mRNA_F-serratus_M_contig82.19614.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig82.19614.1
Unique NamemRNA_F-serratus_M_contig82.19614.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig82.19614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig82contigF-serratus_M_contig82:882914..890030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size839
Cds size579
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932440.4350066-UTR-F-serratus_M_contig82:882913..8830181622932440.4350066-UTR-F-serratus_M_contig82:882913..883018Fucus serratus maleUTRF-serratus_M_contig82 882914..883018 +
1690964309.997983-UTR-F-serratus_M_contig82:882913..8830181690964309.997983-UTR-F-serratus_M_contig82:882913..883018Fucus serratus maleUTRF-serratus_M_contig82 882914..883018 +
1622932440.450135-UTR-F-serratus_M_contig82:887132..8871331622932440.450135-UTR-F-serratus_M_contig82:887132..887133Fucus serratus maleUTRF-serratus_M_contig82 887133..887133 +
1690964310.0091412-UTR-F-serratus_M_contig82:887132..8871331690964310.0091412-UTR-F-serratus_M_contig82:887132..887133Fucus serratus maleUTRF-serratus_M_contig82 887133..887133 +
1622932440.5655205-UTR-F-serratus_M_contig82:889876..8900301622932440.5655205-UTR-F-serratus_M_contig82:889876..890030Fucus serratus maleUTRF-serratus_M_contig82 889877..890030 +
1690964310.062283-UTR-F-serratus_M_contig82:889876..8900301690964310.062283-UTR-F-serratus_M_contig82:889876..890030Fucus serratus maleUTRF-serratus_M_contig82 889877..890030 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932440.4699218-CDS-F-serratus_M_contig82:887133..8872211622932440.4699218-CDS-F-serratus_M_contig82:887133..887221Fucus serratus maleCDSF-serratus_M_contig82 887134..887221 +
1690964310.0194056-CDS-F-serratus_M_contig82:887133..8872211690964310.0194056-CDS-F-serratus_M_contig82:887133..887221Fucus serratus maleCDSF-serratus_M_contig82 887134..887221 +
1622932440.4841797-CDS-F-serratus_M_contig82:887531..8876331622932440.4841797-CDS-F-serratus_M_contig82:887531..887633Fucus serratus maleCDSF-serratus_M_contig82 887532..887633 +
