mRNA_F-serratus_M_contig833.19723.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig833.19723.1
Unique NamemRNA_F-serratus_M_contig833.19723.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig833.19723.1 vs. uniprot
Match: A0A6H5K3S5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3S5_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.450e-47
Identity = 81/110 (73.64%), Postives = 88/110 (80.00%), Query Frame = 3 
Query:  693 LWPHYTPLYTNMKVLRRKRLDASMVYYRAGPGTKACFLLSVWGVFFLTWLGVMLALGSPFIIPKDSPEEKLALSRPVFGGAAMYLVCAFLAGFSWYKSSCGAGRLPTMGE 1022
            LWP YTPLYTNMKVLRRKRLDASM+Y RAGP TK CFL S+WG  FLTWLG  LA GSP+IIP+D P   LA SR VFG AAMYLVCA L G+SWYKSS GA  LPT+G+
Sbjct:   88 LWPPYTPLYTNMKVLRRKRLDASMMYSRAGPCTKICFLTSLWGASFLTWLGFTLASGSPYIIPEDPPATNLARSRSVFGAAAMYLVCACLTGYSWYKSSWGARPLPTLGD 197
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig833.19723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K3S5_9PHAE1.450e-4773.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig833contigF-serratus_M_contig833:172041..176841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_002760.1
Exons3
Model size1228
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig833.19723.1prot_F-serratus_M_contig833.19723.1Fucus serratus malepolypeptideF-serratus_M_contig833 175404..176656 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932469.4161258-UTR-F-serratus_M_contig833:172040..1721541622932469.4161258-UTR-F-serratus_M_contig833:172040..172154Fucus serratus maleUTRF-serratus_M_contig833 172041..172154 +
1690964323.8233862-UTR-F-serratus_M_contig833:172040..1721541690964323.8233862-UTR-F-serratus_M_contig833:172040..172154Fucus serratus maleUTRF-serratus_M_contig833 172041..172154 +
1622932469.4324691-UTR-F-serratus_M_contig833:175044..1754031622932469.4324691-UTR-F-serratus_M_contig833:175044..175403Fucus serratus maleUTRF-serratus_M_contig833 175045..175403 +
1690964323.8361044-UTR-F-serratus_M_contig833:175044..1754031690964323.8361044-UTR-F-serratus_M_contig833:175044..175403Fucus serratus maleUTRF-serratus_M_contig833 175045..175403 +
1622932469.489344-UTR-F-serratus_M_contig833:176656..1768411622932469.489344-UTR-F-serratus_M_contig833:176656..176841Fucus serratus maleUTRF-serratus_M_contig833 176657..176841 +
1690964323.868744-UTR-F-serratus_M_contig833:176656..1768411690964323.868744-UTR-F-serratus_M_contig833:176656..176841Fucus serratus maleUTRF-serratus_M_contig833 176657..176841 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932469.4548535-CDS-F-serratus_M_contig833:175403..1757161622932469.4548535-CDS-F-serratus_M_contig833:175403..175716Fucus serratus maleCDSF-serratus_M_contig833 175404..175716 +
