mRNA_F-serratus_M_contig823.19627.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig823.19627.1
Unique NamemRNA_F-serratus_M_contig823.19627.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig823.19627.1 vs. uniprot
Match: A0A6H5L932_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L932_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.510e-10
Identity = 103/277 (37.18%), Postives = 121/277 (43.68%), Query Frame = 1 
Query:  868 GDGFREWSAFDDSPPRAGPERGQMHPEPQHPGRGPPPPRG--GGLERRGPAGLGM---DPTDRRMPPP-ELLGGIEPDPRGRRPQGRPHGPDDYDYFDDHFED-GFRRPRPPGGGLQAPVPPPSDHRQGDGDPYFRDIPPGSRRXXXXXXQQHPGRMVEKRRYEDAFDGEPPSIRPMR-----RDIPGPGRGEELPLGRVDPAMQRDF-DDDRYGPPPIQARGPRGPPPKNVPI-DH---AGAHNTRMIRGDRPMPQDRPPH---VGGVRYSRPQDG 1638
            G GF+EWSAFD+SPPRA P R      P   GRG P           RGP  +G    +  +R MPP  E   G E   R RR + RP          D +ED G+  PR P    Q     P   R                 XXXXXX QHP RM +KRRYEDAF+ EP    P+R     R+  GPG       G +DP  Q DF  +DRY   P +  G RGP        +H         RM+R  RP  +  PPH    GG  Y   QDG
Sbjct: 1299 GSGFQEWSAFDESPPRAAPPRRAPMGAPAGGGRGHPXXXXPXXXXXXRGPGRMGPPQGEHPERGMPPHGEYYDGAERPLRMRRREARPXXX--XXXXXDQYEDAGYYPPRGP---RQPEELMPQARRASXXXXXXXXXXXXX--XXXXXXXQHPERMPDKRRYEDAFEDEPMRGPPLRNRPDPREFTGPGDDPRHGSG-LDP-QQYDFRQEDRYAQGPPRGSGGRGPXXXXXXXXEHYPGGPPQRPRMMRDGRPPQEGGPPHGVRPGGGDYLPMQDG 1566
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig823.19627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L932_9PHAE3.510e-1037.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig823contigF-serratus_M_contig823:188286..191531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1901
Cds size1899
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig823.19627.1prot_F-serratus_M_contig823.19627.1Fucus serratus malepolypeptideF-serratus_M_contig823 188288..191531 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932445.0779526-CDS-F-serratus_M_contig823:188287..1887401622932445.0779526-CDS-F-serratus_M_contig823:188287..188740Fucus serratus maleCDSF-serratus_M_contig823 188288..188740 -
