mRNA_F-serratus_M_contig832.19716.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig832.19716.1
Unique NamemRNA_F-serratus_M_contig832.19716.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig832.19716.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 3.200e-41
Identity = 99/241 (41.08%), Postives = 143/241 (59.34%), Query Frame = 1 
Query:   22 LEKLSERLADGVNARLKGIGQ----KIDFAAALARKCLLLSSKEDCDCPRLIWVEEDM-PNTAQPQSGRRYGHFRRV---RWLKR-GKTSTTR-FRVRFLCAHDYTPVACGADGNGYVLEQKDWQRWLLKCLPVLQLSLWALRVGVSFIARADVLPMDEMLATLKEIVGEEVAKKMEALDLRCASDGAGAMQSNLDRQVEVYGKAYKELAGLVKKEEGKIAEM---ARVVGSPMTGGKPSG 705
            L K  E +A   N +++ +GQ    K+D  AA+  KCLL+S ++D  CPRLI V ED+ P +A      R  HFRR    + L+R G+    + +R+RFLCA+D T   CG DG GY +E + WQ WL  CLPV+++SLW LRVG+S + RADVLP+D ++ TL+E+ GEE A  +  +DL         +   ++ Q +V+G AY ELA  V++ E KI +    A+  G+ + GG   G
Sbjct:  864 LRKGQEEMATSFNHQIQQLGQDMSRKLDCIAAVTSKCLLVSVEKDIPCPRLIMVLEDVSPGSALS----RLSHFRRDMVDKLLRREGEGPAPQCYRIRFLCAYDLTAGTCGKDGLGYKVEIQGWQEWLKACLPVIKVSLWLLRVGISVVTRADVLPVDGVIETLEEVAGEEAAGILGEIDLEGRRSSGQDLVDKVNAQEQVFGTAYAELAKWVQQREDKIGDGGDDAQTAGNTVGGGAADG 1100
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BLAST of mRNA_F-serratus_M_contig832.19716.1 vs. uniprot
Match: A0A6H5JSN1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN1_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 6.450e-40
Identity = 88/224 (39.29%), Postives = 140/224 (62.50%), Query Frame = 1 
Query:    1 MNLKIEQLEKLSERLADGVNARLK-----------GIGQKIDFAAALARKCLLLSSKEDCDCPRLIWV-EEDMPNTAQPQSGRRYGHFRR--VRWLKRGKTSTTR-FRVRFLCAHDYTPVACGADGNGYVLEQKDWQRWLLKCLPVLQLSLWALRVGVSFIARADVLPMDEMLATLKEIVGEEVAKKMEALDLR--CASDGAGAMQSNLDRQVEVYGKAYKELA 621
            +N+K+E+L +  + +A GV   L+            +  ++D  AA+  +CLL+S+++D  CPRLI V E+D+P + Q     R  HFRR  +  L  GK  T + +R+RFLCA+D +   CG DG GY +E   W+ WL K +PV+Q++LW +RVGVS ++RAD+LP+D+++  L+E+ GEE A  +  +D+R  C+  G   +Q  +DR+ EV+G A+ +LA
Sbjct:  672 INVKVEELGQKLDDIAGGVEKHLRKGQEEMASLREDVSLQLDCIAAVTSECLLVSAEKDIPCPRLIMVSEDDVPESDQS----RLSHFRREMMDQLFLGKGQTPQHYRIRFLCAYDLSAATCGEDGLGYKVEIGSWKGWLQKYMPVIQVALWTVRVGVSVVSRADILPVDDVMGKLREVAGEEAATMIGEIDVRGHCSLSGQDLVQE-VDRKAEVFGSAFNKLA 890
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BLAST of mRNA_F-serratus_M_contig832.19716.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.330e-13
Identity = 58/187 (31.02%), Postives = 96/187 (51.34%), Query Frame = 1 
Query:  106 LARKCLLLSSKEDCDCPRLIWVEEDMPNTAQPQSGRRYGHFRRVRWLKR-GKTSTTRFRVRFLCAHDYTPVACGADGNGYVLEQ-KDW-QRWLLKCLPVLQLSLWALRVGVSFIARADVLPMDEMLATLKEIVGEEVAKKMEALDLRCASDGA-----GAMQSNLDRQVEVYGKAYKELAGLVKKEE 642
            L  + LL +S E    PRL+ V  ++  TA+  +  R       RW K   +    +FRV FLC HD + V CG  G G+ ++  KDW ++WL    P++Q+SLW LRV V  ++  D LP++++L       G E+ + +  +  R +S        GA ++ +D   ++ GK+Y+ L   ++  E
Sbjct:  922 LLEQDLLPASDEQSAYPRLVLVRPEL-ETAEDMTHERIQRAGWDRWTKALSEMGFHKFRVHFLCGHDLSEVPCGPGGRGFPIKHPKDWVKQWL----PLMQVSLWMLRVAVGAVSNVD-LPLNKVLGAFVMATGAELLEGVGKVPDRISSAALPVFSEGATRAEMDGFKDLRGKSYEGLCKFMRDVE 1102
