mRNA_F-serratus_M_contig8191.19607.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8191.19607.1
Unique NamemRNA_F-serratus_M_contig8191.19607.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig8191.19607.1 vs. uniprot
Match: D7FXK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK2_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 3.050e-63
Identity = 117/191 (61.26%), Postives = 134/191 (70.16%), Query Frame = 1 
Query:    1 AKRPGQATKAEGA-LYPGGSAASGWNTFFWSRRRDWEQAFTSLYHGLLAGRREGACTDRARDRGGGEG-----------------------FYLQCPRFTVLWKLVRDRGPSCGGDSEGSSVR-LIPVAAMTQSTRRLRKRLTAAGIEFRMPLDPAGDQRDAKADEDVLEEWKAMNVTGNAKPGAVYANEE 498
            AK P  ATKA+ +   PGGSAASGW +FFWSRRRDWEQAF SLY+GL++           R+RGGGEG                       FYLQCP +TV+W LVR+RG   G + +G+  R L+P A MT+STRRLRKRLTAAGIEF MPLDPAGDQRDA+ADEDVLEEWKAM+ TGNAKPGAVYANEE
Sbjct:  373 AKSPAHATKAQDSGARPGGSAASGWTSFFWSRRRDWEQAFGSLYYGLIS-----------RNRGGGEGARGGRXXXXXXXXXXXXXXXXXXFYLQCPLYTVVWTLVRERG---GAEDDGTRRRRLVPAALMTRSTRRLRKRLTAAGIEFGMPLDPAGDQRDAQADEDVLEEWKAMDATGNAKPGAVYANEE 549
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BLAST of mRNA_F-serratus_M_contig8191.19607.1 vs. uniprot
Match: A0A6H5K212_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K212_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 4.860e-62
Identity = 118/181 (65.19%), Postives = 133/181 (73.48%), Query Frame = 1 
Query:    1 AKRPGQATKAEGA-LYPGGSAASGWNTFFWSRRRDWEQAFTSLYHGLLAGRREGACTDR-----------ARDRGGGEGFYLQCPRFTVLWKLVRDRGPSCGGDSEGSSVRLIPVAAMTQSTRRLRKRLTAAGIEFRMPLDPAGDQRDAKA---DEDVLEEWKAMNVTGNAKPGAVYANEE 498
            AK P  ATKA+ +   PGGSAASGW +FFWSRRRDWEQAF SLY+GL++  R G    R           A     GEGFYLQCP +TV W+LVR+RG   G + EG+  RL+P A MT+STRRLRKRLTAAGIEF MPLDPAGDQRDA+A   DEDVLEEWKAM+ TGNAKPGAVYANEE
Sbjct:  679 AKSPAHATKAQDSGARPGGSAASGWTSFFWSRRRDWEQAFGSLYYGLISRNRGGGEGARGXXXXXXXXXAAEGEREGEGFYLQCPLYTVAWRLVRERG---GAEDEGT--RLVPAAVMTRSTRRLRKRLTAAGIEFGMPLDPAGDQRDAQASHADEDVLEEWKAMDATGNAKPGAVYANEE 854
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8191.19607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXK2_ECTSI3.050e-6361.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K212_9PHAE4.860e-6265.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8191contigF-serratus_M_contig8191:8143..9668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size499
Cds size498
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8191.19607.1prot_F-serratus_M_contig8191.19607.1Fucus serratus malepolypeptideF-serratus_M_contig8191 8143..9668 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932440.2651758-CDS-F-serratus_M_contig8191:8142..82101622932440.2651758-CDS-F-serratus_M_contig8191:8142..8210Fucus serratus maleCDSF-serratus_M_contig8191 8143..8210 +
