mRNA_F-serratus_M_contig83.19692.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig83.19692.1
Unique NamemRNA_F-serratus_M_contig83.19692.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig83.19692.1 vs. uniprot
Match: D8LIK8_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK8_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 5.210e-19
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:   49 AEAFGSSCIEGVRLVVEWLGSVESVVRAMAVSTSWRDAVRPDADRLYKVIVRRAGVTPRRRAAFWEYLVLR 261
            AEAFGS C  GV LVVE+LGSVESV  AM VS+SW+ AV  D  RLYK IVRRAGVTP  RA FWE+++LR
Sbjct: 1267 AEAFGSRCPAGVCLVVEFLGSVESVPTAMLVSSSWKTAVLSDQQRLYKGIVRRAGVTPLWRAGFWEFMILR 1337
[Close]
BLAST of mRNA_F-serratus_M_contig83.19692.1 vs. uniprot
Match: A0A6H5L5V9_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V9_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 7.400e-12
Identity = 49/110 (44.55%), Postives = 55/110 (50.00%), Query Frame = 1 
Query:   49 AEAFGSSCIEGVRLVVEWLGSVES--------------------------------------VVRAMAVSTSWRDAVRPDADRLYKVIVRRAGVTPRRRAAFWEYLVLRR 264
            AEAFG  C  GV LVVE+LGSVES                                      V RA+ VS SW+ AV  D  RLYK IVRRAGVTP  RA FWE+++LRR
Sbjct: 1514 AEAFGWRCPAGVCLVVEFLGSVESLPLGTHAIIILTIAAHLLTCIRDAYVCVCTRVKPRVQSVPRAVLVSCSWKAAVLSDQQRLYKGIVRRAGVTPLWRAGFWEFMILRR 1623
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig83.19692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIK8_ECTSI5.210e-1969.01Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5L5V9_9PHAE7.400e-1244.55Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig83contigF-serratus_M_contig83:556522..558249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue3.9e-17
Seed eggNOG ortholog2880.D8LIK8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size354
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig83.19692.1prot_F-serratus_M_contig83.19692.1Fucus serratus malepolypeptideF-serratus_M_contig83 556522..558249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932460.2070594-CDS-F-serratus_M_contig83:556521..5566121622932460.2070594-CDS-F-serratus_M_contig83:556521..556612Fucus serratus maleCDSF-serratus_M_contig83 556522..556612 -
1690964319.289473-CDS-F-serratus_M_contig83:556521..5566121690964319.289473-CDS-F-serratus_M_contig83:556521..556612Fucus serratus maleCDSF-serratus_M_contig83 556522..556612 -
1622932460.2257147-CDS-F-serratus_M_contig83:557298..5574441622932460.2257147-CDS-F-serratus_M_contig83:557298..557444Fucus serratus maleCDSF-serratus_M_contig83 557299..557444 -
1690964319.3022063-CDS-F-serratus_M_contig83:557298..5574441690964319.3022063-CDS-F-serratus_M_contig83:557298..557444Fucus serratus maleCDSF-serratus_M_contig83 557299..557444 -
1622932460.2678556-CDS-F-serratus_M_contig83:558132..5582491622932460.2678556-CDS-F-serratus_M_contig83:558132..558249Fucus serratus maleCDSF-serratus_M_contig83 558133..558249 -
1690964319.312828-CDS-F-serratus_M_contig83:558132..5582491690964319.312828-CDS-F-serratus_M_contig83:558132..558249Fucus serratus maleCDSF-serratus_M_contig83 558133..558249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig83.19692.1

>prot_F-serratus_M_contig83.19692.1 ID=prot_F-serratus_M_contig83.19692.1|Name=mRNA_F-serratus_M_contig83.19692.1|organism=Fucus serratus male|type=polypeptide|length=118bp
MERRAVGDVGGEHQAVAEAFGSSCIEGVRLVVEWLGSVESVVRAMAVSTS
WRDAVRPDADRLYKVIVRRAGVTPRRRAAFWEYLVLRRPPRPRQQAGDST
DPLRSLCTSSPWSSPSSS
back to top