1690964310.0297973-CDS-F-serratus_M_contig82:887531..8876331690964310.0297973-CDS-F-serratus_M_contig82:887531..887633Fucus serratus maleCDSF-serratus_M_contig82 887532..887633 +
1622932440.4998903-CDS-F-serratus_M_contig82:888936..8890161622932440.4998903-CDS-F-serratus_M_contig82:888936..889016Fucus serratus maleCDSF-serratus_M_contig82 888937..889016 +
1690964310.0406208-CDS-F-serratus_M_contig82:888936..8890161690964310.0406208-CDS-F-serratus_M_contig82:888936..889016Fucus serratus maleCDSF-serratus_M_contig82 888937..889016 +
1622932440.5197043-CDS-F-serratus_M_contig82:889567..8898761622932440.5197043-CDS-F-serratus_M_contig82:889567..889876Fucus serratus maleCDSF-serratus_M_contig82 889568..889876 +
1690964310.0507112-CDS-F-serratus_M_contig82:889567..8898761690964310.0507112-CDS-F-serratus_M_contig82:889567..889876Fucus serratus maleCDSF-serratus_M_contig82 889568..889876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig82.19614.1prot_F-serratus_M_contig82.19614.1Fucus serratus malepolypeptideF-serratus_M_contig82 887134..889876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig82.19614.1

>prot_F-serratus_M_contig82.19614.1 ID=prot_F-serratus_M_contig82.19614.1|Name=mRNA_F-serratus_M_contig82.19614.1|organism=Fucus serratus male|type=polypeptide|length=193bp
MELLFMCNNASPNTPRPGVNEALSTNHTTEASRVVPINHFPMTSAETASA
STNGIFAISPSGTRPDCFRHYEYLMAGNIVYVPDDPSLRLVLAGLPVVFV
NGIEEGWGNITCEAMAEQARHVAQRLHDGLRQGAPPAFNYAKLMLPYWSR
FVRDVVWQAAADLQLNPDEDNLAATSVRNSNNYPADMTVGSP*
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mRNA from alignment at F-serratus_M_contig82:882914..890030+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig82.19614.1 ID=mRNA_F-serratus_M_contig82.19614.1|Name=mRNA_F-serratus_M_contig82.19614.1|organism=Fucus serratus male|type=mRNA|length=7117bp|location=Sequence derived from alignment at F-serratus_M_contig82:882914..890030+ (Fucus serratus male)
TGGCTTTGGTGGAACGAGCCTCACAAATAGGCTTCCGCTAGCGGAGTTCT
TGAACTATTCGGCGGAGAAGTTGCGTCGTTTGGAGTCCTGCCCATCTGGA
GAGAAGTGAGTGGTCAAGTTCCATTCATACTTGCTCTGTCTGTCTTACCG
CTTGTACCGATAAGTACAATGTGCTAGTTATGTATGTATGCATGGTAACA
CATACATACAGCAAGAGTATGGATCAACCGGGTAAGGTTGCCAATCCTGC
TTGTTCGAGTAGGCGCTTCCACAGTACCTACTGCGTTACTCATAGGGGGA