1690964323.8482301-CDS-F-serratus_M_contig833:175403..1757161690964323.8482301-CDS-F-serratus_M_contig833:175403..175716Fucus serratus maleCDSF-serratus_M_contig833 175404..175716 +
1622932469.4753275-CDS-F-serratus_M_contig833:176399..1766561622932469.4753275-CDS-F-serratus_M_contig833:176399..176656Fucus serratus maleCDSF-serratus_M_contig833 176400..176656 +
1690964323.8587077-CDS-F-serratus_M_contig833:176399..1766561690964323.8587077-CDS-F-serratus_M_contig833:176399..176656Fucus serratus maleCDSF-serratus_M_contig833 176400..176656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig833.19723.1

>prot_F-serratus_M_contig833.19723.1 ID=prot_F-serratus_M_contig833.19723.1|Name=mRNA_F-serratus_M_contig833.19723.1|organism=Fucus serratus male|type=polypeptide|length=190bp
MRPMKVLRQRMSTSVGDAQGYTSIQLSDVDEGDGDEKEYWASGDEQGVGR
RRRRRSGAARAEEGRRLGDRESDLWPHYTPLYTNMKVLRRKRLDASMVYY
RAGPGTKACFLLSVWGVFFLTWLGVMLALGSPFIIPKDSPEEKLALSRPV
FGGAAMYLVCAFLAGFSWYKSSCGAGRLPTMGEGSFENR*
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mRNA from alignment at F-serratus_M_contig833:172041..176841+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig833.19723.1 ID=mRNA_F-serratus_M_contig833.19723.1|Name=mRNA_F-serratus_M_contig833.19723.1|organism=Fucus serratus male|type=mRNA|length=4801bp|location=Sequence derived from alignment at F-serratus_M_contig833:172041..176841+ (Fucus serratus male)
TCTAGGACCGTTTTTAACCCTGACGCTTAATTGTGAGCCCGACGAACCCC
AGTTTTGGATCAAAACCTCGCCTTCTCCCGGGAACCTAGAGTGACGGAGT
TTATTTGGACCGTGGTGAGTCTTACGATCCCCTGAGGTGCTAAATCTGCA
CACCCATCGAGTACATAACCATTTGATCGGATTTATTCTTCGTTTATGTA
CGGCCTTCCTTATACCTCCGTGGCCTGCGGGTATGCAAGGTAGTTGAAGC
CCTCTCGGGCATCATTCTCGGCCTAAGCCACTTTCGACTCGACGAGTGAA
GAAGTGTTTGCACATGCCCACGTTAGGAGGCTCTCCTTTCGTTCTCTGTG
CTCAAGCTACCAAATACCATTGATCGGGCGGAGAAAATACGAGATGTTCT
TGTAAAAACAACGTACACCGTGTCTTACCCATCATCACGCACCTCGAAAT
ATGTACCGGTATGTTGTATGTAAAGCCACACACATAGCAAGAGTATGGAT
CAGCCGGGTAAGGTTGCCAATCCTGCTCGTGGTCAGCTGAACAGGGAAAA
TAATATTCCCCTGTCCGCGTTCGTGCCTGAGAATTTGAGACGGTGTTGGC
AGTCCCGTCCCCCGTCAGCCTGCTCATCTCCATACTCAGACTGAATCTGG
TGCTTACTCACGGGATTCCTCCCGATTTCTGCGGCGGCGTCCATTTTATT
TATACCATCAGACGCCATCGGGTCAATCCCGCGTTTATCAGGTCACGCAA
TTGCGTACCGATGGCGTTCACTACCGAGAGTCCGCCGGCACAGGGCCAGT
AAATCTCAAGGTAGTTCCGAACGAGTGCTGCCTTAGCAGGTCACCATGGA
CCAATTAATGTACGCATCTCCTTTCCACAACCACTGTTGGTATGAAATGG
GCATGTTGAAAGTACCGGCGTTGTACGGTCGTCACAAAATATGCATGGTC
GTCACGTATAGCAAGGGTAAGGATCAACCGGGTAAAGTTGCCAATCCTGC
TCGTGGTCAGCTCAACAGGGAAAATGAATATTCCCCTGTCCCCGTTCGCG
CCTGAAAATTTGGTCTCGCGAGGCGGGCTCGGCTTCCCCGTCCCGCGTCA
GCCTGCTCATTCTCCACACTCGTTAACAGGCTAGGTCTAATTCCGGAGAA
ATAATACCTAGTAAAAAACAAGGACATTAAACCGTAGTGGAATCAACTAT