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig832.19716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JPJ1_9PHAE3.200e-4141.08Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JSN1_9PHAE6.450e-4039.29Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LKS5_ECTSI2.330e-1331.02LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig832contigF-serratus_M_contig832:33588..34959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size776
Cds size774
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig832.19716.1prot_F-serratus_M_contig832.19716.1Fucus serratus malepolypeptideF-serratus_M_contig832 33588..34959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932467.6282465-CDS-F-serratus_M_contig832:33587..339621622932467.6282465-CDS-F-serratus_M_contig832:33587..33962Fucus serratus maleCDSF-serratus_M_contig832 33588..33962 -
1690964323.1264775-CDS-F-serratus_M_contig832:33587..339621690964323.1264775-CDS-F-serratus_M_contig832:33587..33962Fucus serratus maleCDSF-serratus_M_contig832 33588..33962 -
1622932467.6415775-CDS-F-serratus_M_contig832:34319..346691622932467.6415775-CDS-F-serratus_M_contig832:34319..34669Fucus serratus maleCDSF-serratus_M_contig832 34320..34669 -
1690964323.1360497-CDS-F-serratus_M_contig832:34319..346691690964323.1360497-CDS-F-serratus_M_contig832:34319..34669Fucus serratus maleCDSF-serratus_M_contig832 34320..34669 -
1622932467.6566892-CDS-F-serratus_M_contig832:34910..349591622932467.6566892-CDS-F-serratus_M_contig832:34910..34959Fucus serratus maleCDSF-serratus_M_contig832 34911..34959 -
1690964323.144957-CDS-F-serratus_M_contig832:34910..349591690964323.144957-CDS-F-serratus_M_contig832:34910..34959Fucus serratus maleCDSF-serratus_M_contig832 34911..34959 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig832.19716.1

>prot_F-serratus_M_contig832.19716.1 ID=prot_F-serratus_M_contig832.19716.1|Name=mRNA_F-serratus_M_contig832.19716.1|organism=Fucus serratus male|type=polypeptide|length=258bp
MNLKIEQLEKLSERLADGVNARLKGIGQKIDFAAALARKCLLLSSKEDCD
CPRLIWVEEDMPNTAQPQSGRRYGHFRRVRWLKRGKTSTTRFRVRFLCAH
DYTPVACGADGNGYVLEQKDWQRWLLKCLPVLQLSLWALRVGVSFIARAD
VLPMDEMLATLKEIVGEEVAKKMEALDLRCASDGAGAMQSNLDRQVEVYG
KAYKELAGLVKKEEGKIAEMARVVGSPMTGGKPSGITAPIAGNIALPGDQ
GHPARQST
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mRNA from alignment at F-serratus_M_contig832:33588..34959-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig832.19716.1 ID=mRNA_F-serratus_M_contig832.19716.1|Name=mRNA_F-serratus_M_contig832.19716.1|organism=Fucus serratus male|type=mRNA|length=1372bp|location=Sequence derived from alignment at F-serratus_M_contig832:33588..34959- (Fucus serratus male)
ATGAACCTAAAAATCGAACAACTGGAGAAGCTATCGGAGCGCCTCGCAGG
TGAGTCAAGTCTACGTCGTGTTTTTTGACGTTGCACCTGGAAGAAAAATA
GTTGACAATATGGAGAGGAAATCAATTGTTAGAGTGTCGCTGGTCACCTG
CGTAAATTCAAACTCTCAACTCCAATAGGAGCGCATGGTTTAGCGATCAA
GTCTACAGGATTTTGAGAGATTTGATAAAACTGTGCGTTTCTTGGTGCTG
CAAAAATCAAACTCTACGTCCCCCGCACCTCTTTCAACAGATGGCGTTAA
CGCGCGTTTAAAGGGAATCGGGCAAAAGATAGATTTTGCGGCGGCCTTGG
CAAGGAAGTGTCTCTTGCTGTCTTCGAAGGAGGACTGTGACTGCCCTCGC