CAGAATTATAATCCCCTGTGGTTTAGACGCGTGCCTCGTTAGTGTTATAT
TCTATACTCTACTTTGTGTCTGGGTGGTATATGGGTATGGCGAAGTCCGG
AGCACGCTAAGCGAGCGACCGGGACTATAATAATGAAAGATATGTATTGA
ACCCATGCCGGGCTGTGCGCCCGACCCCATCAAGGCGTCGCATATACGAA
CACGCTTAGCGGCGAAGGAATTGAAGTAAAACGTCTGTTGATGGAGAGGT
AGAGCTGGGAAGAAGAGAGAAGATAACCGCCGGACAAGAGCGAAGAGCGT
AGAAGAGCGGGAATTCCGCTGAAGAGAGAAGATAACCGCCGGAGAAGAGC
GAAGAGCGTAGAAGATTCCGCTGGAGAGTTTGAAACACCGCTGGAGAGAG
CGAAGAGCGGGTAGCCCGCTGGGAAGTATTGAAGAACATCGCCAGAGGAG
CGAACAGAGCGAAGACGGAGAGATACATTTTTATAGGATTGACGGAACTG
GGCGCTGGAACCGGAGCTGGCGCGAGGAGTCCGCCGAGGGAGAAAGATCA
GGAGTGGATGCGACGTCGAGACGCGTGAGACCCCTCCTGTGCACCAAGAA
TAAAGTAAGCGATGGCTTCTTATGATGACATGAAAAGAATGGGGTACACG
ACGGTCAAAGAAATATCTGATGCCCTTCGTCCTGCCTTAGACGCACTGAA
AGACTACTATAATCAAGACGCGATACTTGGCATCATGTTCGAGACTGATG
AAGACCGAACGCGTCGGCAGAAATTAATTGAGGTAAACCAAGTTGTTGAT
GCTCATCGCCTGAATAAGATGAAGGCTTTCATCGAACAACACAAGATTAC
GACGTGGCGTAGGGAAAACGGTTTTGCTTTTGATCTCCAGCCAGTAGTAC
GCGGCAAGCCTCCCTCAACGCGTGAGGAGGACAACGCGAGGCTACGGTTC
CAAGTACAGGAGTTGAGAGACACGATTTCATCGCCTACAAAATACCCCAA
TTTACGTTCAGAATCGACTACTGTCTTGAAGGAACGAGTCGAGCCAAATC
TCGTCGCGACCGAACAACAGTGTCTCGATGCACCGTCAGACTCATGTATT
ATTTTGGAGGAAGAGGTAAATGTAAACGGGAGCCCATGCATGGATCAGGG
GAAATTTTTTATTTCACAAATCGAAGGAGGAACAACTGCGGAGAGCGAGA
ATTCGGGGGAAAACTGGGTACAAGCGGACACCACAGCAGTACGAGTTGCT
GCGGAGAGCGAGAATTCGGGGGAAAACTGGGTCCAAGCAGACATCACGCA
AGACACAACTACAGCAGTACGAGTTGCCACTCGCATGGTGACTGCGATTG
ACCAACACGGGCAAGGAACGATGACGAGCGATGAGAACGAGCAATTCGAT
CCAGGGGGAGGACGAAAGACTTTTCCTTTCCCGATGGGAACTGCCTCGCC
ACGGCCTATTCTGTTTTTTCCCCGTGCTTGGTATTTCTTTGTTTTCTCTG
TTTGTGTTTTCTGGCTTGTATTTTTGCCTGTCCGCAATTCTAATTTTTCC
CTATCAGGTGCTCAACGAAATCAACCAGCTGATATGAGCAGCGATGTGAG
CTTTGGCCTTCAACCTTATGAAGATCGCGACATCACTACTGTTTCTGGTC
TGATCGGTCGCATGCAGTAGAGCAAGGGGGACTCAGGGGTAGCTTTTGCC
TACATCTATTTCTTTGGTACTACAGTCAATGTGTACTGATGTTTTTTTTT
CTTTGTTGATTCAAGTAGGTTACACTGAAACCGATATTAACTGCCTTGTA
CTCGACTCAGAGCGTGGGTGCTAAAATGAGTATAATAAAATGAAAAACTT
ATTCCCGACGTTGTACCTGGAGCGCGGGGGCAATTCAAATGCTCATCGCA
AGTTGAGGCTAGGCCATTAGATTTTTTCATTGAGTACAGTAGAGCCTTGG
AAAAACGGCTGAGCTACTATCGACCCAGCATGCAAGCCGTATACTCGTCC
TGTCACCGACGTGCAAGTTGTCTGTATCGAAAATTGAATTTCTCTTTGGG
AACACGTTCAACTCGCGAGTACCACAATACGTTGACTCGTCAGTTTCTTT
