mRNA_F-serratus_M_contig833.19728.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig833.19728.1
Unique NamemRNA_F-serratus_M_contig833.19728.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig833.19728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig833contigF-serratus_M_contig833:355699..359511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size899
Cds size897
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932468.1516137-CDS-F-serratus_M_contig833:355698..3558121622932468.1516137-CDS-F-serratus_M_contig833:355698..355812Fucus serratus maleCDSF-serratus_M_contig833 355699..355812 +
1690964323.2994025-CDS-F-serratus_M_contig833:355698..3558121690964323.2994025-CDS-F-serratus_M_contig833:355698..355812Fucus serratus maleCDSF-serratus_M_contig833 355699..355812 +
1622932468.1734164-CDS-F-serratus_M_contig833:358728..3595111622932468.1734164-CDS-F-serratus_M_contig833:358728..359511Fucus serratus maleCDSF-serratus_M_contig833 358729..359511 +
1690964323.3117476-CDS-F-serratus_M_contig833:358728..3595111690964323.3117476-CDS-F-serratus_M_contig833:358728..359511Fucus serratus maleCDSF-serratus_M_contig833 358729..359511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig833.19728.1prot_F-serratus_M_contig833.19728.1Fucus serratus malepolypeptideF-serratus_M_contig833 355699..359511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig833.19728.1

>prot_F-serratus_M_contig833.19728.1 ID=prot_F-serratus_M_contig833.19728.1|Name=mRNA_F-serratus_M_contig833.19728.1|organism=Fucus serratus male|type=polypeptide|length=299bp
MQRRGEGGGGDGDSLGREGEGEERALAATAAIETLQKQVEALKQELAMVG
VRQLALAAGAAPGVLGGARKDADHWGASSFGATSQKEFQRSEKASTRRKG
VCDEKDARRRPVVLQVREGVKGGARCYSDGSGSDSGDNSSSRAFRDGDRI
DDNTRGGWERSDHGEVDRRGSKGLAAGVRSLSGSVSGWRATTHLEEEEEE
EDERRERSLSRGISTATARRPRTWFETASDDLRDGRSGSDSDRGLQNLGR
RRSKGVVNALTTTPGIKGEQQEPRHCGVHRSASARRRKTGVVQDELDEE
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mRNA from alignment at F-serratus_M_contig833:355699..359511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig833.19728.1 ID=mRNA_F-serratus_M_contig833.19728.1|Name=mRNA_F-serratus_M_contig833.19728.1|organism=Fucus serratus male|type=mRNA|length=3813bp|location=Sequence derived from alignment at F-serratus_M_contig833:355699..359511+ (Fucus serratus male)