1690964309.9061217-CDS-F-serratus_M_contig8191:8142..82101690964309.9061217-CDS-F-serratus_M_contig8191:8142..8210Fucus serratus maleCDSF-serratus_M_contig8191 8143..8210 +
1622932440.2828634-CDS-F-serratus_M_contig8191:8580..88081622932440.2828634-CDS-F-serratus_M_contig8191:8580..8808Fucus serratus maleCDSF-serratus_M_contig8191 8581..8808 +
1690964309.9282706-CDS-F-serratus_M_contig8191:8580..88081690964309.9282706-CDS-F-serratus_M_contig8191:8580..8808Fucus serratus maleCDSF-serratus_M_contig8191 8581..8808 +
1622932440.299663-CDS-F-serratus_M_contig8191:9074..91921622932440.299663-CDS-F-serratus_M_contig8191:9074..9192Fucus serratus maleCDSF-serratus_M_contig8191 9075..9192 +
1690964309.9500737-CDS-F-serratus_M_contig8191:9074..91921690964309.9500737-CDS-F-serratus_M_contig8191:9074..9192Fucus serratus maleCDSF-serratus_M_contig8191 9075..9192 +
1622932440.3226771-CDS-F-serratus_M_contig8191:9584..96681622932440.3226771-CDS-F-serratus_M_contig8191:9584..9668Fucus serratus maleCDSF-serratus_M_contig8191 9585..9668 +
1690964309.9643843-CDS-F-serratus_M_contig8191:9584..96681690964309.9643843-CDS-F-serratus_M_contig8191:9584..9668Fucus serratus maleCDSF-serratus_M_contig8191 9585..9668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8191.19607.1

>prot_F-serratus_M_contig8191.19607.1 ID=prot_F-serratus_M_contig8191.19607.1|Name=mRNA_F-serratus_M_contig8191.19607.1|organism=Fucus serratus male|type=polypeptide|length=166bp
AKRPGQATKAEGALYPGGSAASGWNTFFWSRRRDWEQAFTSLYHGLLAGR
REGACTDRARDRGGGEGFYLQCPRFTVLWKLVRDRGPSCGGDSEGSSVRL
IPVAAMTQSTRRLRKRLTAAGIEFRMPLDPAGDQRDAKADEDVLEEWKAM
NVTGNAKPGAVYANEE
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mRNA from alignment at F-serratus_M_contig8191:8143..9668+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8191.19607.1 ID=mRNA_F-serratus_M_contig8191.19607.1|Name=mRNA_F-serratus_M_contig8191.19607.1|organism=Fucus serratus male|type=mRNA|length=1526bp|location=Sequence derived from alignment at F-serratus_M_contig8191:8143..9668+ (Fucus serratus male)
GCCAAGAGGCCGGGACAGGCAACGAAAGCGGAGGGAGCGTTGTACCCGGG
CGGGAGTGCAGCAAGCGGGTAATTATTTGATCGTGTTTGCTTTCCCTTTT
CTTCATTTTCTTCCCCCCCACGCCCTCCAATATCCAAGCCAGGCCTTTTC
ACCCCTTATTGTCGTTTTCGTCCGACCGCACAACAGGGGATACAGTTCAT
GCTCCAGCGATCAGTGTTCATCTTGATCCGCCCTATTTGTAACGTGGAGT
TTTAACTTGCTGACGCCACACCTTCGTTTTGGCAAAGGCTCCGCCATGTT
TTACTTTTCATATCACGCCGTAGAGGGGCACGTCAAATAGCCCCCCCCCC
CCCACCCCATTTTTACCCGGGCTCTTTTGTTGGCGTCTTTCGATGAAACT