TGAATTCTCAAAATATTGTTCAGTGGGACGGCTGACTCTCTGAAGTATTG
TATTGGAGAACATGTACGCCCCTGGTTCAACCCCCTAGGGCGTCAAGTTT
TTACTTTTTAATGTCGGAAATGCTTTGGTATAATATATCGAGTCGTAGTT
CAACAATCGAGTGTTCGATCCCCAGTGTCGACAACTAATAGATTTTTTAA
ATGTCGTAAGTACACGAGACTCTGAATAATATTTGCGTACGGCTTAAACA
TTAATGTCTCGAGTAAAGTATTGCAGGAATTGAAGGGGACGGATGTGAGT
CACTGTGATGCAGAACAATTCTGCATTCAATCTGAACTAGGTGAAGACTT
TTCTCTACGCATACCTCGTGTCATGCGCATCTCACCACATGCTTGGAGAA
ACTACACTTCCAGCAGTGTTTAGCAGATGCGTGCGTCTCCCGTTTGATTG
AGGGGGGGGCGTGTGGCAATCATAGCGGTAGCACATGTCGATGAGCAAGC
TTCCCGTTCGTGGCATGCGCATCTTACCACATGCTTGGAGAAACTACACT
GCCAGCAGTGTTTAGCAGATGCGTGCGTCTCCCGTTTGATTGAGGGGGGG
GCGTGTGGCAATCATAGCGGTAACACATGTCGATGAGCAAGTTTCCTGTT
CGTGGCATGCGCATCTTACCACATGCTTGGAGATGCGTACGTCCTCCGTT
TGGTTGAAGGGGGAGCGTGCAGAAACCTCGCGGTAGTACATGTTGTCCTC
GCGGACGCAGTAAATGAATTATTATGTTTGAGACAGGTTTGACGTTTTAC
GTTACCCAGTAAGGTCATGTCATGCTTTCCGGTTCTCGAAGACACGCTGC
ACAATTTGCACAGATTGACTTGTTTGCGTTCCACCGGAAATTCATCATGA
ATTTAGAATAAGACTCGCGTTGAAGGTTTGGTAAATGAAAAAGTTGAGTA
ATGTTTGATAAGTGAATTGAGCGACGAGTTTTCTCAGTACAGTAAGATTT
CTTGTGAATGATCTTTCGTAGCAGGGGGAATGTTTTGCTTGAATTTAGTC
CGGGTTCACGTTTCCAGAAATGACCATTAGACATGAGTAGGATACTGCCG
TCATCGGGGGGAATGTTCGAGTAGGCGCTTCCACAGTACCTACTGCGTTA
CTCATAGGGGGACAGAATTATAATCCCCTGTGGTTTAGACGCGTGCCTCG
TTAGTGTTATATTCTATACTCTACTTTGTGTCTGGGTGGTATATGGGTAT
GGCGAAGTCCGGAGCACGCTAAGCGAGCGACCGGGACTATAATAATGAAA
GATATGTATTGAACCCATACAGGGCTGTGCGCCCGACCCCATCAAGACGT
CGCATATACGAACACTGCTCATTGTAATGGTCACCTGAACAGGAAAAATG
AAAATTCCGCTGTCCACGTTCGCGCCTGAAAATTTGGTTTCGCGAGACGG
GTTCGACAGTCCCATCCCGCAGCCTGTTCATTCTCCATACTCACGCTGAA
TCTGGTGCTTACTTACTTGCTTACGGGATTCCTCCTATAGTAGGACAGGT
CACTATTATGATTAATGGTACTCGTATAGTGTACCAAGATTGGATAGTTA
ATACTCTAGGGTTTTAAAGGGGTTTGGAAGGGGTGAGCGCTGTTTTGGCG
TTCGTTTCTAAACATCGGTCATTTTTAACACTACGGCGATACTGTATCAT
ACCTCACCCGTCTTTAACGTTTCATTTGTTATTGGTAAGAGAAATGCCGT
TGGCAATTTCATTCGCGGGATTGGTTCGTCACCTGTGCGTGTACTGTACA
AACGTGTTGGCTCTGGCAGGATGGAATTGCTCTTCATGTGCAACAACGCC
TCTCCCAACACTCCACGGCCCGGCGTCAATGAGGCCTTGAGCACGAACCA
CACTACTGGTGAGGTACTCCTAAAGGTACTGTATATAATATTCATATTCT
GCTATTTTGTACGAAGGGTGTGCGTTCTGTTTATATGAATATTAATAGGT
GTTAAACGTTTCTCGCGGCTCGTAATTCGAAAGCCCCTTGCCCGCAACAA
