mRNA_F-serratus_M_contig82.19613.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig82.19613.1
Unique NamemRNA_F-serratus_M_contig82.19613.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig82.19613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig82contigF-serratus_M_contig82:833239..835770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1503
Cds size960
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig82.19613.1prot_F-serratus_M_contig82.19613.1Fucus serratus malepolypeptideF-serratus_M_contig82 833239..834198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932440.7227442-CDS-F-serratus_M_contig82:833238..8341981622932440.7227442-CDS-F-serratus_M_contig82:833238..834198Fucus serratus maleCDSF-serratus_M_contig82 833239..834198 +
1690964310.1096253-CDS-F-serratus_M_contig82:833238..8341981690964310.1096253-CDS-F-serratus_M_contig82:833238..834198Fucus serratus maleCDSF-serratus_M_contig82 833239..834198 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932440.7717397-UTR-F-serratus_M_contig82:834198..8343871622932440.7717397-UTR-F-serratus_M_contig82:834198..834387Fucus serratus maleUTRF-serratus_M_contig82 834199..834387 +
1690964310.1217966-UTR-F-serratus_M_contig82:834198..8343871690964310.1217966-UTR-F-serratus_M_contig82:834198..834387Fucus serratus maleUTRF-serratus_M_contig82 834199..834387 +
1622932440.7904844-UTR-F-serratus_M_contig82:835417..8357701622932440.7904844-UTR-F-serratus_M_contig82:835417..835770Fucus serratus maleUTRF-serratus_M_contig82 835418..835770 +
1690964310.132673-UTR-F-serratus_M_contig82:835417..8357701690964310.132673-UTR-F-serratus_M_contig82:835417..835770Fucus serratus maleUTRF-serratus_M_contig82 835418..835770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig82.19613.1

>prot_F-serratus_M_contig82.19613.1 ID=prot_F-serratus_M_contig82.19613.1|Name=mRNA_F-serratus_M_contig82.19613.1|organism=Fucus serratus male|type=polypeptide|length=320bp
QTLALAKKEHQRALHPLLQRSEAISSSAVAARRELEELTRAVHETTTRCQ
ILEGQQQATDKDIPASEHEYAAFIAQLTAQGGLRRPHSDATPAVPQPRAP
STSAVPTAPTASQRRHPLASAPTTLATSVAPTYRNPLAPATATIPTASTA
LPQRPAPAGAAIPSAPTAPAVTFATQTAMPPPPSTIPWSVVTARPRRQAR
PQLPSAAPNVDDSLLDLRISKLMFKNLRFPSDLRSLIEELATKVNMALAY
LPWRRPCLRVALRVATQDYTPFSNRIVGDILHLCDLLGRYYTSTDGALDS
GHSPGRRCITPPCPNCFFK*
back to top

mRNA from alignment at F-serratus_M_contig82:833239..835770+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig82.19613.1 ID=mRNA_F-serratus_M_contig82.19613.1|Name=mRNA_F-serratus_M_contig82.19613.1|organism=Fucus serratus male|type=mRNA|length=2532bp|location=Sequence derived from alignment at F-serratus_M_contig82:833239..835770+ (Fucus serratus male)
