mRNA_F-serratus_M_contig831.19711.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig831.19711.1
Unique NamemRNA_F-serratus_M_contig831.19711.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig831.19711.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 6.800e-30
Identity = 59/92 (64.13%), Postives = 75/92 (81.52%), Query Frame = 3
Query:  369 FTTQVAARRNSRNRAAGTMETRMVDVTKAVYKEKMLNDVFPAIKRMWPGG-DRNVLVQQDNAPAHKIADDPDIVAAGTSDGWNIRLLNQPPN 641
            FT Q AA+RNSRNRAAGTMET+ V+VTK V+K K++++VFPAIK  WPGG  R + +Q DN P+H+I  DPD+VAAG +DGW+IRL+NQP N
Sbjct:   97 FTVQRAAQRNSRNRAAGTMETKCVEVTKEVFKRKVVDEVFPAIKARWPGGRGRTIYIQLDNKPSHRINADPDVVAAGIADGWDIRLINQPSN 188          
BLAST of mRNA_F-serratus_M_contig831.19711.1 vs. uniprot
Match: A0A6H5KWV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV2_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 5.710e-23
Identity = 49/89 (55.06%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  101 LNWALQFVRTGHGGIRKFDPMENIVMVDEKCFFFKKNGQRYYLREGEEAPVSRVQHKSHIQKVMFLAAVGRPRRDTVNNRNFDGKIGIF 367
            L+WAL++VR   G   KF    + + +DEK F+  K GQRYY  EGE  P+ +VQHKSH+ KVMFLAAV RPR D+  +R FDGKIGI+
Sbjct:   34 LSWALRWVRPSAGDAHKFHHFFDFLHLDEKWFYICKQGQRYYFYEGEHLPIRKVQHKSHVIKVMFLAAVARPRYDSSRSRQFDGKIGIY 122          
BLAST of mRNA_F-serratus_M_contig831.19711.1 vs. uniprot
Match: A0A6A4ZEB5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZEB5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.570e-21
Identity = 52/107 (48.60%), Postives = 67/107 (62.62%), Query Frame = 2
Query:   47 AASRFLKPILTDSGKIRRLNWALQFVRTGHGGIRKFDPMENIVMVDEKCFFFKKNGQRYYLREGEEAPVSRVQHKSHIQKVMFLAAVGRPRRDTVNNRNFDGKIGIF 367
            A S +LKP LTD+    RL +A+ F+R+G G  + F  M +IV VDEK F+  KN   YY+ + E   +  VQ KSHI KVMFLAAV RPR D      FDGK+G++
Sbjct:  149 AKSNWLKPRLTDANIKLRLEFAMSFLRSGPGDRQVFSDMHDIVHVDEKWFYLTKNKSVYYIYDDEVLAIRSVQSKSHITKVMFLAAVARPRYDFARREMFDGKLGVW 255          
BLAST of mRNA_F-serratus_M_contig831.19711.1 vs. uniprot
Match: W4FXV7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FXV7_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.610e-21
Identity = 50/109 (45.87%), Postives = 69/109 (63.30%), Query Frame = 2
Query:   41 LRAASRFLKPILTDSGKIRRLNWALQFVRTGHGGIRKFDPMENIVMVDEKCFFFKKNGQRYYLREGEEAPVSRVQHKSHIQKVMFLAAVGRPRRDTVNNRNFDGKIGIF 367
            L+A S ++KP+LT+   + R+   L+F+R   GG R F+ M + V VDEK FF  K  +R+Y+ + EE  +  V+ K  I KVMFLAAV RPR D    + FDGKIGI+
Sbjct:    7 LKARSSYVKPLLTEVNMVARVEHCLRFLRVMPGGGRVFENMHDYVHVDEKWFFLTKVNRRFYVYDDEELALRSVKSKRFITKVMFLAAVARPRYDHHAKKEFDGKIGIW 115          
BLAST of mRNA_F-serratus_M_contig831.19711.1 vs. uniprot
Match: A0A485LER1_9STRA (Aste57867_19841 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LER1_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.480e-21
Identity = 53/113 (46.90%), Postives = 70/113 (61.95%), Query Frame = 2
Query:   29 KKLGLRAASRFLKPILTDSGKIRRLNWALQFVRTGHGGIRKFDPMENIVMVDEKCFFFKKNGQRYYLREGEEAPVSRVQHKSHIQKVMFLAAVGRPRRDTVNNRNFDGKIGIF 367
