mRNA_F-serratus_M_contig83.19694.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig83.19694.1
Unique NamemRNA_F-serratus_M_contig83.19694.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig83.19694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig83contigF-serratus_M_contig83:681375..682975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size565
Cds size564
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig83.19694.1prot_F-serratus_M_contig83.19694.1Fucus serratus malepolypeptideF-serratus_M_contig83 681375..682974 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932457.275022-CDS-F-serratus_M_contig83:681374..6815991622932457.275022-CDS-F-serratus_M_contig83:681374..681599Fucus serratus maleCDSF-serratus_M_contig83 681375..681599 +
1690964317.877957-CDS-F-serratus_M_contig83:681374..6815991690964317.877957-CDS-F-serratus_M_contig83:681374..681599Fucus serratus maleCDSF-serratus_M_contig83 681375..681599 +
1622932457.2929976-CDS-F-serratus_M_contig83:682153..6822841622932457.2929976-CDS-F-serratus_M_contig83:682153..682284Fucus serratus maleCDSF-serratus_M_contig83 682154..682284 +
1690964317.8907673-CDS-F-serratus_M_contig83:682153..6822841690964317.8907673-CDS-F-serratus_M_contig83:682153..682284Fucus serratus maleCDSF-serratus_M_contig83 682154..682284 +
1622932457.3515675-CDS-F-serratus_M_contig83:682766..6829741622932457.3515675-CDS-F-serratus_M_contig83:682766..682974Fucus serratus maleCDSF-serratus_M_contig83 682767..682974 +
1690964317.9121044-CDS-F-serratus_M_contig83:682766..6829741690964317.9121044-CDS-F-serratus_M_contig83:682766..682974Fucus serratus maleCDSF-serratus_M_contig83 682767..682974 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig83.19694.1

>prot_F-serratus_M_contig83.19694.1 ID=prot_F-serratus_M_contig83.19694.1|Name=mRNA_F-serratus_M_contig83.19694.1|organism=Fucus serratus male|type=polypeptide|length=188bp
IEEITLQQDITTPLVASPLRPRRGRSTSPAPSSSDNGTPNSDIPTVSENG
DAGEARLHRVKILSPGRPDRRAAGPVGDVRPGTPPRPPVRAERCGWNTAP
GLIRGRSAGSLSPPSSRPGLPGTTAAHRNPRRLATSTSTGSNLVAAPNSP
PRAKSPTKSRRKPLTETLTDSPPWPLPGAAAALGRSSS
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mRNA from alignment at F-serratus_M_contig83:681375..682975+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig83.19694.1 ID=mRNA_F-serratus_M_contig83.19694.1|Name=mRNA_F-serratus_M_contig83.19694.1|organism=Fucus serratus male|type=mRNA|length=1601bp|location=Sequence derived from alignment at F-serratus_M_contig83:681375..682975+ (Fucus serratus male)
ATTGAGGAAATAACGCTCCAGCAGGATATTACAACTCCCTTGGTGGCCTC
TCCGCTTCGACCGCGGAGAGGAAGGTCGACCTCGCCAGCACCCTCTAGCA
GCGATAACGGCACCCCCAATTCCGACATCCCGACGGTGTCGGAAAATGGC
GACGCCGGGGAGGCACGCTTACATCGTGTCAAGATTTTATCGCCTGGTCG
CCCTGATCGACGCGCAGCAGGACCGGTGATGCGTTTTGCCGCGATAATTG
GATTTTTTTTTAGTGTTTATACAGTGTTTACTACAGGTTTATACAGTGTT
TACAGTGTCTATACAGTGTTTACAGTGTTTAGAGCAGAATAAAACAATGA