ATATGGGACTGCCGAACCCGTCTCGCGAGACCAAATTCTCAGGCACCAAC
GCGGACAAAGGAAATATTCATTTTTCCTGTTCAACTGACCACGGGCAGGA
CTGGCAACCTTACCCGGTTGATCCATACCCTTGCTATATGTGTGACCAAT
ATATATACCGGTATATATATATGTATATGTTGATAGTGGAAGATGTAGAG
CACCTGTCGTATACTGTCGAACTGTATACATATCCAACCAGCAATTATGA
GTTCTCCTTATAATACAAAACAGTACTCGACTCGAAAACGTAGCTCTACG
AGTACCTACGGATTCCATTTCCTGTATACAGATGGCACTGTCTGTAGTCG
AGGGTGACAGTAGTTCCATTTTCCAGACGTATAGGCTCTCTATAATATAC
CATATAATATATAGTAGCAAGGGGCATTTTCGTGACAGCAAAATATGAAA
TAGCCCTGCCTCTGGATGACCGTTGACTGAAGCGAATTCGGGTCGTCTAG
TTCCGCAGAATCACCTCACCTCCACTGGCACGCCCCTTTCGTTCCAGCGT
CGACATCGCCTCGATGTTCGTCAGCTTTACAACTTCGCGAAAAAAACGTG
CCACGCGTTCCAAAGCAATGGATGACCATACATGGTGGAACGGACCGGTA
GGTTCCAGGAACGCGTCTTCCCCCCCACATACACAGCTCTACACATATAT
TTCGTGACAAAACAAAAATGACTTGATGTATTAGACTATTTAATACTACC
TGGTACGAGAACAAGCATAACACACTGGAGCTATCATATAGGATCAGCTA
TTAGGATTGAGCATCAGCCGAGAATCAACTATGATGACCAGTATGAGACG
GAAGTTCACACTCTCCGTGAAGTTTAGCAATCGAACGGTCGATGGTGTCT
AGCGCCTTCGCAAATCTACTGTCCAGAATTTGAAGGGAAAGGAGTTGTCG
GGTCATTGACCCACCCGCATATTGGCTTCGGTTCTTTTTGTTTGAAACGT
GACCGATGTCGGAATGGGATGGTTTTACACGGATGGACATCGACTCGAAG
CATCCGTGTCTTGCAACAAAAGAACGAGAGTCTGGACTCACGTCTCGTAT
GTGCCAACTGACGGGCACTTTTACCTCTGTGACCCCCAACGCCTATCTAC
ATGAAGACACGTCTTTCCTCAACGGAGTGTGGCTGTCTTGACTGCGAAGG
TAAAGCAGACCCCAATCTGTCAAAACCATCACCTCTGATACCTTTTTGCT
CCAGTACATACCCACAGAAGAGCTACATAAATACTCTGTGCCAGTAGCGG
GATGTTGGAAAATATGGGTGTATATCAAGTAGATCATGGGATTTCCTGAA
TAGGTAGCATCCGTTACTTTAGTAGCAGCTATAGCTTGAAGACTACTAAC
CCTGTGCCAGCGGACGCTCCGTAGTAAAGGCCATCCGTACGCAATTGCGT
GACCTGATAAACTCTAATAGGGATTGACTCAGAGGCGATTGACGGTATAG
ATGGACGCCGTCGCGGAAAGCGACAGGAATCCCGTGAGTAAGCACCAAAT
TCAGCCTGGATGTAGAAAATGAGCGAGCTTACGCGGGACGAGACGGCAGG
CTCCATCTCGCAAGACCGAAATCTCAGGCATGATCGGGGACAGGGAAAAA
TAGTTTTTCTGTTTAGCTGATCACGAGCAAGTGCGGCAATCATCCCGGTC
GATGCCCAGTCTGCTACATGTGATGACCTTGCATACATGAATACATACCG
GTACTGTGTATTGCGTGCGGGAACTTATACACTCTCCGACCTTCGCGGCC
GCAGGATTTGGTAGCAGCCGTTCACAGCTCCTAAAACCCTGAGCAGGAGG
GAGAACGTACCGCTGGATCCGACCGATTTTTCGCGCGTCCGCATCCGCAT
CCGCGAAGCAACTCGCCCCGACCAAGGGAGCCGCGTGGACGACACCGTGA
GCGAACTCTCTCGCAGTCGACGGGCACGTGTCATCTGGTTCCGAGGGTCG
GCTAGGCGCTCGGAACATCGGGAGGTTGCTGAGTAACCGCACTGCCCTTG
TTCGGGCAAGGCCACCGCCAACTATACCATCACCGCGACCGCCACCGCCA
CAGAGGCTAGCTTCTCGGTGACGGCGAGTTAAGGGGTGACCTTTCGAGCC
CCGGTCGTGCTTGATGCGGCCTATGAAGGTGTTGCGACAGAGGATGTCAA
CGTCTGTCGGTGACGCTCAGGGATACACATCGATCCAACTCTCCGACGTG
GACGAGGGGGACGGGGATGAGAAGGAGTACTGGGCCAGTGGTGATGAGCA
AGGCGTCGGCAGAAGGAGGCGTCGACGAAGTGGGGCGGCGAGGGCGGAGG
AAGGGAGGCGTCTCGGGGACAGAGAGAGTGATCTTTGGCCGCACTATACG
CCGCTCTACACCAACATGAAGGTGTTGAGAAGGAAACGATTGGACGCGTC
CATGGTGTACTACAGGGCGGGCCCAGGTGGGTGGATGGGTTGTTTCGTCC
GCATGCGAGAAAGGTCTGTATTTTCCCCTCTTGAGACAGCTTATTTGTGT
TACGATGGCAGTTCTCTGCCACTCCTCTTAAGCTATTCGTTGTATCGCAT