            K+  L+  S  +KP+LTD  K  RL +A  F+R+G  G   F+ M N V VDEK FF  +  +++Y+ E E   +  V+ K  I KVMFLAAV RPR D   NR+FDGKIGI+
Sbjct:  136 KEKTLKGRSNRVKPLLTDDNKKARLKFAFNFLRSGLCGSHFFENMYNYVHVDEKWFFITQVNRKFYVYEDETVALRAVKSKRFITKVMFLAAVARPRHDAHRNRHFDGKIGIW 248          
BLAST of mRNA_F-serratus_M_contig831.19711.1 vs. uniprot
Match: A0A485LQU3_9STRA (Aste57867_24566 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQU3_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.690e-21
Identity = 52/109 (47.71%), Postives = 65/109 (59.63%), Query Frame = 2
Query:   41 LRAASRFLKPILTDSGKIRRLNWALQFVRTGHGGIRKFDPMENIVMVDEKCFFFKKNGQRYYLREGEEAPVSRVQHKSHIQKVMFLAAVGRPRRDTVNNRNFDGKIGIF 367
            L+  S ++KP L D+ KI R+ +AL F+R G  G   FD M N V VDEK FFF K  + +Y+ E EE      + K  I KVMFLAAV RPR D      FDGK+GI+
Sbjct:    7 LKGRSSYVKPALMDANKIERVTFALGFLRPGPHGSHFFDDMYNRVHVDEKWFFFTKVKRTFYVYEDEELVHRAAKSKRFITKVMFLAAVARPRYDHHLKCTFDGKLGIW 115          
BLAST of mRNA_F-serratus_M_contig831.19711.1 vs. uniprot
Match: A0A485LKF5_9STRA (Aste57867_13079 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LKF5_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 7.900e-21
Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 2
Query:   26 LKKLGLRAASRFLKPILTDSGKIRRLNWALQFVRTGHGGIRKFDPMENIVMVDEKCFFFKKNGQRYYLREGEEAPVSRVQHKSHIQKVMFLAAVGRPRRDTVNNRNFDGKIGIF 367
            +K+  L+A S + KP+L+D  K  R+ +A  F+R    G   F PM   V VDEK FF  K  +++Y+ E E   +  V++K  I KVMFLAAV RPR D    R FDGKIGI+
Sbjct:    1 MKESNLKAKSSYSKPMLSDDNKDDRMRFASSFLRPQSNGTHLFAPMHEYVHVDEKWFFLTKAKKKFYVYEDETLALRAVKNKKFITKVMFLAAVARPRYDPHRRREFDGKIGIW 114          
BLAST of mRNA_F-serratus_M_contig831.19711.1 vs. uniprot
Match: A0A6A3XBC6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3XBC6_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.490e-20
Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = 2
Query:   14 LQQNLKKLGLRAASRFLKPILTDSGKIRRLNWALQFVRTGHGGIRKFDPMENIVMVDEKCFFFKKNGQRYYLREG------EEAPVSRVQHKSHIQKVMFLAAVGRPRRDTVNNRNFDGKIGIF 367
            +QQ +K+  +R A R  +P+LT S ++ RL +A+  V+    G   FDPM ++V +DEK F+ KK GQR Y+  G      EEAPV  VQ K HI+KVMFL AV RPR D      +DGKIG++
Sbjct:   55 VQQLIKEGYMRRALRQTRPLLTASHRVARLKFAVNHVKLNGDGQYYFDPMFDVVHIDEKWFYVKKIGQRVYVLTGKDGTPLEEAPVQYVQSKRHIKKVMFLCAVARPRGD------WDGKIGLW 172          
BLAST of mRNA_F-serratus_M_contig831.19711.1 vs. uniprot
Match: W4GCT3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GCT3_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.660e-20
Identity = 50/109 (45.87%), Postives = 69/109 (63.30%), Query Frame = 2
Query:   41 LRAASRFLKPILTDSGKIRRLNWALQFVRTGHGGIRKFDPMENIVMVDEKCFFFKKNGQRYYLREGEEAPVSRVQHKSHIQKVMFLAAVGRPRRDTVNNRNFDGKIGIF 367
            L+A S ++KP+LT+   + R+   L+F+R   GG R F+ M + V VDEK FF  K  +R+Y+ + EE  +  V+ K  I KVMFLAAV RPR D    + FDGKIGI+
Sbjct:    7 LKARSSYVKPLLTEVNMVARVEHCLRFLRRMPGGGRVFENMHDYVHVDEKWFFLTKVKRRFYVYDDEELALRSVKSKRFITKVMFLAAVARPRYDHHTKKEFDGKIGIW 115          
BLAST of mRNA_F-serratus_M_contig831.19711.1 vs. uniprot
