mRNA_F-serratus_M_contig8260.19673.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8260.19673.1
Unique NamemRNA_F-serratus_M_contig8260.19673.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig8260.19673.1 vs. uniprot
Match: A0A6H5LA89_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA89_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 5.630e-20
Identity = 54/187 (28.88%), Postives = 103/187 (55.08%), Query Frame = 1 
Query:   19 ADIFMMWQNKMLTYLASKGCRDAIAETANPVFVGDASISQEQLLRRHSPEVIDSSNCAYGILMDAMVGYPLVEAKMQEAKSPSGAWKALQNFYMPKTIAEKRRVARELESIKMVDDEDPVEYFGRIDKALQKLALLGGQKDEDDVNVHIIEKLSSKYFVEKKILLSRQGITRAEIDELIRSAYMSDK 579
            AD F+ W+ + L Y+ +   +  I  +A    V  +   +  L R++  +++      +  +++A VG P  E  +    S +GAW+ ++++Y+P   A+ + +  EL++I M DDEDP  +F R+ +   KL  +G  K E +V   ++ +L ++Y VEK+  LS + +TRAE+ +++R  Y + K
Sbjct:  109 ADTFLSWRRRFLAYVDNHNLQHTIFGSAEVPVV--SCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPF-ENNLYSCHSVAGAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSEQEVVRILVRQLPARYDVEKRTSLSNRDLTRAELQDVVRGRYATLK 292
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8260.19673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LA89_9PHAE5.630e-2028.88Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8260contigF-serratus_M_contig8260:371..949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size549
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932454.3565755-UTR-F-serratus_M_contig8260:370..4001622932454.3565755-UTR-F-serratus_M_contig8260:370..400Fucus serratus maleUTRF-serratus_M_contig8260 371..400 +
1690964316.596769-UTR-F-serratus_M_contig8260:370..4001690964316.596769-UTR-F-serratus_M_contig8260:370..400Fucus serratus maleUTRF-serratus_M_contig8260 371..400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932454.375018-CDS-F-serratus_M_contig8260:400..9491622932454.375018-CDS-F-serratus_M_contig8260:400..949Fucus serratus maleCDSF-serratus_M_contig8260 401..949 +
1690964316.6073985-CDS-F-serratus_M_contig8260:400..9491690964316.6073985-CDS-F-serratus_M_contig8260:400..949Fucus serratus maleCDSF-serratus_M_contig8260 401..949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8260.19673.1prot_F-serratus_M_contig8260.19673.1Fucus serratus malepolypeptideF-serratus_M_contig8260 401..949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8260.19673.1

>prot_F-serratus_M_contig8260.19673.1 ID=prot_F-serratus_M_contig8260.19673.1|Name=mRNA_F-serratus_M_contig8260.19673.1|organism=Fucus serratus male|type=polypeptide|length=183bp
MMWQNKMLTYLASKGCRDAIAETANPVFVGDASISQEQLLRRHSPEVIDS
SNCAYGILMDAMVGYPLVEAKMQEAKSPSGAWKALQNFYMPKTIAEKRRV
