mRNA_F-serratus_M_contig834.19733.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig834.19733.1
Unique NamemRNA_F-serratus_M_contig834.19733.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig834.19733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig834contigF-serratus_M_contig834:293011..297014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932470.0077667-CDS-F-serratus_M_contig834:293010..2932011622932470.0077667-CDS-F-serratus_M_contig834:293010..293201Fucus serratus maleCDSF-serratus_M_contig834 293011..293201 +
1690964324.1749105-CDS-F-serratus_M_contig834:293010..2932011690964324.1749105-CDS-F-serratus_M_contig834:293010..293201Fucus serratus maleCDSF-serratus_M_contig834 293011..293201 +
1622932470.021123-CDS-F-serratus_M_contig834:296927..2970121622932470.021123-CDS-F-serratus_M_contig834:296927..297012Fucus serratus maleCDSF-serratus_M_contig834 296928..297012 +
1690964324.1840885-CDS-F-serratus_M_contig834:296927..2970121690964324.1840885-CDS-F-serratus_M_contig834:296927..297012Fucus serratus maleCDSF-serratus_M_contig834 296928..297012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig834.19733.1prot_F-serratus_M_contig834.19733.1Fucus serratus malepolypeptideF-serratus_M_contig834 293011..297012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig834.19733.1

>prot_F-serratus_M_contig834.19733.1 ID=prot_F-serratus_M_contig834.19733.1|Name=mRNA_F-serratus_M_contig834.19733.1|organism=Fucus serratus male|type=polypeptide|length=92bp
RTTSSERTNYLGGINQPRTAISSEYEEDQGGGRVVGNTVGSSFAAMFAAP
SAFLRKACRKRNDRTSTVATVPDNKQRNDELGGLNQQITAAS
back to top

mRNA from alignment at F-serratus_M_contig834:293011..297014+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig834.19733.1 ID=mRNA_F-serratus_M_contig834.19733.1|Name=mRNA_F-serratus_M_contig834.19733.1|organism=Fucus serratus male|type=mRNA|length=4004bp|location=Sequence derived from alignment at F-serratus_M_contig834:293011..297014+ (Fucus serratus male)
CGGACAACAAGCAGCGAAAGGACGAACTATTTAGGAGGAATCAACCAACC
AAGAACAGCAATATCATCGGAATACGAGGAGGATCAAGGAGGTGGCCGCG
TGGTCGGGAACACCGTCGGATCCAGCTTCGCCGCCATGTTCGCCGCACCA
TCCGCGTTCCTGCGCAAAGCATGCCGCAAGAGGAACGATAGGTATGTGCG
CACAGTCACCGATGATTCAAGGGGCAACCGTTATTTATCTACTGTCTAGA
CGGTGTGCCCTGCCAGACCTTTTTCTTATTTTTGTTCTCTTTTTGCTGTT
CACAACAAACCAAGAGCGGGATTGGCCACCGTATGGGACGGCGCGTTCTG