CAAATAAACTCGAGTGCATAAATGATGCCGCTCAAGAACTACTTGTTCAG
AGTTCACTTTAAGTGTCGCGAGAATCCAGAGCGGTTATGGTTGTTGTGAT
TCCTTCCTGGTTCTTCCCTCCAACGGCGTGTTCATTTTCAACCGCTTGTC
GATTTGCCAACCGCGCAGAAGCTTCCCGAGTCGTGCCCATCAATCACTTC
CCGATGACCTCCGCCGAGACAGCGTCAGCCAGCACCAATGGCATCTTCGC
CATAAGTCCCTCCGGAACACGTGAGAAAATCTCTCAATAGAGCTACAAGT
GTTTGTATAGAGTTTTCAGCCTTTGGCCGAAGGGAGCATTTTTTGCTTTG
ACTTCATTGATTTATTGCGCAGCCGTGTATATTGCTGGACCGTCGGACGC
CCTTTTTGGAGAATGATTTTATGTCAAAAGCTCTCACAATCACTGGTAGA
AAAGTTGTGATGTAGAGCTTGACAATCAATTTTTGAATAAATTTTTACGT
GTAGGCTAATCCATGGCGGAATTGCAAGCCATTTACAATTATCACCAATT
GTATACTGTTAATATTAACATGAACATGGATATGCCCCCACCATATTTTG
CAACTACTACTATAGCGAATTACAGTAGACTGATTGCTATAGATAGTCTC
GCTTGGGCTTCACTGAGGCAAAAGCACAGGAACTGGCATAGAGTTTGAGC
TGTATTAAGACTGGTGAAAAACACACAAAAAACAAGACAAATATTTCGCA
GCGTCCTTCAACTGTACAGCACAGTACTGCTTGATATTTACACTACAGCA
GTATCACTACTGTACTGTACACCGATTCACCTTCCTTTTTATATTTTCCT
TGCTTCTATCTTGTATTTGGTGCTCTCGTTGGAGCACTGTACATGTCCCT
CTGATCTTTTCCTGTCCAGCAGACCACGTTAAGTACCGGATTGGCAACCG
CGTTCATTACAGTACTTACTCTGCCTATACCTTCAACATGCTATAATCAC
TTCATACCAATACCATTATTAGTATAGTAGGTGTGGGAAAAGAGAGGCGC
ACATTAATTGGTCCATGGTGGCCTGCAAAATGGCATCACCCGTTACTGAA
ACTACCTTGAGGACTATCGGCCCTGTGTCGGCGGATTCTCGGCAGTGAAC
GTCATTGGTACGCAATAGCGTAACCCGATTAACTCGGGACTGACCCGATA
GCGTATGGCGTATGGCGGTCTAAATAAATAAATGGACACCGCGCCGAAAT
CGGGAGGAATCCCGTGAGTAAGCACCAGATCCAGCCTGCTGAGTATGGAG
AATGAACAGGCTGACGCGGTACGGGGCGGCTGAAGCCGTCTCGCGAGACC
AAATTCTCAGGCGCATACGGGGAGAGGGGATTGTTAATTTCTTCTGTTCA
GCTGACCACGAGCAGGATTGGCAACCTTGCCCGTTTGATCCATACTCTGC
TATATGTGATGACCATACATGTATACATGCTCACTGGGTGAGGCTCGATC
AGTTAATGCAAAGAACACTCACACACACGCTGACGCTGAGTTACCGGTCA
TTGGTTCTACCTCGCTCGTGCAGGTCCAGACTGCTTCCGTCATTACGAGT
ACCTGATGGCTGGTAACATCGTTTACGTTCCTGATGACCCCAGCTTGCGC
CTCGTGAGTCGATTCGTACCTGTAGATCTTGATGCTGTAGCAGCTCGTAA
CTCGCACGCATCGCGTTTACCTTGTGGTTAAGACTGTTTTGGGGGGGGAG
GGGTTAGGTTGGACATCTAGGATGCTTGAATACTCTAAATTGTACGGAAA
TACAAGTAAACGATAGAGTGTTTGAGGGAGTTACTAAATGTCGTGTGATT
CGTTTATTTATTTGGTCTATGCATCTATTAATAGTGAACGAAGTGTAATT
TATTTTACTCGGTATGATAGGCATCCTCGAAAAAGGTTCATGTGGGCATG
AAGGGAGTACTGTATAGGAATGTTGATATTGCAAGCAAAGAATAAGGGTA
AACATGGCAATATGGACGGCGTTACAATACGTTGCGATTGTAAAGCAAAA
CATAACGGGCCACTGTCCAGCAGCACTGACTATGACAACCCTGCCCTCAT