mRNA from alignment at F-serratus_M_contig83:556522..558249-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig83.19692.1 ID=mRNA_F-serratus_M_contig83.19692.1|Name=mRNA_F-serratus_M_contig83.19692.1|organism=Fucus serratus male|type=mRNA|length=1728bp|location=Sequence derived from alignment at F-serratus_M_contig83:556522..558249- (Fucus serratus male)
ATGGAGAGGAGAGCGGTCGGGGACGTGGGAGGAGAGCACCAGGCGGTGGC
CGAGGCGTTTGGTTCAAGTTGCATCGAGGGGGTACGATTAGTGGTGGAAT
GGCTTGGCAGCGTCGAGGTGAGAGTTTGGTCGTCCCCCGCGGTCTGGACT
ATTTTTTCCTCCGTTTTTTTTGCATTTCAGGTTTTAGTGTGAGATTCACG
TTGTGTAGCGGATGGTCTTCTTATGTGCCCGCGGCGGCCTTTTTTGCTGC
GGTGCTGCGTTTTTTTTTTCGTTTTTTTCAAATCATACTTAAAGCCGATG
GACCTCATCATTACCATCCTGCCTGTGGTAGCTAAGGATCTTCCCATCTC
TCCCCGGTTCACGCCGTACGATTTTTATCGCGATGCAAGTTCAGCAATCT
TACAACTCGTCACCCAATGGTTGAATATGAAGACGGGATACACTCGGACG
ATTCAGGACATGGAAGCCGTGGTGAATCATTTCAAAATTTGGTTTTGCTT
GAGCTATGTCATTTGGAGGAGCTCGCTTACCGTCACACACCTTCGCCTCC
ATTGTAGGTCTCTTATATTTTATCCCGTACGGATACACGGAACTCGTCCC
CATCCTCTCACCGATGTCGCGCGCACCTTCGACCACATCGTTCCCGGTTG
ACCGGGCAACTACCATAACCCCTTGAGCTTTAACGCCCCGCTTCCCGCTC
AACCACGCTATACACTCTCGGCGCACATCAACCCTTTTTCGCGAAAACAC
GCTCCCAGCTCACTGTAACCCCGTCACCCCTTGTCACCCCGCGACGTGGT
GCCAGAGCGTGGTTAGGGCGATGGCGGTGTCAACATCGTGGAGAGATGCG
GTGAGGCCGGATGCGGACCGCCTCTACAAGGTTATCGTGCGCCGTGCGGG
CGTGACACCACGCCGGCGAGCGGCTTTCTGGGAGTACCTGGTACTTCGCA
GGTGTGGCAGCTGCGAGGGCCAGCGAGTATGAGCGGGTGGTCGGGTTAAT
GGTTCGTCTCTTTCCGCTGGTCTCATCCGTGCTTTGATCGTTTTTGTTGA
TCGTATCGGTTCGTCCATTTATGATTTTTCGGCGGAAAGGAGTTGATTGG
AAGGAGGCGTTATCGTAAAACTCGAGCCCTTTGATCGTGTTTTCTTTTCT
TTTTGATCGTTCCGTGTCTGTTTCAAGGTATCGGTGATGCTTGTACCGAA
AAGTTGTGAGTGCGGTTCTCTATGGTGTCTCCGGAACGCGGGGGCGGAGG
AGAAGCGAGGCATCGAAGGTTCTCATTAGCGTATTTATTATCTCATCCAG
GGTCGTCATCTTTACATTTTCGTCTCTCTTGTATGTAGTCGATTCTTAAT
CGCGTGCGTTTGATCTTATGATTTTTCATGCATGGTTGAAGCTTATCGCC
AAGTCGTTTTTGGAAAACACGGTGTCGTTTTCTGTCTCCTTGCTGTATAT
GTATAGCTCTTTATACCGACAGCTGTAAGTATTCACACGGGTGGGGGATT
GTCTGACGGCTTCCAAGATGAGCTTGACCACGTCCTCCCCTCCCGATGAG
CTCGACCACGCCCTCCCTCCCGCCCTCCACCCCACTACTCAAACTTTTCT
CCGTCCCGCTTTTCATCCCCCGGTGGCGTCGGAACAGACCTCCACGCCCT
CGGCAGCAGGCCGGCGATTCCACAGACCCGCTCCGTTCACTCTGCACGTC
ATCGCCATGGTCATCGCCATCTTCATCG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig83:556522..558249-

>mRNA_F-serratus_M_contig83.19692.1 ID=mRNA_F-serratus_M_contig83.19692.1|Name=mRNA_F-serratus_M_contig83.19692.1|organism=Fucus serratus male|type=CDS|length=708bp|location=Sequence derived from alignment at F-serratus_M_contig83:556522..558249- (Fucus serratus male)
ATGGAGAGGAGAGCGGTCGGGGACGTGGGAGGAGAGCACCAGGCGGTGGC
CGAGGCGTTTGGTTCAAGTTGCATCGAGGGGGTACGATTAGTGGTGGAAT
GGCTTGGCAGCGTCGAGATGGAGAGGAGAGCGGTCGGGGACGTGGGAGGA
GAGCACCAGGCGGTGGCCGAGGCGTTTGGTTCAAGTTGCATCGAGGGGGT
ACGATTAGTGGTGGAATGGCTTGGCAGCGTCGAGAGCGTGGTTAGGGCGA
TGGCGGTGTCAACATCGTGGAGAGATGCGGTGAGGCCGGATGCGGACCGC
CTCTACAAGGTTATCGTGCGCCGTGCGGGCGTGACACCACGCCGGCGAGC
GGCTTTCTGGGAGTACCTGGTACTTCGCAGAGCGTGGTTAGGGCGATGGC
GGTGTCAACATCGTGGAGAGATGCGGTGAGGCCGGATGCGGACCGCCTCT
ACAAGGTTATCGTGCGCCGTGCGGGCGTGACACCACGCCGGCGAGCGGCT
TTCTGGGAGTACCTGGTACTTCGCAGACCTCCACGCCCTCGGCAGCAGGC
CGGCGATTCCACAGACCCGCTCCGTTCACTCTGCACGTCATCGCCATGGT
CATCGCCATCTTCATCGACCTCCACGCCCTCGGCAGCAGGCCGGCGATTC
CACAGACCCGCTCCGTTCACTCTGCACGTCATCGCCATGGTCATCGCCAT
CTTCATCG
back to top