDEEIYIRAPEGY 416
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: UPI001004D57F (LOW QUALITY PROTEIN: uncharacterized protein LOC107027889 n=1 Tax=Solanum pennellii TaxID=28526 RepID=UPI001004D57F) HSP 1 Score: 87.8 bits (216), Expect = 1.350e-17 Identity = 45/132 (34.09%), Postives = 73/132 (55.30%), Query Frame = 1
Query: 1 ALKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDYRA-FSNAVGLLRKATY 393
A+++EI N W+ V+ PK +G+K +K K DGQ+E++K R V + +G YH+ SP+ ++R V++ A KGW +DV +LQ D+ E +Y+E+P+ +R N V L K+ Y
Sbjct: 962 AMQQEIQALEENNTWSIVDLPKGMHTVGSKWIYKIKYKADGQVERFKARLVAKGYSQQEGLDYHDTFSPVAKMVTVRCVIALAVSKGWPMYQMDVYNAFLQGDLEEEVYMEMPEGFRKPGENKVCKLLKSLY 1093
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: A0A061FAW7_THECC (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 n=1 Tax=Theobroma cacao TaxID=3641 RepID=A0A061FAW7_THECC) HSP 1 Score: 83.6 bits (205), Expect = 1.870e-17 Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 1
Query: 4 LKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDY 348
+K +I NNG W+ + PK +G K +K K+ +EKYK R V + ++GF YHE SP+ +++R L+ A+KGW +D++ +L D+ E IY++LP Y
Sbjct: 1 MKSKIKALENNGTWSIISFPKYAHSIGCKWVYKVKLKAYRSLEKYKARLVAKGHSQLEGFDYHETFSPVAKQATVRTCLAHVAIKGWVLSQLDIDIAFLNGDLEETIYMDLPLSY 115
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: A0A151SYP7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SYP7_CAJCA) HSP 1 Score: 82.8 bits (203), Expect = 2.120e-17 Identity = 40/123 (32.52%), Postives = 64/123 (52.03%), Query Frame = 1
Query: 1 ALKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDYRAFSNAV 369
A+K+E N +NNG WT V P +KT +G K F+ K DG + KYK R V + G Y+E SP+ ++R +L+ A W + +DV +L ++ E +Y+ P + + A+
Sbjct: 40 AMKQEYNALLNNGTWTLVSLPPNKTAIGCKWVFRIKENLDGTVNKYKARLVAKGFHQQFGSDYNETFSPVVKPVTIRLILTLALTHHWSIQQLDVNNAFLNDNLQEEVYMSQPPGFESSDKAL 162 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig836.19739.1 >prot_F-serratus_M_contig836.19739.1 ID=prot_F-serratus_M_contig836.19739.1|Name=mRNA_F-serratus_M_contig836.19739.1|organism=Fucus serratus male|type=polypeptide|length=131bp ALKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFback to top mRNA from alignment at F-serratus_M_contig836:112679..113071+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig836.19739.1 ID=mRNA_F-serratus_M_contig836.19739.1|Name=mRNA_F-serratus_M_contig836.19739.1|organism=Fucus serratus male|type=mRNA|length=393bp|location=Sequence derived from alignment at F-serratus_M_contig836:112679..113071+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig836:112679..113071+ >mRNA_F-serratus_M_contig836.19739.1 ID=mRNA_F-serratus_M_contig836.19739.1|Name=mRNA_F-serratus_M_contig836.19739.1|organism=Fucus serratus male|type=CDS|length=786bp|location=Sequence derived from alignment at F-serratus_M_contig836:112679..113071+ (Fucus serratus male)back to top |