ARELESIKMVDDEDPVEYFGRIDKALQKLALLGGQKDEDDVNVHIIEKLS
SKYFVEKKILLSRQGITRAEIDELIRSAYMSDK
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mRNA from alignment at F-serratus_M_contig8260:371..949+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8260.19673.1 ID=mRNA_F-serratus_M_contig8260.19673.1|Name=mRNA_F-serratus_M_contig8260.19673.1|organism=Fucus serratus male|type=mRNA|length=579bp|location=Sequence derived from alignment at F-serratus_M_contig8260:371..949+ (Fucus serratus male)
CCCAAGTTTGATGGTCGTGCAGACATCTTTATGATGTGGCAGAACAAGAT
GCTGACCTATCTTGCGTCAAAAGGGTGCCGTGATGCGATCGCAGAGACTG
CGAACCCGGTGTTTGTTGGTGATGCCAGCATATCGCAGGAACAACTGTTG
AGACGTCATTCGCCCGAGGTAATAGATTCCTCTAATTGCGCGTACGGTAT
TCTGATGGATGCAATGGTCGGGTACCCTCTTGTAGAGGCAAAAATGCAAG
AGGCAAAATCGCCGAGCGGTGCCTGGAAGGCACTGCAAAACTTCTACATG
CCCAAAACGATCGCGGAGAAACGCAGGGTTGCACGGGAGTTGGAGTCAAT
AAAGATGGTAGATGATGAAGACCCTGTAGAATACTTTGGACGTATCGACA
AGGCTCTGCAAAAACTGGCTTTGCTCGGAGGCCAGAAGGACGAGGATGAT
GTGAACGTGCATATTATCGAAAAATTGTCCTCGAAGTATTTCGTGGAGAA
AAAGATCCTCCTTTCCCGCCAAGGCATTACGAGAGCAGAAATCGATGAGC
TCATTCGCAGTGCCTACATGTCCGACAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig8260:371..949+

>mRNA_F-serratus_M_contig8260.19673.1 ID=mRNA_F-serratus_M_contig8260.19673.1|Name=mRNA_F-serratus_M_contig8260.19673.1|organism=Fucus serratus male|type=CDS|length=1098bp|location=Sequence derived from alignment at F-serratus_M_contig8260:371..949+ (Fucus serratus male)
ATGATGTGGCAGAACAAGATGCTGACCTATCTTGCGTCAAAAGGGTGCCG
TGATGCGATCGCAGAGACTGCGAACCCGGTGTTTGTTGGTGATGCCAGCA
TATCGCAGGAACAACTGTTGAGACGTCATTCGCCCGAGGTAATAGATTCC
TCTAATTGCGCGTACGGTATTCTGATGGATGCAATGGTCGGGTACCCTCT
TGTAGAGGCAAAAATGCAAGAGGCAAAATCGCCGAGCGGTGCCTGGAAGG
CACTGCAAAACTTCTACATGCCCAAAACGATCGCGGAGAAACGCAGGGTT
GCACGGGAGTTGGAGTCAATAAAGATGGTAGATGATGAAGACCCTGTAGA
ATACTTTGGACGTATCGACAAGGCTCTGCAAAAACTGGCTTTGCTCGGAG
GCCAGAAGGACGAGGATGATGTGAACGTGCATATTATCGAAAAATTGTCC
TCGAAGTATTTCGTGGAGAAAAAGATCCTCCTTTCCCGCCAAGGCATTAC
GAGAGCAGAAATCGATGAGCTCATTCGCAGTGCCTACATGTCCGACAAAA
TGATGTGGCAGAACAAGATGCTGACCTATCTTGCGTCAAAAGGGTGCCGT
GATGCGATCGCAGAGACTGCGAACCCGGTGTTTGTTGGTGATGCCAGCAT
ATCGCAGGAACAACTGTTGAGACGTCATTCGCCCGAGGTAATAGATTCCT
CTAATTGCGCGTACGGTATTCTGATGGATGCAATGGTCGGGTACCCTCTT
GTAGAGGCAAAAATGCAAGAGGCAAAATCGCCGAGCGGTGCCTGGAAGGC
ACTGCAAAACTTCTACATGCCCAAAACGATCGCGGAGAAACGCAGGGTTG
CACGGGAGTTGGAGTCAATAAAGATGGTAGATGATGAAGACCCTGTAGAA
TACTTTGGACGTATCGACAAGGCTCTGCAAAAACTGGCTTTGCTCGGAGG
CCAGAAGGACGAGGATGATGTGAACGTGCATATTATCGAAAAATTGTCCT
CGAAGTATTTCGTGGAGAAAAAGATCCTCCTTTCCCGCCAAGGCATTACG
AGAGCAGAAATCGATGAGCTCATTCGCAGTGCCTACATGTCCGACAAA
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