ACCTGCACTTCATTTCGTTGCAACCAATCGGTTCTATATATATATATATA
TATTCATCAAGGTATCTCGCGATACATGTTGTGTTCGAAAATTTAGTGAA
GCCCTAGCAAAACGATGCCGTAAGCGCTCGGCGCAGAACCCAACTCTCTA
CGATCACATGCAGTTGTGGAAGATGTCAGCATCCTGTTGAGATCGTAGCT
GGCATACGCCGATATGTGGGCGAAGAGTCTTCCCATCATGACATGTTATG
AGCGTTCTGTGATGGAATCACTGGCGTCCGAATTCCATTCTACTCCCTCC
TCGGAGGGAGAGTCCTGTTCTAGAGTCGCTGGCGTCCGAATTCTATTAGA
TTCCCTCCTTGTAGGGAAACCCTGATACTCGCGAGACAAGGAGCACAGCA
CCATCCAACCACGGGAGTTCGTAGAGCAAGCCAGATGGAGTAATATTTGC
AAAGCTTCGATTGCTCAACAGGGGTAAGGGGGGGCGGGCAAGCAGTGATC
ACTTCGCGCGCAGCTTAACCAGCCATCTTTCTTCTTTCCTTATGATGCCT
CCTCGACAGGCACCAAGGCCTGCTTCCTCCTGTCGGTCTGGGGCGTCTTC
TTCCTGACTTGGCTTGGGGTAATGCTGGCCTTGGGATCGCCGTTCATCAT
CCCGAAAGACAGCCCGGAAGAGAAGCTCGCGCTGTCGCGCCCAGTCTTCG
GCGGTGCCGCAATGTATCTGGTTTGCGCTTTTCTCGCCGGGTTTTCGTGG
TACAAGTCGTCGTGCGGGGCGGGACGGTTGCCAACCATGGGGGAGGGTAG
TTTTGAGAATAGGTAGGTGAATAATGTAAGGGCCTGTGCTGACGCTAGTA
TATGCTACTGTATCGAATACTTGTACGATACGTCATATAATCATGTACCA
GGTACCTGGTATTCGTTGGAAATCACGTACGGGTAGGTGGGTGGCCACGA
TCGAGGTTCGGTGCTTGTGGCCCCTGCCCTTCTGGTCTTCTGCCGCAGCC
C
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Coding sequence (CDS) from alignment at F-serratus_M_contig833:172041..176841+

>mRNA_F-serratus_M_contig833.19723.1 ID=mRNA_F-serratus_M_contig833.19723.1|Name=mRNA_F-serratus_M_contig833.19723.1|organism=Fucus serratus male|type=CDS|length=1140bp|location=Sequence derived from alignment at F-serratus_M_contig833:172041..176841+ (Fucus serratus male)
ATGCGGCCTATGAAGGTGTTGCGACAGAGGATGTCAACGTCTGTCGGTGA
CGCTCAGGGATACACATCGATCCAACTCTCCGACGTGGACGAGGGGGACG
GGGATGAGAAGGAGTACTGGGCCAGTGGTGATGAGCAAGGCGTCGGCAGA
AGGAGGCGTCGACGAAGTGGGGCGGCGAGGGCGGAGGAAGGGAGGCGTCT
CGGGGACAGAGAGAGTGATCTTTGGCCGCACTATACGCCGCTCTACACCA
ACATGAAGGTGTTGAGAAGGAAACGATTGGACGCGTCCATGGTGTACTAC
AGGGCGGGCCCAGATGCGGCCTATGAAGGTGTTGCGACAGAGGATGTCAA
CGTCTGTCGGTGACGCTCAGGGATACACATCGATCCAACTCTCCGACGTG
GACGAGGGGGACGGGGATGAGAAGGAGTACTGGGCCAGTGGTGATGAGCA
AGGCGTCGGCAGAAGGAGGCGTCGACGAAGTGGGGCGGCGAGGGCGGAGG
AAGGGAGGCGTCTCGGGGACAGAGAGAGTGATCTTTGGCCGCACTATACG
CCGCTCTACACCAACATGAAGGTGTTGAGAAGGAAACGATTGGACGCGTC
CATGGTGTACTACAGGGCGGGCCCAGGCACCAAGGCCTGCTTCCTCCTGT
CGGTCTGGGGCGTCTTCTTCCTGACTTGGCTTGGGGTAATGCTGGCCTTG
GGATCGCCGTTCATCATCCCGAAAGACAGCCCGGAAGAGAAGCTCGCGCT
GTCGCGCCCAGTCTTCGGCGGTGCCGCAATGTATCTGGTTTGCGCTTTTC
TCGCCGGGTTTTCGTGGTACAAGTCGTCGTGCGGGGCGGGACGGTTGCCA
ACCATGGGGGAGGGTAGTTTTGAGAATAGGTAGGCACCAAGGCCTGCTTC
CTCCTGTCGGTCTGGGGCGTCTTCTTCCTGACTTGGCTTGGGGTAATGCT
GGCCTTGGGATCGCCGTTCATCATCCCGAAAGACAGCCCGGAAGAGAAGC
TCGCGCTGTCGCGCCCAGTCTTCGGCGGTGCCGCAATGTATCTGGTTTGC
GCTTTTCTCGCCGGGTTTTCGTGGTACAAGTCGTCGTGCGGGGCGGGACG
GTTGCCAACCATGGGGGAGGGTAGTTTTGAGAATAGGTAG
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