1690964312.157346-CDS-F-serratus_M_contig823:188287..1887401690964312.157346-CDS-F-serratus_M_contig823:188287..188740Fucus serratus maleCDSF-serratus_M_contig823 188288..188740 -
1622932445.1576345-CDS-F-serratus_M_contig823:189106..1892441622932445.1576345-CDS-F-serratus_M_contig823:189106..189244Fucus serratus maleCDSF-serratus_M_contig823 189107..189244 -
1690964312.1712825-CDS-F-serratus_M_contig823:189106..1892441690964312.1712825-CDS-F-serratus_M_contig823:189106..189244Fucus serratus maleCDSF-serratus_M_contig823 189107..189244 -
1622932445.1745503-CDS-F-serratus_M_contig823:189532..1896431622932445.1745503-CDS-F-serratus_M_contig823:189532..189643Fucus serratus maleCDSF-serratus_M_contig823 189533..189643 -
1690964312.182519-CDS-F-serratus_M_contig823:189532..1896431690964312.182519-CDS-F-serratus_M_contig823:189532..189643Fucus serratus maleCDSF-serratus_M_contig823 189533..189643 -
1622932445.2022998-CDS-F-serratus_M_contig823:190039..1901321622932445.2022998-CDS-F-serratus_M_contig823:190039..190132Fucus serratus maleCDSF-serratus_M_contig823 190040..190132 -
1690964312.1910427-CDS-F-serratus_M_contig823:190039..1901321690964312.1910427-CDS-F-serratus_M_contig823:190039..190132Fucus serratus maleCDSF-serratus_M_contig823 190040..190132 -
1622932445.2250042-CDS-F-serratus_M_contig823:190427..1915311622932445.2250042-CDS-F-serratus_M_contig823:190427..191531Fucus serratus maleCDSF-serratus_M_contig823 190428..191531 -
1690964312.1999435-CDS-F-serratus_M_contig823:190427..1915311690964312.1999435-CDS-F-serratus_M_contig823:190427..191531Fucus serratus maleCDSF-serratus_M_contig823 190428..191531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig823.19627.1

>prot_F-serratus_M_contig823.19627.1 ID=prot_F-serratus_M_contig823.19627.1|Name=mRNA_F-serratus_M_contig823.19627.1|organism=Fucus serratus male|type=polypeptide|length=633bp
RRAEGRGGGGRPGREAIDGTLNDPRRKKPRHDKDDVGRNPDRSLMLEERA
PFDGPERGRPIASRYALPGADGGRDRDRGNRAGVFDDGQGWRPRDDADYP
PWRERAGAGRGRGGRGDIPAPGGRGRGGGREFRSPRGRDGSPVAAFESGW
EADWGRGGGRGRGGRSSGRGGGRGIRDGPGRFEFDDDRSGRGRTLERGPI
GRRGDIRFREDELPVHSEGVSKGDWEEDRRRRPPAAELLPPEWDHDARSR
ARGRGGGRDGTGQYGSQREGGGWDRDGEEWRRGGPPHVDGDGFREWSAFD