Match: A0A6A4ZGT3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZGT3_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.330e-20
Identity = 50/109 (45.87%), Postives = 68/109 (62.39%), Query Frame = 2
Query:   41 LRAASRFLKPILTDSGKIRRLNWALQFVRTGHGGIRKFDPMENIVMVDEKCFFFKKNGQRYYLREGEEAPVSRVQHKSHIQKVMFLAAVGRPRRDTVNNRNFDGKIGIF 367
            L+A S +++P+LTD+ K  R+ +A  F+R   GG   F  M + V VDEK F+  K  +RYY+ + EE      +HKSHI K+MFLAAV RPR D      FDGKIG++
Sbjct:   47 LKARSSYIRPMLTDANKRARIKFAASFLRPTSGGTT-FVNMHDYVHVDEKWFYLTKVKRRYYVYDDEEVAARACKHKSHITKIMFLAAVARPRYDPHTRSFFDGKIGVW 154          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig831.19711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGY9_9PHAE6.800e-3064.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWV2_9PHAE5.710e-2355.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A4ZEB5_9STRA1.570e-2148.60Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4FXV7_9STRA2.610e-2145.87Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A485LER1_9STRA3.480e-2146.90Aste57867_19841 protein n=2 Tax=Aphanomyces stella... [more]
A0A485LQU3_9STRA4.690e-2147.71Aste57867_24566 protein n=1 Tax=Aphanomyces stella... [more]
A0A485LKF5_9STRA7.900e-2144.74Aste57867_13079 protein n=2 Tax=Aphanomyces stella... [more]
A0A6A3XBC6_9STRA1.490e-2045.97Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
W4GCT3_9STRA1.660e-2045.87Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A4ZGT3_9STRA2.330e-2045.87Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig831contigF-serratus_M_contig831:213142..213782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue6.7e-12
Seed eggNOG ortholog90675.XP_010462775.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size641
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig831.19711.1prot_F-serratus_M_contig831.19711.1Fucus serratus malepolypeptideF-serratus_M_contig831 213302..213781 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932466.8600633-UTR-F-serratus_M_contig831:213141..2133011622932466.8600633-UTR-F-serratus_M_contig831:213141..213301Fucus serratus maleUTRF-serratus_M_contig831 213142..213301 +
1690964322.691348-UTR-F-serratus_M_contig831:213141..2133011690964322.691348-UTR-F-serratus_M_contig831:213141..213301Fucus serratus maleUTRF-serratus_M_contig831 213142..213301 +
1622932466.891621-UTR-F-serratus_M_contig831:213781..2137821622932466.891621-UTR-F-serratus_M_contig831:213781..213782Fucus serratus maleUTRF-serratus_M_contig831 213782..213782 +
1690964322.7219694-UTR-F-serratus_M_contig831:213781..2137821690964322.7219694-UTR-F-serratus_M_contig831:213781..213782Fucus serratus maleUTRF-serratus_M_contig831 213782..213782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932466.876465-CDS-F-serratus_M_contig831:213301..2137811622932466.876465-CDS-F-serratus_M_contig831:213301..213781Fucus serratus maleCDSF-serratus_M_contig831 213302..213781 +