GCCCCTCAAAACTCATGTATTTCTACGAGTCGCCCAAGTACATGATGAAT
GTACTTGGTTTTCCCTGGGGACTGACTCCATTTCTTCCTCCTCGCGTGGA
ACAGGTACTTGCCGGATTACCGGTGGTTTTCGTTAATGGTATCGAGGAAG
GATGGGGCAACATCACGTGCGAAGCCATGGCCGAACAAGCTCGACACGTG
GCTCAGCGACTACACGATGGGCTTCGCCAGGGAGCCCCGCCGGCCTTCAA
CTACGCTAAGCTGATGCTTCCCTATTGGAGCCGGTTCGTTCGAGACGTGG
TTTGGCAAGCCGCGGCAGATCTTCAACTCAATCCGGATGAGGATAACCTT
GCCGCAACCTCAGTTCGAAACTCGAACAACTATCCTGCCGACATGACCGT
AGGTTCACCTTGAATTATTTCCAGAACTTGTGAAGCAGGACGTACTTTCC
TTTTTTTAATTCGAGGCGAGCCTGAGCGTCCCACCCATTTTTTTTTTTGA
GTGTTAAGCAGCGCCGACTTCAGCCATATCTTACAAAGTGTGCGTGCATC
CTGTCTGGATATCAGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig82:882914..890030+

>mRNA_F-serratus_M_contig82.19614.1 ID=mRNA_F-serratus_M_contig82.19614.1|Name=mRNA_F-serratus_M_contig82.19614.1|organism=Fucus serratus male|type=CDS|length=1158bp|location=Sequence derived from alignment at F-serratus_M_contig82:882914..890030+ (Fucus serratus male)
ATGGAATTGCTCTTCATGTGCAACAACGCCTCTCCCAACACTCCACGGCC
CGGCGTCAATGAGGCCTTGAGCACGAACCACACTACTGATGGAATTGCTC
TTCATGTGCAACAACGCCTCTCCCAACACTCCACGGCCCGGCGTCAATGA
GGCCTTGAGCACGAACCACACTACTGAAGCTTCCCGAGTCGTGCCCATCA
ATCACTTCCCGATGACCTCCGCCGAGACAGCGTCAGCCAGCACCAATGGC
ATCTTCGCCATAAGTCCCTCCGGAACACAAGCTTCCCGAGTCGTGCCCAT
CAATCACTTCCCGATGACCTCCGCCGAGACAGCGTCAGCCAGCACCAATG
GCATCTTCGCCATAAGTCCCTCCGGAACACGTCCAGACTGCTTCCGTCAT
TACGAGTACCTGATGGCTGGTAACATCGTTTACGTTCCTGATGACCCCAG
CTTGCGCCTCGTCCAGACTGCTTCCGTCATTACGAGTACCTGATGGCTGG
TAACATCGTTTACGTTCCTGATGACCCCAGCTTGCGCCTCGTACTTGCCG
GATTACCGGTGGTTTTCGTTAATGGTATCGAGGAAGGATGGGGCAACATC
ACGTGCGAAGCCATGGCCGAACAAGCTCGACACGTGGCTCAGCGACTACA
CGATGGGCTTCGCCAGGGAGCCCCGCCGGCCTTCAACTACGCTAAGCTGA
TGCTTCCCTATTGGAGCCGGTTCGTTCGAGACGTGGTTTGGCAAGCCGCG
GCAGATCTTCAACTCAATCCGGATGAGGATAACCTTGCCGCAACCTCAGT
TCGAAACTCGAACAACTATCCTGCCGACATGACCGTAGGTTCACCTTGAG
TACTTGCCGGATTACCGGTGGTTTTCGTTAATGGTATCGAGGAAGGATGG
GGCAACATCACGTGCGAAGCCATGGCCGAACAAGCTCGACACGTGGCTCA
GCGACTACACGATGGGCTTCGCCAGGGAGCCCCGCCGGCCTTCAACTACG
CTAAGCTGATGCTTCCCTATTGGAGCCGGTTCGTTCGAGACGTGGTTTGG
CAAGCCGCGGCAGATCTTCAACTCAATCCGGATGAGGATAACCTTGCCGC
AACCTCAGTTCGAAACTCGAACAACTATCCTGCCGACATGACCGTAGGTT
CACCTTGA
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