DSPPRAGPERGQMHPEPQHPGRGPPPPRGGGLERRGPAGLGMDPTDRRMP
PPELLGGIEPDPRGRRPQGRPHGPDDYDYFDDHFEDGFRRPRPPGGGLQA
PVPPPSDHRQGDGDPYFRDIPPGSRRQPPPHHQQHPGRMVEKRRYEDAFD
GEPPSIRPMRRDIPGPGRGEELPLGRVDPAMQRDFDDDRYGPPPIQARGP
RGPPPKNVPIDHAGAHNTRMIRGDRPMPQDRPPHVGGVRYSRPQDGPPHE
GPPPDGPMFDAPHHVRDVDYHGGRGREGGGPSTRHVRGGPDSRGPPGPGG
PPGPGVPPGPRGPPGPGGPPGPRGGLSGPGVPP
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mRNA from alignment at F-serratus_M_contig823:188286..191531-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig823.19627.1 ID=mRNA_F-serratus_M_contig823.19627.1|Name=mRNA_F-serratus_M_contig823.19627.1|organism=Fucus serratus male|type=mRNA|length=3246bp|location=Sequence derived from alignment at F-serratus_M_contig823:188286..191531- (Fucus serratus male)
CGTCGGGCAGAAGGGCGCGGCGGCGGTGGCCGACCCGGACGAGAGGCGAT
CGATGGTACGCTAAATGATCCTCGAAGGAAGAAGCCTCGCCACGACAAAG
ACGACGTTGGTCGCAATCCCGATCGTTCCTTGATGCTCGAAGAGCGTGCA
CCGTTCGACGGCCCTGAGCGTGGGAGACCGATTGCTTCCCGTTACGCACT
GCCTGGGGCAGACGGTGGAAGGGACAGAGACAGAGGCAACAGAGCCGGAG
TATTCGATGATGGGCAAGGATGGCGACCGCGGGACGACGCAGACTACCCG
CCATGGCGGGAACGGGCCGGAGCTGGTCGTGGACGCGGCGGGAGGGGGGA
CATACCCGCTCCAGGTGGCCGTGGCAGGGGAGGTGGGCGCGAGTTTCGCA
GCCCGCGTGGGCGGGATGGATCTCCCGTCGCAGCTTTTGAGAGTGGCTGG
GAAGCCGATTGGGGTCGCGGAGGTGGCCGCGGTCGCGGAGGTCGCAGCAG
CGGTCGTGGTGGTGGCCGGGGCATAAGAGATGGGCCAGGTCGTTTCGAAT
TCGACGATGACAGAAGCGGTCGTGGTCGCACGCTTGAGCGAGGGCCGATA
GGCCGCAGAGGAGACATTCGCTTCCGTGAAGACGAGCTACCCGTCCATTC
CGAAGGCGTTTCAAAAGGTGACTGGGAAGAAGATCGGCGTAGACGACCAC
CCGCTGCCGAGCTGTTGCCGCCGGAATGGGATCATGACGCCCGCTCTCGT
GCTCGAGGAAGAGGCGGCGGTCGGGATGGCACCGGACAATACGGGTCACA
AAGGGAGGGTGGCGGCTGGGATCGGGACGGCGAGGAATGGCGTCGCGGGG
GGCCACCGCATGTTGACGGCGATGGGTTCCGTGAATGGTCTGCGTTCGAT
GACTCGCCGCCGCGCGCAGGCCCCGAAAGGGGTCAGATGCATCCAGAGCC
GCAGCACCCTGGTCGTGGGCCACCCCCGCCGCGGGGCGGGGGCTTGGAGC
GGCGTGGACCTGCGGGGCTTGGTATGGATCCTACAGATCGGCGGATGCCG
CCTCCAGAGCTCCTTGGCGGTATTGAACCAGACCCCAGAGGGCGAAGGCC
TCAGGTAGTTGGACCGCCCTATTCGAGCTATCACTGATATAATATCTACA
TGTGTCGATCGGCAAGCGTCTTTCATTGCTCTAAGTTATCGAACCACACA
ATATTGTAGCCTCTCGAGTTTCCTGTTGCGTCGCCCGTTGTTCGGAGGGA
GATATGGTATGTACGATGACGTGACGCGTTGCCATGACTGCATTATGGTA