TCGGTCTTGTCTCATGGACCCCCTCTCTGCGGGGGAAGGTGGAACACTTT
CTTTTGGTCTCGGCGTCGAGACTGGGAGCAAGCTTTCACGAGCCTCTATC
ACGGGCTGCTGGCGGGGAGGCGAGAAGGCGCTTGCACGGACCGCGCGAGA
GATCGGGGCGGAGGGGAAGGTTTTTACCTGCAGTGTCCTCGGTTCACGGT
GCTGTGGAAGCTCGTGCGCGATAGAGGGCCAAGCTGCGGCGGCGACAGCG
AGGGCAGCAGCGTTCGGTGCACCAAGTACGTCAAAGCATGCTCACACAGG
CTTTCGAGAGTTCTCTGAAAACGTGCAATCCCTAAAGCTTATCTTCTCCA
CCTTCGTCTTGAGCCCATGGCGCGCAGCCTCTCCGTCCCGCGTATTAGCC
TTGACGGCTACACCATTGACACGACTGCAATACACCCGCTTAGGAAAGGA
ATCCGACTAAACTACGCATCACAGATATGTATCAGCACAAAGAAAGGAAT
TTCACTATTTACAGTTTATTCTCTTTTGGCAGGCTAATCCCCGTAGCGGC
AATGACTCAGTCTACAAGGAGGCTGCGCAAACGCCTCACGGCGGCCGGAA
TCGAGTTTCGGATGCCTCTGGATCCGGCGGGAGATCAACGCGACGCCAAG
GCATGTTAGTACTGCCGCATGCCAAACTTTCCGGCTCTATGCCCGTTCCC
AAGTTGTCTGCGATACGTCATCGAGAAAATTGATTTCTTCCGTATAGCGT
GTGATACTGCAACTGATCTCGTTCGGTTCTTCCCTGGCCTGCTGCGATGA
AAAAGTGGCCTGCTGCAGTGGAAAAGCGTAAGGCGAACCAGGCCTCCATT
GCGCTCTCTAGATAATTCTGTACTGTTACTATAGTCAGATCAGCTCGGAA
GCTTGGCTCACAACCGACCAACATCTGTCAAACTGGACTACTCTTGGTAG
CAATAACATGACAAAATGCTATTTGCGTGACTTTATAGTTTTGCTTGGAA
CGTTGCGGTCTTGACCGTGTTCTTCTGTTGGCGATGTCCCAGGCAGACGA
GGACGTGCTCGAGGAGTGGAAAGCGATGAACGTGACGGGGAATGCCAAGC
CCGGAGCGGTGTACGCCAACGAAGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig8191:8143..9668+

>mRNA_F-serratus_M_contig8191.19607.1 ID=mRNA_F-serratus_M_contig8191.19607.1|Name=mRNA_F-serratus_M_contig8191.19607.1|organism=Fucus serratus male|type=CDS|length=996bp|location=Sequence derived from alignment at F-serratus_M_contig8191:8143..9668+ (Fucus serratus male)
GCCAAGAGGCCGGGACAGGCAACGAAAGCGGAGGGAGCGTTGTACCCGGG
CGGGAGTGCAGCAAGCGGGCCAAGAGGCCGGGACAGGCAACGAAAGCGGA
GGGAGCGTTGTACCCGGGCGGGAGTGCAGCAAGCGGGTGGAACACTTTCT
TTTGGTCTCGGCGTCGAGACTGGGAGCAAGCTTTCACGAGCCTCTATCAC
GGGCTGCTGGCGGGGAGGCGAGAAGGCGCTTGCACGGACCGCGCGAGAGA
TCGGGGCGGAGGGGAAGGTTTTTACCTGCAGTGTCCTCGGTTCACGGTGC
TGTGGAAGCTCGTGCGCGATAGAGGGCCAAGCTGCGGCGGCGACAGCGAG
GGCAGCAGCGTTCGGTGGAACACTTTCTTTTGGTCTCGGCGTCGAGACTG
GGAGCAAGCTTTCACGAGCCTCTATCACGGGCTGCTGGCGGGGAGGCGAG
AAGGCGCTTGCACGGACCGCGCGAGAGATCGGGGCGGAGGGGAAGGTTTT
TACCTGCAGTGTCCTCGGTTCACGGTGCTGTGGAAGCTCGTGCGCGATAG
AGGGCCAAGCTGCGGCGGCGACAGCGAGGGCAGCAGCGTTCGGCTAATCC
CCGTAGCGGCAATGACTCAGTCTACAAGGAGGCTGCGCAAACGCCTCACG
GCGGCCGGAATCGAGTTTCGGATGCCTCTGGATCCGGCGGGAGATCAACG
CGACGCCAAGGCTAATCCCCGTAGCGGCAATGACTCAGTCTACAAGGAGG
CTGCGCAAACGCCTCACGGCGGCCGGAATCGAGTTTCGGATGCCTCTGGA
TCCGGCGGGAGATCAACGCGACGCCAAGGCAGACGAGGACGTGCTCGAGG
AGTGGAAAGCGATGAACGTGACGGGGAATGCCAAGCCCGGAGCGGTGTAC
GCCAACGAAGAGGCAGACGAGGACGTGCTCGAGGAGTGGAAAGCGATGAA
CGTGACGGGGAATGCCAAGCCCGGAGCGGTGTACGCCAACGAAGAG
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