ACATATTTTTCTGAGTATGCGCCAGAAAGCGGCTCAGCGCCGTGGCACCC
AAAAGCGAGATTGGTTGCTATTTTTGGTACTCTGCCTCTTTCCCCCTTCT
CCCCCCCCCTCCCTCCCTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCACCCTCAAAGAGAAAACGTCGTGTCGCGTATATGGGGTTTAATTT
AATGCCTTGAGCCACGCTTTTTTCGTGATTTTTTGTGTTTTTTTTAAGAC
TCGGTTGTAATCGGATTTGTGATTTGACTTGAGGGGCGCTACGACCGAAA
AACACAAACAGTACGTACATTGGAGATCGTTTTTGCTGAAGCAGCAGCAG
CAACATCAAGGCGGCGATTACCAGCATTCAAGCATTTGGTTATTTTCACT
CTGAGAGACTCCTATCCGTGCGTGCTCAGGTCGGGGATGTTAGGCCCGGA
ACCCCTCCACGTCCCCCGGTTCGCGCTGAGCGTTGCGGGTGGAACACTGC
TCCCGGTCTGATCAGGGGTCGATCGGCGGGGTCTTTGTCGCCACCATCAT
CCCGTCCGGGGTAAGATATGAGGCGCTATTGCCCCCTGGGGATGCTCTCC
CCGGGTATTGGAGATGCTTTTGTTAACAGCTATTGCCAGTGCCGCTCAAG
ACAGGGTGTTAGGGCTTTTGCGCGTTGTTGGTCGGGAATAATCTCACCGA
AGCAAATTCAGACAATCACATAAACTTTCTACTCTAGTAGTCTGACCCTG
TACGAATTCCATCTGTGGTTCGAACTGGCAGACCAAAATAAAAACGCCTG
GGTTTTTACCTAAGTGAGGCGCGGAAGTTTCGAGTTGGTTTTGGGCTCTC
CGAGCGGGCACACCTTGAAGGCAGTAAGTACAACACAACGGATATCTATC
CTGTACTTGAACTCTGCAGATACCTGGTTTGTGTGAACCCGCCACGTGGC
GGTAACCCCTGCGCGTCCCGAAGATGGCGTTCACTCGTTCGTCGGCAGAA
ACGTGAGCACGTAGCCCTATATTTTTATGTTTTCCTGCGCAGGTTGCCGG
GGACGACAGCGGCGCACAGGAATCCCCGACGGCTCGCAACATCAACCAGC
ACCGGCAGCAATCTCGTAGCGGCACCCAACTCTCCCCCGCGTGCGAAATC
GCCTACGAAGTCGCGTAGAAAACCTCTGACGGAAACGCTGACGGATTCGC
CGCCGTGGCCACTGCCGGGGGCTGCCGCCGCCCTTGGCCGGTCGTCGTCG
C
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Coding sequence (CDS) from alignment at F-serratus_M_contig83:681375..682975+

>mRNA_F-serratus_M_contig83.19694.1 ID=mRNA_F-serratus_M_contig83.19694.1|Name=mRNA_F-serratus_M_contig83.19694.1|organism=Fucus serratus male|type=CDS|length=1128bp|location=Sequence derived from alignment at F-serratus_M_contig83:681375..682975+ (Fucus serratus male)
ATTGAGGAAATAACGCTCCAGCAGGATATTACAACTCCCTTGGTGGCCTC
TCCGCTTCGACCGCGGAGAGGAAGGTCGACCTCGCCAGCACCCTCTAGCA
GCGATAACGGCACCCCCAATTCCGACATCCCGACGGTGTCGGAAAATGGC
GACGCCGGGGAGGCACGCTTACATCGTGTCAAGATTTTATCGCCTGGTCG
CCCTGATCGACGCGCAGCAGGACCGATTGAGGAAATAACGCTCCAGCAGG
ATATTACAACTCCCTTGGTGGCCTCTCCGCTTCGACCGCGGAGAGGAAGG
TCGACCTCGCCAGCACCCTCTAGCAGCGATAACGGCACCCCCAATTCCGA
CATCCCGACGGTGTCGGAAAATGGCGACGCCGGGGAGGCACGCTTACATC
GTGTCAAGATTTTATCGCCTGGTCGCCCTGATCGACGCGCAGCAGGACCG
GTCGGGGATGTTAGGCCCGGAACCCCTCCACGTCCCCCGGTTCGCGCTGA
GCGTTGCGGGTGGAACACTGCTCCCGGTCTGATCAGGGGTCGATCGGCGG
GGTCTTTGTCGCCACCATCATCCCGTCCGGGGTCGGGGATGTTAGGCCCG
GAACCCCTCCACGTCCCCCGGTTCGCGCTGAGCGTTGCGGGTGGAACACT
GCTCCCGGTCTGATCAGGGGTCGATCGGCGGGGTCTTTGTCGCCACCATC
ATCCCGTCCGGGGTTGCCGGGGACGACAGCGGCGCACAGGAATCCCCGAC
GGCTCGCAACATCAACCAGCACCGGCAGCAATCTCGTAGCGGCACCCAAC
TCTCCCCCGCGTGCGAAATCGCCTACGAAGTCGCGTAGAAAACCTCTGAC
GGAAACGCTGACGGATTCGCCGCCGTGGCCACTGCCGGGGGCTGCCGCCG
CCCTTGGCCGGTCGTCGTCGGTTGCCGGGGACGACAGCGGCGCACAGGAA
TCCCCGACGGCTCGCAACATCAACCAGCACCGGCAGCAATCTCGTAGCGG
CACCCAACTCTCCCCCGCGTGCGAAATCGCCTACGAAGTCGCGTAGAAAA
CCTCTGACGGAAACGCTGACGGATTCGCCGCCGTGGCCACTGCCGGGGGC
TGCCGCCGCCCTTGGCCGGTCGTCGTCG
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