CTAATTTGGGTAGAAGAAGATATGCCGAACACCGCGCAGCCCCAGTCCGG
GCGACGATATGGCCACTTTCGCAGGGTGAGATGGCTTAAAAGGGGAAAGA
CTTCTACGACCAGGTTTCGTGTTCGCTTCTTGTGCGCCCACGACTACACA
CCCGTGGCATGTGGGGCTGATGGAAACGGTTACGTGCTGGAACAGAAGGA
CTGGCAAAGGTGGCTCCTGAAGTGCTTACCCGTGCTTCAGGTAAGAATGC
CACAATTCAGGGTGGGGCTCCCTTGGAGGTCCGGCTTAAATGCATTTATA
TTTTAATAGTTGAATCAAGTTGAACCCTGGCGTCTAGAACTCTGGAATCA
ATGTATTACTTCGTATAATAAGTTGCTTATGTTATAAAGCGTTTCAGTAG
AGGACTGCGATTGGCATCTTCGCTTTTCTAATACAACTGACTGGGGTACA
GTATGCTCAGAAGATCTAGACGCGTTCAGATTCTTCTTTGAATAACTTTG
AAGATATTTCATGCTGGCAACCGCCTGACATTTCGCTTATCATATTTCGG
GGTACTTGTTTTCTTGGAAATGTCCGGAAACTGTGTTGAACGTTCAGCTC
TCTCTATGGGCACTTCGTGTGGGTGTCTCCTTCATCGCTCGTGCGGATGT
ACTTCCGATGGATGAAATGCTGGCGACGCTCAAGGAGATCGTCGGCGAGG
AAGTTGCAAAGAAGATGGAGGCGCTAGACCTGAGGTGCGCGAGTGACGGG
GCGGGAGCAATGCAATCAAATCTCGACAGACAGGTCGAGGTCTACGGAAA
GGCGTACAAAGAGCTGGCGGGACTTGTGAAGAAAGAGGAAGGAAAAATCG
CGGAAATGGCGCGCGTTGTTGGCAGCCCCATGACAGGCGGCAAGCCGTCA
GGTATAACCGCACCGATCGCCGGCAACATCGCGTTACCGGGTGATCAGGG
ACATCCAGCAAGGCAGTCAACT
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Coding sequence (CDS) from alignment at F-serratus_M_contig832:33588..34959-

>mRNA_F-serratus_M_contig832.19716.1 ID=mRNA_F-serratus_M_contig832.19716.1|Name=mRNA_F-serratus_M_contig832.19716.1|organism=Fucus serratus male|type=CDS|length=1548bp|location=Sequence derived from alignment at F-serratus_M_contig832:33588..34959- (Fucus serratus male)
ATGAACCTAAAAATCGAACAACTGGAGAAGCTATCGGAGCGCCTCGCAGA
TGAACCTAAAAATCGAACAACTGGAGAAGCTATCGGAGCGCCTCGCAGAT
GGCGTTAACGCGCGTTTAAAGGGAATCGGGCAAAAGATAGATTTTGCGGC
GGCCTTGGCAAGGAAGTGTCTCTTGCTGTCTTCGAAGGAGGACTGTGACT
GCCCTCGCCTAATTTGGGTAGAAGAAGATATGCCGAACACCGCGCAGCCC
CAGTCCGGGCGACGATATGGCCACTTTCGCAGGGTGAGATGGCTTAAAAG
GGGAAAGACTTCTACGACCAGGTTTCGTGTTCGCTTCTTGTGCGCCCACG
ACTACACACCCGTGGCATGTGGGGCTGATGGAAACGGTTACGTGCTGGAA
CAGAAGGACTGGCAAAGGTGGCTCCTGAAGTGCTTACCCGTGCTTCAGAT
GGCGTTAACGCGCGTTTAAAGGGAATCGGGCAAAAGATAGATTTTGCGGC
GGCCTTGGCAAGGAAGTGTCTCTTGCTGTCTTCGAAGGAGGACTGTGACT
GCCCTCGCCTAATTTGGGTAGAAGAAGATATGCCGAACACCGCGCAGCCC
CAGTCCGGGCGACGATATGGCCACTTTCGCAGGGTGAGATGGCTTAAAAG
GGGAAAGACTTCTACGACCAGGTTTCGTGTTCGCTTCTTGTGCGCCCACG
ACTACACACCCGTGGCATGTGGGGCTGATGGAAACGGTTACGTGCTGGAA
CAGAAGGACTGGCAAAGGTGGCTCCTGAAGTGCTTACCCGTGCTTCAGCT
CTCTCTATGGGCACTTCGTGTGGGTGTCTCCTTCATCGCTCGTGCGGATG
TACTTCCGATGGATGAAATGCTGGCGACGCTCAAGGAGATCGTCGGCGAG
GAAGTTGCAAAGAAGATGGAGGCGCTAGACCTGAGGTGCGCGAGTGACGG
GGCGGGAGCAATGCAATCAAATCTCGACAGACAGGTCGAGGTCTACGGAA
AGGCGTACAAAGAGCTGGCGGGACTTGTGAAGAAAGAGGAAGGAAAAATC
GCGGAAATGGCGCGCGTTGTTGGCAGCCCCATGACAGGCGGCAAGCCGTC
AGGTATAACCGCACCGATCGCCGGCAACATCGCGTTACCGGGTGATCAGG
GACATCCAGCAAGGCAGTCAACTCTCTCTCTATGGGCACTTCGTGTGGGT
GTCTCCTTCATCGCTCGTGCGGATGTACTTCCGATGGATGAAATGCTGGC
GACGCTCAAGGAGATCGTCGGCGAGGAAGTTGCAAAGAAGATGGAGGCGC
TAGACCTGAGGTGCGCGAGTGACGGGGCGGGAGCAATGCAATCAAATCTC
GACAGACAGGTCGAGGTCTACGGAAAGGCGTACAAAGAGCTGGCGGGACT
TGTGAAGAAAGAGGAAGGAAAAATCGCGGAAATGGCGCGCGTTGTTGGCA
GCCCCATGACAGGCGGCAAGCCGTCAGGTATAACCGCACCGATCGCCGGC
AACATCGCGTTACCGGGTGATCAGGGACATCCAGCAAGGCAGTCAACT
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