TAACGTTGTAATACAGGATTATCACCCTGTGTCCTCGAGATATCGGCGGT
CATTACCTTTCCCGCCGTGTGTCCCCGCTGAATATCTATCTGCTTGTAGG
GGAGACCGCATGGTCCAGACGACTACGATTACTTTGATGATCACTTCGAA
GATGGCTTCCGCCGTCCACGTCCTCCAGGGGGCGGGCTTCAGGTTCGTGG
ATACCGCGTATGGTGATCGTCGTGCTCTCCCTGAAATTTTGTCCCTGAGG
AGTACCTAACACAGAACTTTGCGTGGTTGACGCCCCGGAAATCCTTAAGT
CACTTTTCTTTGAGCGCTTACAGTTAAAGTCTCAAGCGACTGGGTTTTTG
TCGCAACCCCGTAGGTGCACGTTTTACTCGCGACGTACCTATCATAGCTT
CTTGCTCCAAGTGGTGGCTTTCAAGACAGAGCACTGTTGCTGCTTGGCCT
ATACTTACTTCAAGTGATTGCAGCCGTGTTTGCGATAGCGCTTGACCGCT
GACATTTTATCCAAAGCCGCACTAAAAAAACTCTACTGCCCAGCGAACAG
CCTGACAAGCGTCGCGGCGATTCTCTCAACTTTGGCAGGCGCCAGTACCA
CCGCCATCCGACCACCGCCAGGGCGATGGCGATCCCTACTTCCGCGACAT
CCCCCCAGGCTCTCGCAGGCAACCGCCTCCGCACCACCAGCAGCACCCGG
CGAGTAGTGGTAGAGGGTTGGGAACAAACTGCGTCTTTAGAGGTTCAACC
CCTCTCTGAACAAAACTTCGTCGACAGAGCTTTACTACGCCATCTCTTCC
TTCAACTCCTGATCTTTGGCTTCTCTTTTCCAACTTTGCCCTACATCGTC
GATGAGCCCCTCCCCCCTGATGATTGATGATAGACCTTCTTCGTGAAACA
CGATGCCAACTTTTCTGGTGGCTAACCCGCTTGTACCACCTTCATTTTGG
CTTCTCGTTAACCGTACTGGTATGTTTGTGCCTTCAGGGGAGAATGGTCG
AGAAGCGTCGGTACGAGGATGCCTTCGACGGTGAACCTCCATCAATCCGG
CCCATGCGGAGGGACATTCCTGGTCCGGGTCGCGGAGAGGAGCTACCGCT
TGGGCGCGTAGACCCTGCCATGCAGGTGCCAAAGATACACTTGAGAAATC
GACCAACAAGGCTGCTGCTGCAGCTCGTGCAGTTGGTGGTGGACCCCGCG
GTTGCCAACCTGTAACATGCTTTCTTTTGGTCGGACGTTTTCGGGTTCTG
GACGAGCTTGTCGGGCAAAACACCTAGGGTGGAGGGGGGCTTCTGTAATT
TTCCAGTGTGGTGTTGCCGCGCGCTTGATCTACGCCGTTCCCCACCTTTC
GCATCTGCACCCGTTGGCCGATAACGGTGTGTTCGCGCCTCCTGCTCTGC
CGTTATCTGTCATGACGTTATTTTCTACCCTCTCCTCTTCTCTTTTTTGT
TTGCGTGTCTCCTCTTTTCCTCACCCTCTCCGCTGCAACAGCGCGATTTT
GACGACGATCGGTACGGCCCTCCACCCATTCAAGCACGGGGTCCTCGAGG
CCCGCCCCCGAAAAATGTCCCAATAGACCATGCTGGCGCGCACAACACGC
GGATGATTAGGGGAGATCGTCCGATGCCGCAAGATCGACCCCCTCACGTC
GGTGGTGTAAGGTACTCCCGTCCTCAGGATGGTCCGCCTCACGAAGGCCC
CCCGCCCGACGGACCTATGTTCGATGCACCCCACCACGTGCGAGATGTAG
ACTATCATGGCGGTAGAGGGCGTGAGGGTGGCGGCCCCTCAACCCGCCAT
GTGCGAGGTGGACCCGACTCAAGAGGCCCCCCCGGCCCTGGAGGACCACC
AGGCCCAGGGGTACCTCCCGGCCCAAGAGGGCCACCCGGTCCCGGAGGAC
CACCAGGTCCACGAGGAGGATTGTCTGGCCCAGGAGTACCACCCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig823:188286..191531-