ATTTTTAGATGGTAATTTTAGTTGTAGCTGTATGGTACAGAAATATTTAC
GGTATTTAATACTGCAATACATTGAGCAAGTACAAAACTAGTACCTGTAC
ATGAGTCGAAAACATGCACCAGTTGTTGTTGTTGTTGTTGTTGATGATTC
ACACATCATTCAGCGTATTTTTTAAAAGAAAATACAGATCGTACCTAGAC
CTTCTGAGCACCCCCCAGTATTGTCCTTGCAACTGAAGAAACTACTGTGG
CACAACAAGTCAGTCATAGTCCTGTCAAATGCTAATCCCGCTTGTGGTCT
CAAAGAGGTACACAGGTCAACGGGCCACATCATGGTGGCAACCCGCTACT
CAGACCAACAGGGATCCAAATCGCGGCAAAAGTTAAACGACTCTACAAGC
AATGGCACCGACCAATATCAAAACGATTCATCAAACATCCTTACTCCATA
TCGAGAGCAACCTCGATCGACTCGGATTGTTATCGCCTACCCACGACCAG
CGTTCTCAGCAAAAACCCGGAAGAATTACGCTCCAATAGTTTTGATCAAC
AAAAAGTCCAAGTTTCTCAAGGCCACAGAATCGTACAGAAATAAGGAAAT
TGAAATAGCGAGGTCCATGGTGGTGGAGGCCTTGAGCTGGTGAAGTCGGC
GCGCGAGCCAGTATCCAGCCGTCCGAAGCCCTGCGCATCCCTGAAAAAGC
CCCACGAATCTTGCCCGCTCGCCGCTCCTTGTGGCCCTCGTAGAAAGAAA
AACGGCAATGGCCAAAAACGGGAGCTCCCGGTGCTTTTTAGGCCAACAAC
GGGAGTACCTGAAAACAATAGCGACAGAGAGTGTTGTTGGCCGTATCTGA
TTGGCTAACACCCACTTTGTCCCGTTTTTGGCCATAAGCGACCGGGTACT
CCCGGTAATAGCTACTTTGCTCAGCTTCCACCCGTTTTTGGCCATTTTGT
GTTCATTTCCgGGGGACTACTCGACCACTCGAACAGATAAACATGGACCA
CAAGAACAATTAACAGCAAAATTTCAACCAGGTGACGTGGAAATTGGCCA
ACATTTCTCCTTGTTATTTGCTCAAGAATAAGGCGGAAGGGATGAAACGC
AGGTGGCAAATTTGGTGGAGATACTTGCGCGAGCCTCGGCGGGAGACAGC
ATTCAGAAGGTGTACGGGCAAAAGTGGCGGGCCTGGTGCTACGCACGAGC
TGCACAAGAAAAAAGACCATGGTTGCTTAAAACGGATGGGGCGGAGGCGG
CCGTAGTTGCTTTTACAGAATTCCTGGCGTTACGGTGTTTTACTTTCAAG
AATTCAAAGCACAACCATGATATCCGAGATTACTTGTCAGCAATTACGTG
CTGTCATAAGATGTTTAGGGGTTGGGAATTGCCCAAGGACCACCACAACA
TCGTATACGTCAGAGCAGGCGGAGAAAAGGGACAGAACTCGTTTCTCAAG
CGGTAATGCAACATACGGTAAGCAGGATAGAGAAAAGATGGATACAGTGT
GAAAAACAAGTCGGGCTTGCCCAATGGAGTAAGTAAGTGGAGGGACCAGT
TTCCGTTTTACCGGGAGTTGTGCCAAAAGCAAAAACCACCGCTTGAGAAA
CGAATTCTGTCCCTTTTCTCCGCCTGCTCTGACGTATACGATGTGGTCGT
CCTTCCCCAAACATCTTATGACAGTACTTAATTGCTGACAAGTAACCTCG
GATGGCTGTGCTTTGAATTCTTGAAAGTGAAACACCGTAACGCCAGGAAT
TCTGTAAAAGCAACTACGGCCGCCTCCGCCCCATCCGTTTTAAGCAACCA
TGGTCTTTTTTCTTGTGCAGCTCATGCGTAGCACCAGGCCCGCCACTTTT
GCCCGTACACCTTCTGAATGATGTCTCCCGCCGAGGCTCGCGCAAGTATC
TCCACCAAATTTGCCACCTGCGTTTCATCCCTTCCGCCTTATTTTTGAGT
AAATAACAATGTGACCACGGGCTGGGTTTTTTGACATCAGGCTTATGGTC
AAATTCCACGTCATCTGGTCGAAATTTTGCTGTTAATTGTTCTTGTGGTC
TGATATTTATCTGTTCGAGTGGTCGAGTATGCCCCCGGAAAGGAACACAA
AATTGCCAGAAACGGGTGGAAGCTGAGCAAAGTAGCTATTGCAGGGAGTA
CCCGGTCGCTTATGGCCAAAAACGGGAGAAAGTGGGTGTTAGCCAATCAG
ATACGGCCAACAACACTCTCTGTCGCTATTGTTTTCAGGTACTCCCGTTT