ATGCAACGCCGAGGTGAAGGTGGAGGTGGCGATGGTGATAGTTTGGGGCG
CGAGGGCGAGGGAGAGGAGAGGGCGCTAGCAGCGACGGCGGCAATTGAGA
CTCTTCAAAAGCAGGTAAGGGATGAACGAAATGATTAGTAAACTGCTGTA
TACCCTTGTGAGTGTTTGGTTTTCTAGTGTATCGAGGGAATGTAGGGCAA
GTAAAGGGTGGGGGTATTGTACGTACCTCTTATTTCTCTCCAAGACAAGA
AGGGTTATGCTGCTGACTAATGGTGATTGTTGTGATAAAATTTATTGGGG
AAAGTTATGATCTCTACTGTTACAGTAGTCCTGTATTTATTGCCCTGGTA
CCTCTTATGTTGCCTGCGTTACCCTCGCCCTGAAGGGGCAAGCGCGCGTT
GATGACAGCGGTCCAATCGGGCCCAAACATGGCCCAGCTTTTGTTTGAAC
AAGTTATCAATAACTCGTCTTTATGGCTTGTGTATTTATATGTATGTATG
AATGTATGCATGTATGTATGCATGTATGTATGTATGCATGTATGTATGGG
TGTATGTATGCATATATGTATGAATGTATGTATATATGCATGTATGCATG
TATGTATGTAAGTATGTATATTGTATATATGTATGCATGTATGTAGCTCA
GAGGTACCTCGTAACCCTCTGACACGTTGGGACATGAGTCCGATCCCGGC
AAACGGGATTTTTCTCACTAAAAACAAAAAAGCTAAAATAAAAATGCCCA
ACGGGTGGAGAACGATTAATTCGTTAGTACACAAAATTCGACTTCATGGT
CGACGAGGGAAAGGAATGGCTGAATCCTTCTCGCGATAAAAATTAAGGCA
CGCACCGCAAGAGGAAGGTGGATGAGAAATCCTGTGTGACCTTCCTCCTG
TGTGACCCCGGCTGGTACGTCCATTCATGTCCAGAATGAATGGGAAGAAA
ACACACAGAAAACACACGTGTATGTATGGATATATAGAGCTAGGTGTATG
GTCATCATATATGATGGTAGAGTATGGGTCAACCGGGTAAGGTTGACAAT
CCTGCCCGTGGTCAGCTGAACAGGGGAAACGAATATTTCCCTGTCCGTCC
CCGTTCGCGCCTGGGAATTTGGTCTCGCGAGACGGCTTCAGCCGTCCCGT
CCCGCGCCAGCCAGCTCGTCTCCATACTCAGGCTGAATTTAGTGCTTACT
CTTGGGATCCCTCCCGATTTCCGCGGCGGCGTCCATTTATATATATCGCC
ATACGCCATCGGCTCAGTCCCGAGTTTATCGGGTCACGCATTTGCGTACC
GACGGCGTTCATTGCCGAGAGTCCGCCGGCACAGGGCCAGTAGCTCTCAG
GTTAATTCAAGTAGCGGGTGCTGCCTTTTCAGGTATAATCATGGACTATG
ACCAATTGATGTGCGCCTCTCTTTACCCACACCCACTATTGGTAGGAAGT
GGGCATGTTTATACTCTTATTAACTATACTCAATGTAGGGTCGAATGAGT
GGGGTCTCCAATAGTTTCGAGGCCAATTGAGATGGGGACGGGGATCATGC
CGGAGGGGGGGGGTATTTTGTTTTTCGGGAGAGGGGAGAGGGGATACAGG
CACGGTACGAATACGGCCGTAAGGGGATTGTGATGCGTTGACCGCCGGGC
GAAGCTAGGCTAGTTCGTGAAATCCATCGCACCTTTAATCTAACGCTTCT
CCATGGGAAAAGGCGTGGGCCGTCACTTCCTCAACGACCGACCGAACACA
AACACACACACTCACATATACCCACACACCTGTCGCGCTTGATCAGAGGT
CTTATCACTGTTGCCCCCTCTCCGTTGGGAGGATCAATGCGAGTGTTAAT
ATCAATGATATATAATGACTATACAATCTCACATTTATTGATTCGTTACG