>mRNA_F-serratus_M_contig823.19627.1 ID=mRNA_F-serratus_M_contig823.19627.1|Name=mRNA_F-serratus_M_contig823.19627.1|organism=Fucus serratus male|type=CDS|length=3798bp|location=Sequence derived from alignment at F-serratus_M_contig823:188286..191531- (Fucus serratus male)
CGTCGGGCAGAAGGGCGCGGCGGCGGTGGCCGACCCGGACGAGAGGCGAT
CGATGGTACGCTAAATGATCCTCGAAGGAAGAAGCCTCGCCACGACAAAG
ACGACGTTGGTCGCAATCCCGATCGTTCCTTGATGCTCGAAGAGCGTGCA
CCGTTCGACGGCCCTGAGCGTGGGAGACCGATTGCTTCCCGTTACGCACT
GCCTGGGGCAGACGGTGGAAGGGACAGAGACAGAGGCAACAGAGCCGGAG
TATTCGATGATGGGCAAGGATGGCGACCGCGGGACGACGCAGACTACCCG
CCATGGCGGGAACGGGCCGGAGCTGGTCGTGGACGCGGCGGGAGGGGGGA
CATACCCGCTCCAGGTGGCCGTGGCAGGGGAGGTGGGCGCGAGTTTCGCA
GCCCGCGTGGGCGGGATGGATCTCCCGTCGCAGCTTTTGAGAGTGGCTGG
GAAGCCGATTGGGGTCGCGGAGGTGGCCGCGGTCGCGGAGGTCGCAGCAG
CGGTCGTGGTGGTGGCCGGGGCATAAGAGATGGGCCAGGTCGTTTCGAAT
TCGACGATGACAGAAGCGGTCGTGGTCGCACGCTTGAGCGAGGGCCGATA
GGCCGCAGAGGAGACATTCGCTTCCGTGAAGACGAGCTACCCGTCCATTC
CGAAGGCGTTTCAAAAGGTGACTGGGAAGAAGATCGGCGTAGACGACCAC
CCGCTGCCGAGCTGTTGCCGCCGGAATGGGATCATGACGCCCGCTCTCGT
GCTCGAGGAAGAGGCGGCGGTCGGGATGGCACCGGACAATACGGGTCACA
AAGGGAGGGTGGCGGCTGGGATCGGGACGGCGAGGAATGGCGTCGCGGGG
GGCCACCGCATGTTGACGGCGATGGGTTCCGTGAATGGTCTGCGTTCGAT
GACTCGCCGCCGCGCGCAGGCCCCGAAAGGGGTCAGATGCATCCAGAGCC
GCAGCACCCTGGTCGTGGGCCACCCCCGCCGCGGGGCGGGGGCTTGGAGC
GGCGTGGACCTGCGGGGCTTGGTATGGATCCTACAGATCGGCGGATGCCG
CCTCCAGAGCTCCTTGGCGGTATTGAACCAGACCCCAGAGGGCGAAGGCC
TCAGCGTCGGGCAGAAGGGCGCGGCGGCGGTGGCCGACCCGGACGAGAGG
CGATCGATGGTACGCTAAATGATCCTCGAAGGAAGAAGCCTCGCCACGAC
AAAGACGACGTTGGTCGCAATCCCGATCGTTCCTTGATGCTCGAAGAGCG
TGCACCGTTCGACGGCCCTGAGCGTGGGAGACCGATTGCTTCCCGTTACG
CACTGCCTGGGGCAGACGGTGGAAGGGACAGAGACAGAGGCAACAGAGCC
GGAGTATTCGATGATGGGCAAGGATGGCGACCGCGGGACGACGCAGACTA
CCCGCCATGGCGGGAACGGGCCGGAGCTGGTCGTGGACGCGGCGGGAGGG
GGGACATACCCGCTCCAGGTGGCCGTGGCAGGGGAGGTGGGCGCGAGTTT
CGCAGCCCGCGTGGGCGGGATGGATCTCCCGTCGCAGCTTTTGAGAGTGG
CTGGGAAGCCGATTGGGGTCGCGGAGGTGGCCGCGGTCGCGGAGGTCGCA
GCAGCGGTCGTGGTGGTGGCCGGGGCATAAGAGATGGGCCAGGTCGTTTC
GAATTCGACGATGACAGAAGCGGTCGTGGTCGCACGCTTGAGCGAGGGCC
GATAGGCCGCAGAGGAGACATTCGCTTCCGTGAAGACGAGCTACCCGTCC
ATTCCGAAGGCGTTTCAAAAGGTGACTGGGAAGAAGATCGGCGTAGACGA