TTGGCCTAAAAAGCACCGGGAGCTCCCGTTTTTGGCCATTATTGCCCAAA
GAAAAATGACCGTGGTCAGATGTCAGCTTTTCCTCAGAAACCTCCCGGTT
CAAGCCTGCACATGTGATTCTCGCGCACAGGGGTTCAGCCCTCCCCTGGC
TCGTTGACGATCGAGCTGCCCTCCGCCTTCGCCGAATCTGGTGCGTACCC
ACCCGATAGAGCACTACCAGGCTCTCCGCGAAAGTGCTCCCTGCCTCTCG
AGTGCCGCCACCCTCCCGAAGGCCACCAAATTGGGGCTCGGAAGAGGCGC
ACACCTGGGAGCACCATCATCTTCAGCCAACCAGGCTGAATCGCGAAGAA
GGCAGCCAGTTGGCTGCACCTCTTGAGGGTGAGTCCGGCTCTACACCCGC
CGGAAAGACCCTCCCACACTCATACCCCGAAAACAGGTTTCGGAGGGAGA
GGGTATGGAGTACATACAGACAGACAGACAGCACAGTACATATTATTAAG
TTTTTTTGTCTTTTATTTTTTGCGAATAAAATGAACTTATGTAAACCTTC
TTATCAATATCAATATAATAGCATCCGCCCAGTCAGGGAGGGGGATCGTC
AAACGTTTGGGTGGGACATTGGCTGCAAGCACAATAATTATTCATGGCTT
GAATCGGCTAATATTCCCCAATGGTAGTATTAATTACTAATAGCGTAGAG
TCAACACTATAATGTACTCCGGTATGTAGGTAAACATTATATCCACCCTC
GAGGGGGGAAATTAGGATACCCCTAGGCCCTTTTTTGCAATCGTAATTAA
AAACTGAATTTGCTGATTACCTTAGAGGCCGTCTAAACTTCTTGATAATT
CCCTCCCCTGATCGGATAGATGCTAAGAAGATTTAGATTTTTTTATATAT
ATATATTTTTTTTAAATCACACTTACAGCCGATGGACCACTAATTACCAT
CCTGCCTGTGGTCACAAAGGATCCTCCCATCTCTCCCCGGTCCACGCCTT
GCAATTTTTATCCCGATGCAAGTTCAGCACTCTTACAACTCGTCAACCAA
TGGTTGAATTTTACTTACTCACGTTCCCACGCTTTCCGGTAGGAAAGAAC
GAACACAAATTCTGCTTAAGCTAAGAATCGAACTCACGACTTCCGCACTA
CTAGCAGGTACGCAGGTTACCTACTAAACCACTCGGGCAACTAATATAAT
ACGCAGATAGATGTTAATTTCTCTAGATTTTCGAGTGACGACAGAGTATT
CCAATTGTTGATGATGCTGAGCTGGTAAATATCGCACCCCAACCCCCACT
ATTCACTATTTATTCAGAACTTCAACTGTTGCAACAGTTCCGGACAACAA
GCAACGAAACGACGAACTAGGAGGACTCAACCAACAAATAACAGCAGCAT
CATC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig834:293011..297014+

>mRNA_F-serratus_M_contig834.19733.1 ID=mRNA_F-serratus_M_contig834.19733.1|Name=mRNA_F-serratus_M_contig834.19733.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig834:293011..297014+ (Fucus serratus male)
CGGACAACAAGCAGCGAAAGGACGAACTATTTAGGAGGAATCAACCAACC
AAGAACAGCAATATCATCGGAATACGAGGAGGATCAAGGAGGTGGCCGCG
TGGTCGGGAACACCGTCGGATCCAGCTTCGCCGCCATGTTCGCCGCACCA
TCCGCGTTCCTGCGCAAAGCATGCCGCAAGAGGAACGATAGCGGACAACA
AGCAGCGAAAGGACGAACTATTTAGGAGGAATCAACCAACCAAGAACAGC
AATATCATCGGAATACGAGGAGGATCAAGGAGGTGGCCGCGTGGTCGGGA
ACACCGTCGGATCCAGCTTCGCCGCCATGTTCGCCGCACCATCCGCGTTC
CTGCGCAAAGCATGCCGCAAGAGGAACGATAGAACTTCAACTGTTGCAAC
AGTTCCGGACAACAAGCAACGAAACGACGAACTAGGAGGACTCAACCAAC
AAATAACAGCAGCATCAAACTTCAACTGTTGCAACAGTTCCGGACAACAA
GCAACGAAACGACGAACTAGGAGGACTCAACCAACAAATAACAGCAGCAT
CA
back to top