CAAACGCTGGCCCTTGCTAAGAAGGAGCACCAGCGCGCCCTCCACCCTCT
CCTACAAAGGTCCGAGGCCATCTCCTCTTCGGCCGTCGCTGCCCGCCGCG
AGCTGGAGGAGCTCACACGCGCTGTCCACGAAACGACTACCCGCTGCCAG
ATCCTCGAGGGCCAGCAGCAAGCTACGGACAAGGACATCCCGGCATCCGA
GCATGAGTACGCGGCGTTTATCGCCCAACTCACCGCTCAGGGAGGCCTCC
GACGACCGCATTCGGACGCGACCCCGGCCGTACCACAGCCCCGGGCCCCG
TCCACCTCGGCGGTTCCCACCGCCCCCACTGCGTCGCAGCGGCGGCACCC
ATTGGCCTCCGCGCCAACCACCCTCGCAACCTCCGTCGCCCCTACGTACC
GGAACCCCCTGGCTCCGGCCACAGCGACGATCCCCACCGCCTCCACTGCG
CTGCCGCAGCGACCGGCGCCGGCTGGCGCCGCCATTCCCTCGGCCCCCAC
TGCGCCCGCGGTTACTTTCGCCACCCAGACCGCCATGCCGCCACCACCCT
CCACCATACCGTGGTCGGTCGTCACAGCACGACCTCGGCGACAGGCCCGT
CCCCAACTACCCTCCGCCGCCCCGAACGTCGACGATTCATTGCTCGACCT
TCGTATCTCGAAGTTAATGTTCAAGAACCTCCGGTTCCCCTCAGACCTTC
GCTCCCTCATTGAGGAGCTTGCGACGAAGGTCAACATGGCCTTGGCATAC
CTCCCCTGGAGAAGACCTTGTCTACGCGTAGCCCTCCGAGTGGCGACCCA
AGACTACACCCCCTTCTCGAATAGAATTGTGGGCGATATCCTTCACCTTT
GCGACCTTCTGGGCAGATACTATACCTCCACGGACGGCGCGTTGGATTCA
GGACACTCTCCGGGACGCCGCTGCATCACGCCGCCCTGCCCGAACTGCTT
CTTCAAGTAGCGATTCCACCGCACACCGCCCTGCTCGGACTGCCTCTACA
AGTAGCGACTCCACCGCCCCAGGACAGCGCCGCCGGGAGGACTCTTCAAG
CGACCGTGGAAACTCGAAACGGGCCACTCTCTCCGGGACCTTGGATAGCG
ACCACCACCCGCCTCCCCGACGCACGGGTCAAGATCAACGGTCTCACAGG
CAAGTACCCCCGCGCACATGTCACGCTGTACAGCGCGATACTAGTAACGC
GCCACCCCCCTTCCAGCATATAGTTGACGCGATCACCGCCGCGACAATAG
CCGCAGTCGATCGCCACCTCGCTCACGTGGGCCTCTACCCGCGGCCTGAA
CCTGCTTCATCACTTGATACAGTAAACCCAAATCGCCCTTACGTGATCCC
AGCCCCCGTAGCAACATCCCCTCCGCCGGCGGGTGCAGTGGCCCCATCTA
CTCACCCCTCCCCCCCCTTACAGAACACCCTCATGGCCCCTGCCCTTGCA
GCAACGCCCCCACCATCGATCGCCCCTGTAGTACCGCTCCCCCCGCTGAC
GGGTGTTGTGCCCCCCCCCACTCACCCCTCCGCGCCCTTACAGTACACCC
TCGCGGGCCCCACCCCTGTGGCAACGCCTCCACCGTTGACGGTTCTCACG
GCCTTTACCACTTGCCCCGTCACGGTCCCTACGAATTATGTCCCCCCCTT
GTGGCTCCCGCGCCTGTTTTAGTTCCTTTACCGCCCGGAGACTTCGTAGC
CCCCACCACGAATCCCCCCGGTCCCTTCGAGAATTACCCGCCCCCACGCG
ACCTCGTTCGCACCTATCGTAGATGGCCCCCCGGCTGCGGCCCCCATAGA
CGAGCGTATCCTATACGACGATAGCTCGTCCCAGGTCTCGCACCCATCGA
GCTCCCTGGGCCCCCGCCCGGCTTTCGTCGCGAGCATTCAAGCAGGGTAC
CGCACTCTTGACATGCGCCGAGTCCCACGCGTCCAACCGCTGCAGTTACC
CCCCTCCGCGGATCGGACTGCCGAAACCCAATTGTTGATTTGCTCCATGC
GTGATGCCCTCTCCGGGATTTTTGACGACCCCACTGGGACGGTAACTATG
AACTCACCCGTTTGGGTCCCTGGGTGGCACGCGCCCCTCCTCAAGCTAAT
CAAGCCCGCGATAAACACTAACCGTGATGACACTCACGACCTGCATCTCC
TCGTTGACGACCTGTTCTCGCAACTCCAGGACCGGATAAGCTCGGGCTCC
AGTGGACCTGACGCGTTCGGGACACTACTGGCCGATTTTGCTGACTTCTT
TGATCGAGCGCCGCGCGGAGCTGCGCTCGAGACACTTCAGAAGTTTGGCG
TTCGTACCGGGACGCCCTTCTCCAGCTACTTACGAGCCCTTCGGGTTGTA