AATCCTGCCGTGGTGACGAGATAGACGGAACCAAACCAAATCAAACCGGG
AACAGGTTCGGAGATAAGCAGGGAAAGGAAAGCAGACAGAAGAGAACGGA
CAGGAAAGCAAGTAGCCAGCAAAAGACATCGTCGCGATCAACAAGAAACA
GAAAACTCAAACAAAATCACAAACAGAAGAAACAAACTAAAGGCAACCAC
ATAAAACAAACGCTCCTCAGCAGGCTACGCAAGAGAGGTAGCCCTATAAG
TGGTGGAATACAATGCGGGCATGAAGGCAAGGGTAACGTCAACGGATGCG
ACACACAGCGAAATAAAAGCACGGAATGAGGAAAATGAGACAATTATCAA
ATGAAATATATAGATAATAATGAGGTATACAGACATAAGAAGCATCGCGA
TGGCATGGGTTAACTGCCCAAAAATGAAAGAGGAGCAGAACCCATACCGG
ACTCTCCTATATCGCAGGAGGAAGACAAATGAAAACAAAACGCCAAAATA
ACACAAAATCGCACACACACGTTGTTTATCTCACATTATTAACTGGTCGC
TACAAATCCAGCTGTGATCACAAGATAGAGGAAGTTACACCAATACAAAC
CGGGAACGAACACGGTCGGAGAAGGACAAAACAAAACAAACAATCAGGGA
AGAAAGAGATCAGACAGAAGGAAGCGGGCGTGAAAGTAGCTTGCAAAGGA
CATCGTCGCCAGCAAGGGATTTAGGAGGCGAAACCAAGACATGAAAAGCG
AAATTAACAAAGGACAACCACATATTATTCGTGGAGGGCAAGAAAGGCAA
TCATCTAAGCAGTGCAAGAGAACCCAGATAGGAAGACAAGGACAAGGCCA
ACGAGTGCGCCACATAGCGAAAACATAAAAATGAAGGAGGAGGGAAAGGG
AGACAACAATCAAATCAAGTACAGGAATGCAGTTCCAAAATACTCCAGAT
GCCTGAGATATAATTTAATGCTGTTCCTTTTAAGTTTTGCGCAAGATCCT
CGAGGTATGCCGTTGCAGATAGCTTCCTCCGCATAGGGTCTGACCCCAGC
GTGCGCGCGCGCCTAACCCCCACCCCCTCCCATCCCCGCTCCTCCCCCGC
TCCTCCCCCTTCCGGATCCCGCCCCGACAGGTGGAAGCGCTAAAGCAAGA
GCTGGCGATGGTCGGGGTGCGTCAGCTTGCTCTCGCGGCAGGGGCAGCCC
CCGGCGTGTTGGGAGGGGCGAGGAAGGATGCCGACCACTGGGGTGCATCC
TCATTCGGAGCGACCTCTCAAAAGGAGTTCCAACGATCAGAGAAGGCGTC
GACGCGGCGGAAGGGGGTCTGCGACGAGAAAGATGCGAGACGAAGGCCAG
TCGTACTTCAAGTGCGAGAGGGTGTGAAGGGAGGTGCCAGGTGTTACAGC
GACGGCAGCGGCAGTGACAGCGGCGATAACAGCAGCAGCAGAGCGTTTCG
GGATGGAGACAGGATCGATGATAATACGCGCGGGGGGTGGGAACGCAGCG
ACCACGGCGAGGTGGATCGACGCGGTTCGAAGGGGTTGGCCGCGGGTGTC
CGCTCGCTCTCCGGCTCCGTCTCCGGCTGGAGAGCAACGACGCACCTCGA
GGAGGAGGAGGAGGAGGAGGACGAGCGAAGAGAGCGATCGCTGAGCCGTG
GCATATCGACTGCGACCGCCCGGCGGCCTCGCACATGGTTCGAGACGGCA
TCGGACGATCTTCGTGACGGCAGAAGCGGCAGTGATAGTGACAGGGGTTT
GCAGAACTTGGGTCGGCGGCGTTCTAAAGGGGTGGTTAACGCGCTCACGA
CGACTCCGGGCATCAAGGGAGAGCAGCAGGAGCCGCGGCATTGCGGGGTC
CACCGCAGTGCGAGCGCCCGCCGCCGGAAAACAGGTGTGGTTCAAGACGA
ACTCGATGAGGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig833:355699..359511+