1690964322.7058282-CDS-F-serratus_M_contig831:213301..2137811690964322.7058282-CDS-F-serratus_M_contig831:213301..213781Fucus serratus maleCDSF-serratus_M_contig831 213302..213781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig831.19711.1

>prot_F-serratus_M_contig831.19711.1 ID=prot_F-serratus_M_contig831.19711.1|Name=mRNA_F-serratus_M_contig831.19711.1|organism=Fucus serratus male|type=polypeptide|length=160bp
MENIVMVDEKCFFFKKNGQRYYLREGEEAPVSRVQHKSHIQKVMFLAAVG
RPRRDTVNNRNFDGKIGIFFHDAGGSPTEQQEPGCGNDGNQDGGCDKGRV
QGKDAKRRVPGHQAHVAGWGPKRLSATGQCSRAQNRRRPGHCGGGYVRRL
EHQATQPAA*
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mRNA from alignment at F-serratus_M_contig831:213142..213782+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig831.19711.1 ID=mRNA_F-serratus_M_contig831.19711.1|Name=mRNA_F-serratus_M_contig831.19711.1|organism=Fucus serratus male|type=mRNA|length=641bp|location=Sequence derived from alignment at F-serratus_M_contig831:213142..213782+ (Fucus serratus male)
GACGCAGCAAGGGCTCCAGCAAAACCTCAAGAAGCTTGGCTTGCGTGCGG CGTCCCGATTTCTCAAGCCGATCCTCACGGATTCAGGAAAAATACGGAGG CTGAACTGGGCGCTTCAGTTTGTACGCACGGGGCATGGTGGCATCCGGAA GTTCGACCCCATGGAGAACATAGTCATGGTGGACGAAAAATGTTTTTTTT TTAAGAAGAACGGACAGAGGTACTACCTTCGTGAAGGCGAAGAAGCACCT GTGAGCAGGGTGCAGCATAAATCACACATACAGAAGGTCATGTTTCTTGC AGCCGTCGGTCGTCCGCGCAGAGACACGGTGAACAACCGCAATTTCGACG GGAAGATCGGCATCTTCTTTCACGACGCAGGTGGCAGCCCGACGGAACAG CAGGAACCGGGCTGCGGGAACGATGGAAACCAGGATGGTGGATGTGACAA AGGCCGTGTACAAGGAAAAGATGCTAAACGACGTGTTCCCGGCCATCAAG CGCATGTGGCCGGGTGGGGACCGAAACGTCTTAGTGCAACAGGACAATGC TCCCGCGCACAAAATCGCCGACGACCCGGACATTGTGGCGGCGGGTACGT CCGACGGTTGGAACATCAGGCTACTCAACCAGCCGCCTAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig831:213142..213782+

>mRNA_F-serratus_M_contig831.19711.1 ID=mRNA_F-serratus_M_contig831.19711.1|Name=mRNA_F-serratus_M_contig831.19711.1|organism=Fucus serratus male|type=CDS|length=960bp|location=Sequence derived from alignment at F-serratus_M_contig831:213142..213782+ (Fucus serratus male)
ATGGAGAACATAGTCATGGTGGACGAAAAATGTTTTTTTTTTAAGAAGAA
CGGACAGAGGTACTACCTTCGTGAAGGCGAAGAAGCACCTGTGAGCAGGG
TGCAGCATAAATCACACATACAGAAGGTCATGTTTCTTGCAGCCGTCGGT
CGTCCGCGCAGAGACACGGTGAACAACCGCAATTTCGACGGGAAGATCGG
CATCTTCTTTCACGACGCAGGTGGCAGCCCGACGGAACAGCAGGAACCGG
GCTGCGGGAACGATGGAAACCAGGATGGTGGATGTGACAAAGGCCGTGTA
CAAGGAAAAGATGCTAAACGACGTGTTCCCGGCCATCAAGCGCATGTGGC
CGGGTGGGGACCGAAACGTCTTAGTGCAACAGGACAATGCTCCCGCGCAC
AAAATCGCCGACGACCCGGACATTGTGGCGGCGGGTACGTCCGACGGTTG
GAACATCAGGCTACTCAACCAGCCGCCTAAATGGAGAACATAGTCATGGT
GGACGAAAAATGTTTTTTTTTTAAGAAGAACGGACAGAGGTACTACCTTC
GTGAAGGCGAAGAAGCACCTGTGAGCAGGGTGCAGCATAAATCACACATA
CAGAAGGTCATGTTTCTTGCAGCCGTCGGTCGTCCGCGCAGAGACACGGT
GAACAACCGCAATTTCGACGGGAAGATCGGCATCTTCTTTCACGACGCAG
GTGGCAGCCCGACGGAACAGCAGGAACCGGGCTGCGGGAACGATGGAAAC
CAGGATGGTGGATGTGACAAAGGCCGTGTACAAGGAAAAGATGCTAAACG
ACGTGTTCCCGGCCATCAAGCGCATGTGGCCGGGTGGGGACCGAAACGTC
TTAGTGCAACAGGACAATGCTCCCGCGCACAAAATCGCCGACGACCCGGA
CATTGTGGCGGCGGGTACGTCCGACGGTTGGAACATCAGGCTACTCAACC
AGCCGCCTAA
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