GTTACCAGTACCGTAGAGAAAAGCGGCCCCTTGGCATCATCCGCGGCGAT
GGCGATAGAACTAGTTAGGAAACGGACGGCTCACCAGTACCCCACGTTGA
TGCCGACCCAGTTCCCGGGCGGTTTAGTCACTAGAGAGAAACCGTATGTT
TCACTAGCTTCGATGTGGACCGCGTTTGCCGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig82:833239..835770+

>mRNA_F-serratus_M_contig82.19613.1 ID=mRNA_F-serratus_M_contig82.19613.1|Name=mRNA_F-serratus_M_contig82.19613.1|organism=Fucus serratus male|type=CDS|length=1920bp|location=Sequence derived from alignment at F-serratus_M_contig82:833239..835770+ (Fucus serratus male)
CAAACGCTGGCCCTTGCTAAGAAGGAGCACCAGCGCGCCCTCCACCCTCT
CCTACAAAGGTCCGAGGCCATCTCCTCTTCGGCCGTCGCTGCCCGCCGCG
AGCTGGAGGAGCTCACACGCGCTGTCCACGAAACGACTACCCGCTGCCAG
ATCCTCGAGGGCCAGCAGCAAGCTACGGACAAGGACATCCCGGCATCCGA
GCATGAGTACGCGGCGTTTATCGCCCAACTCACCGCTCAGGGAGGCCTCC
GACGACCGCATTCGGACGCGACCCCGGCCGTACCACAGCCCCGGGCCCCG
TCCACCTCGGCGGTTCCCACCGCCCCCACTGCGTCGCAGCGGCGGCACCC
ATTGGCCTCCGCGCCAACCACCCTCGCAACCTCCGTCGCCCCTACGTACC
GGAACCCCCTGGCTCCGGCCACAGCGACGATCCCCACCGCCTCCACTGCG
CTGCCGCAGCGACCGGCGCCGGCTGGCGCCGCCATTCCCTCGGCCCCCAC
TGCGCCCGCGGTTACTTTCGCCACCCAGACCGCCATGCCGCCACCACCCT
CCACCATACCGTGGTCGGTCGTCACAGCACGACCTCGGCGACAGGCCCGT
CCCCAACTACCCTCCGCCGCCCCGAACGTCGACGATTCATTGCTCGACCT
TCGTATCTCGAAGTTAATGTTCAAGAACCTCCGGTTCCCCTCAGACCTTC
GCTCCCTCATTGAGGAGCTTGCGACGAAGGTCAACATGGCCTTGGCATAC
CTCCCCTGGAGAAGACCTTGTCTACGCGTAGCCCTCCGAGTGGCGACCCA
AGACTACACCCCCTTCTCGAATAGAATTGTGGGCGATATCCTTCACCTTT
GCGACCTTCTGGGCAGATACTATACCTCCACGGACGGCGCGTTGGATTCA
GGACACTCTCCGGGACGCCGCTGCATCACGCCGCCCTGCCCGAACTGCTT
CTTCAAGTAGCAAACGCTGGCCCTTGCTAAGAAGGAGCACCAGCGCGCCC
TCCACCCTCTCCTACAAAGGTCCGAGGCCATCTCCTCTTCGGCCGTCGCT
GCCCGCCGCGAGCTGGAGGAGCTCACACGCGCTGTCCACGAAACGACTAC
CCGCTGCCAGATCCTCGAGGGCCAGCAGCAAGCTACGGACAAGGACATCC
CGGCATCCGAGCATGAGTACGCGGCGTTTATCGCCCAACTCACCGCTCAG
GGAGGCCTCCGACGACCGCATTCGGACGCGACCCCGGCCGTACCACAGCC
CCGGGCCCCGTCCACCTCGGCGGTTCCCACCGCCCCCACTGCGTCGCAGC
GGCGGCACCCATTGGCCTCCGCGCCAACCACCCTCGCAACCTCCGTCGCC
CCTACGTACCGGAACCCCCTGGCTCCGGCCACAGCGACGATCCCCACCGC
CTCCACTGCGCTGCCGCAGCGACCGGCGCCGGCTGGCGCCGCCATTCCCT
CGGCCCCCACTGCGCCCGCGGTTACTTTCGCCACCCAGACCGCCATGCCG
CCACCACCCTCCACCATACCGTGGTCGGTCGTCACAGCACGACCTCGGCG
ACAGGCCCGTCCCCAACTACCCTCCGCCGCCCCGAACGTCGACGATTCAT
TGCTCGACCTTCGTATCTCGAAGTTAATGTTCAAGAACCTCCGGTTCCCC
TCAGACCTTCGCTCCCTCATTGAGGAGCTTGCGACGAAGGTCAACATGGC
CTTGGCATACCTCCCCTGGAGAAGACCTTGTCTACGCGTAGCCCTCCGAG
TGGCGACCCAAGACTACACCCCCTTCTCGAATAGAATTGTGGGCGATATC
CTTCACCTTTGCGACCTTCTGGGCAGATACTATACCTCCACGGACGGCGC
GTTGGATTCAGGACACTCTCCGGGACGCCGCTGCATCACGCCGCCCTGCC
CGAACTGCTTCTTCAAGTAG
back to top