>mRNA_F-serratus_M_contig833.19728.1 ID=mRNA_F-serratus_M_contig833.19728.1|Name=mRNA_F-serratus_M_contig833.19728.1|organism=Fucus serratus male|type=CDS|length=1794bp|location=Sequence derived from alignment at F-serratus_M_contig833:355699..359511+ (Fucus serratus male)
ATGCAACGCCGAGGTGAAGGTGGAGGTGGCGATGGTGATAGTTTGGGGCG
CGAGGGCGAGGGAGAGGAGAGGGCGCTAGCAGCGACGGCGGCAATTGAGA
CTCTTCAAAAGCAGATGCAACGCCGAGGTGAAGGTGGAGGTGGCGATGGT
GATAGTTTGGGGCGCGAGGGCGAGGGAGAGGAGAGGGCGCTAGCAGCGAC
GGCGGCAATTGAGACTCTTCAAAAGCAGGTGGAAGCGCTAAAGCAAGAGC
TGGCGATGGTCGGGGTGCGTCAGCTTGCTCTCGCGGCAGGGGCAGCCCCC
GGCGTGTTGGGAGGGGCGAGGAAGGATGCCGACCACTGGGGTGCATCCTC
ATTCGGAGCGACCTCTCAAAAGGAGTTCCAACGATCAGAGAAGGCGTCGA
CGCGGCGGAAGGGGGTCTGCGACGAGAAAGATGCGAGACGAAGGCCAGTC
GTACTTCAAGTGCGAGAGGGTGTGAAGGGAGGTGCCAGGTGTTACAGCGA
CGGCAGCGGCAGTGACAGCGGCGATAACAGCAGCAGCAGAGCGTTTCGGG
ATGGAGACAGGATCGATGATAATACGCGCGGGGGGTGGGAACGCAGCGAC
CACGGCGAGGTGGATCGACGCGGTTCGAAGGGGTTGGCCGCGGGTGTCCG
CTCGCTCTCCGGCTCCGTCTCCGGCTGGAGAGCAACGACGCACCTCGAGG
AGGAGGAGGAGGAGGAGGACGAGCGAAGAGAGCGATCGCTGAGCCGTGGC
ATATCGACTGCGACCGCCCGGCGGCCTCGCACATGGTTCGAGACGGCATC
GGACGATCTTCGTGACGGCAGAAGCGGCAGTGATAGTGACAGGGGTTTGC
AGAACTTGGGTCGGCGGCGTTCTAAAGGGGTGGTTAACGCGCTCACGACG
ACTCCGGGCATCAAGGGAGAGCAGCAGGAGCCGCGGCATTGCGGGGTCCA
CCGCAGTGCGAGCGCCCGCCGCCGGAAAACAGGTGTGGTTCAAGACGAAC
TCGATGAGGAGGTGGAAGCGCTAAAGCAAGAGCTGGCGATGGTCGGGGTG
CGTCAGCTTGCTCTCGCGGCAGGGGCAGCCCCCGGCGTGTTGGGAGGGGC
GAGGAAGGATGCCGACCACTGGGGTGCATCCTCATTCGGAGCGACCTCTC
AAAAGGAGTTCCAACGATCAGAGAAGGCGTCGACGCGGCGGAAGGGGGTC
TGCGACGAGAAAGATGCGAGACGAAGGCCAGTCGTACTTCAAGTGCGAGA
GGGTGTGAAGGGAGGTGCCAGGTGTTACAGCGACGGCAGCGGCAGTGACA
GCGGCGATAACAGCAGCAGCAGAGCGTTTCGGGATGGAGACAGGATCGAT
GATAATACGCGCGGGGGGTGGGAACGCAGCGACCACGGCGAGGTGGATCG
ACGCGGTTCGAAGGGGTTGGCCGCGGGTGTCCGCTCGCTCTCCGGCTCCG
TCTCCGGCTGGAGAGCAACGACGCACCTCGAGGAGGAGGAGGAGGAGGAG
GACGAGCGAAGAGAGCGATCGCTGAGCCGTGGCATATCGACTGCGACCGC
CCGGCGGCCTCGCACATGGTTCGAGACGGCATCGGACGATCTTCGTGACG
GCAGAAGCGGCAGTGATAGTGACAGGGGTTTGCAGAACTTGGGTCGGCGG
CGTTCTAAAGGGGTGGTTAACGCGCTCACGACGACTCCGGGCATCAAGGG
AGAGCAGCAGGAGCCGCGGCATTGCGGGGTCCACCGCAGTGCGAGCGCCC
GCCGCCGGAAAACAGGTGTGGTTCAAGACGAACTCGATGAGGAG
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