CCACCCGCTGCCGAGCTGTTGCCGCCGGAATGGGATCATGACGCCCGCTC
TCGTGCTCGAGGAAGAGGCGGCGGTCGGGATGGCACCGGACAATACGGGT
CACAAAGGGAGGGTGGCGGCTGGGATCGGGACGGCGAGGAATGGCGTCGC
GGGGGGCCACCGCATGTTGACGGCGATGGGTTCCGTGAATGGTCTGCGTT
CGATGACTCGCCGCCGCGCGCAGGCCCCGAAAGGGGTCAGATGCATCCAG
AGCCGCAGCACCCTGGTCGTGGGCCACCCCCGCCGCGGGGCGGGGGCTTG
GAGCGGCGTGGACCTGCGGGGCTTGGTATGGATCCTACAGATCGGCGGAT
GCCGCCTCCAGAGCTCCTTGGCGGTATTGAACCAGACCCCAGAGGGCGAA
GGCCTCAGGGGAGACCGCATGGTCCAGACGACTACGATTACTTTGATGAT
CACTTCGAAGATGGCTTCCGCCGTCCACGTCCTCCAGGGGGCGGGCTTCA
GGGGAGACCGCATGGTCCAGACGACTACGATTACTTTGATGATCACTTCG
AAGATGGCTTCCGCCGTCCACGTCCTCCAGGGGGCGGGCTTCAGGCGCCA
GTACCACCGCCATCCGACCACCGCCAGGGCGATGGCGATCCCTACTTCCG
CGACATCCCCCCAGGCTCTCGCAGGCAACCGCCTCCGCACCACCAGCAGC
ACCCGGCGCCAGTACCACCGCCATCCGACCACCGCCAGGGCGATGGCGAT
CCCTACTTCCGCGACATCCCCCCAGGCTCTCGCAGGCAACCGCCTCCGCA
CCACCAGCAGCACCCGGGGAGAATGGTCGAGAAGCGTCGGTACGAGGATG
CCTTCGACGGTGAACCTCCATCAATCCGGCCCATGCGGAGGGACATTCCT
GGTCCGGGTCGCGGAGAGGAGCTACCGCTTGGGCGCGTAGACCCTGCCAT
GCAGGGGAGAATGGTCGAGAAGCGTCGGTACGAGGATGCCTTCGACGGTG
AACCTCCATCAATCCGGCCCATGCGGAGGGACATTCCTGGTCCGGGTCGC
GGAGAGGAGCTACCGCTTGGGCGCGTAGACCCTGCCATGCAGCGCGATTT
TGACGACGATCGGTACGGCCCTCCACCCATTCAAGCACGGGGTCCTCGAG
GCCCGCCCCCGAAAAATGTCCCAATAGACCATGCTGGCGCGCACAACACG
CGGATGATTAGGGGAGATCGTCCGATGCCGCAAGATCGACCCCCTCACGT
CGGTGGTGTAAGGTACTCCCGTCCTCAGGATGGTCCGCCTCACGAAGGCC
CCCCGCCCGACGGACCTATGTTCGATGCACCCCACCACGTGCGAGATGTA
GACTATCATGGCGGTAGAGGGCGTGAGGGTGGCGGCCCCTCAACCCGCCA
TGTGCGAGGTGGACCCGACTCAAGAGGCCCCCCCGGCCCTGGAGGACCAC
CAGGCCCAGGGGTACCTCCCGGCCCAAGAGGGCCACCCGGTCCCGGAGGA
CCACCAGGTCCACGAGGAGGATTGTCTGGCCCAGGAGTACCACCCCGCGA
TTTTGACGACGATCGGTACGGCCCTCCACCCATTCAAGCACGGGGTCCTC
GAGGCCCGCCCCCGAAAAATGTCCCAATAGACCATGCTGGCGCGCACAAC
ACGCGGATGATTAGGGGAGATCGTCCGATGCCGCAAGATCGACCCCCTCA
CGTCGGTGGTGTAAGGTACTCCCGTCCTCAGGATGGTCCGCCTCACGAAG
GCCCCCCGCCCGACGGACCTATGTTCGATGCACCCCACCACGTGCGAGAT
GTAGACTATCATGGCGGTAGAGGGCGTGAGGGTGGCGGCCCCTCAACCCG
CCATGTGCGAGGTGGACCCGACTCAAGAGGCCCCCCCGGCCCTGGAGGAC
CACCAGGCCCAGGGGTACCTCCCGGCCCAAGAGGGCCACCCGGTCCCGGA
GGACCACCAGGTCCACGAGGAGGATTGTCTGGCCCAGGAGTACCACCC
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