mRNA_F-serratus_M_contig819.19605.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig819.19605.1 vs. uniprot
Match: D7FTN1_ECTSI (Similar to hect domain and RLD 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN1_ECTSI) HSP 1 Score: 271 bits (692), Expect = 6.250e-72 Identity = 309/969 (31.89%), Postives = 397/969 (40.97%), Query Frame = 3
Query: 288 GAWGGGELSTVPSALCDVALRENVATEMARRRWRKDSGDHFMGVEDW-GDPLQALPWEEIGRNGKEAPQARAEGEQEGAERGEGNEPCDRVMVFGDSGERGSEQTSMFEVFEDQEECIFEDRVGVKWGGGRRGGVEGGGDERVEAGRGRGREEVDVLQVSCAQQCFAAVTRGGSLHTWGLD--DGSGWHGWGGGERWGRNEGKRAGGGGRRPECCSCRCFC*RTGSAEGSFESHVSCQKSC---HAGVLRREAHSRRDR*WSAVRVGR*PLRPVRPPKVGAAPASVDTVAVSFVVFVVFLWDGRRFTRSQLRNRQRLLGSFCNEKTKGFSLQLQRRYSRWQGKAWYRRSSW*GKWWR*SAGGRVPAY---------SGEGLGGQG*PAA*GLTGRVRSFPLFGHRSFPPREFP-------------------AARRFSAAVDFPNWRWYRY*SASLVGAGRL-REARKKPITAIAVFKRTITITPTVSVAEKSLVLPPYTAHLTQVAGGFGVGSIRGDAAVDW--------------------------------SNPSNTPGNRDLNRAGTLLSSAPEP----------PTPRYAPETDGSFDLPAVVECDWSYRVNDHREQGVPLALAPTYNRTDQSN-----------------------------------GGTFSGET---GGDSDLCGPVAVAAGWRHSVAVTADGATFVWGCGAQGRLGLGSCADVTTPQQIRALASRSIRIRQAAAGRAHTMFLSETGIVYSCGSNEVGQQGRNFGSQSVAASSTGTFHDSPALSPTNLPQRSEGAVGGGDXXXXXXXXXXAGESEGGFERTNVSQSDC-LAPTAV-----GIQGGTLARLYVESIAAGDDHCTAVTAPKRASLDKTDSSVGGXXXXAGVTE-----------ESALTRVFTWGLNAAGQCVQSRATEIVPAPQEAELLSGARTVGCGGAY 2798
GAWGG ELS VP+ALCD ALRENV +E+ R+ G + +ED GDP + LPWE +G G+ + AE EQ G R MVFGD+GE G+EQ++MF++ + G E G + G G VDV+QVSC + FAAV RGG L+TWGLD DG HG GGG G G R + + HV Q SC H V+ E H W R G + G S+ + A S G + L+ ++ +K G + + +G +GG + + G+ L + A +GR S + RS P SA V N R S G+GRL R R+ P ++ +P+++ PP+ + +AG G R R+G APEP PTP + +F++PA V DW+YRVNDHR G PL PT G G T GD GPVA+AAGWRHSVAVT +GA F WGCG++GRLGLGS D P+Q+RALASR+IR+RQAAAGRAHT+FLSE+G VYSCGSNE GQQGR G+ S A S+ + ++ S + + AV GG X VS S C LAPT V G ++ L V+ +AAGDDHCT +T+ + ++ T XXXX S+ RVFTWGLNAAGQC RA E+V APQEAELLSGAR VGCG +
Sbjct: 660 GAWGG-ELSVVPAALCDTALRENVRSELEARQ----GGGAVVAIEDLTGDPAERLPWESVGVEGQRPGASPAEEEQ-----GSSRTNVGRGMVFGDAGEWGAEQSTMFQITDGGXXXXXXXXX--------EGESEADGGTKGRGEGGAGWSAVDVVQVSCGKHFFAAVARGGGLYTWGLDASDGRLGHGSGGG-----------GAAGTRADAAGSPFWLKAPVRVAALSADHVV-QVSCGAKHTLVITSEGHLFA---WGDNRYG----------QCGLPWHSLSSPADSP--------RGDGDGQFGLKTFGQMAKKMSTKKFPGGADKAGDGSDGGKGNG--------------DSGGGMTVFRPTLVLLRQEGDDLPLRVLQVA---SGRQHSLAIACSRSNDKACVPDNSAXXXXXXXXXXXXXXXXXXXXSARV---NHRANVLYSWGATGSGRLGRLPRRNPSSS------PFASSPSLTSPSPRQPPPPHRSKSDSLAGVLPSAKSSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLLGERREREGGRGGPRSGDGELPAPEPGQQGSAPRATPTPXXXRPPE-AFNMPAPVAADWTYRVNDHRRHGAPLVAVPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAGVTEGMTVLEPGDGVGRGPVAIAAGWRHSVAVTEEGAVFAWGCGSEGRLGLGSHVDANAPRQVRALASRAIRVRQAAAGRAHTLFLSESGNVYSCGSNEFGQQGRG-GAGSAAQRSSASQSNADGSS-RETSRSTHPAVDGGXX----------------XXXXXVSTSLCMLAPTIVTXXXXXXXXGGVSGLRVQRVAAGDDHCTVLTSSEPNTVTATXXXXXXXXXXXXXXXXXXXXXXXXQGSSSGRRVFTWGLNAAGQCAHGRAAEVVGAPQEAELLSGARAVGCGAGH 1532
BLAST of mRNA_F-serratus_M_contig819.19605.1 vs. uniprot
Match: A0A6H5JWJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ8_9PHAE) HSP 1 Score: 207 bits (528), Expect = 1.840e-51 Identity = 164/384 (42.71%), Postives = 195/384 (50.78%), Query Frame = 3
Query: 1797 GTLLSSAPEPPTPRYAPETDGSFDLPAVVECDWSYRVNDHREQGVPLALAPTYNRTDQSNGGTF-------------------------------SGETGGDSDL-------CGPVAVAAGWRHSVAVTADGATFVWGCGAQGRLGLGSCADVTTPQQIRALASRSIRIRQAAAGRAHTMFLSETGIVYSCGSNEVGQQGRNFGSQSVAASSTGTFHDSPALSPTNLPQRSEGAVGGGDXXXXXXXXXXAGESEGGFERTNVSQSDCLAPTAVGIQGGTLARLYVESIAAGDDHCTAVTA--PKRASLDKTDSSVGGXXXXAGV----------TEESALTRVFTWGLNAAGQCVQSRATEIVPAPQEAELLSGARTVGCGGAY 2798
G+ + P PP R PE +F++PA V DW+YRVNDHR G PL PT +G+T G S L GPVA+AAGWRHSVAVT +GA F WGCG+ GRLGLGS D P+Q+RALASR+IR+RQAAAGRAHT+FLSE+G VYSCGSNE GQQGR G+ S A S+ XXXXXXXXXX + + G+ G L V+ +AAGDDHCT +T+ P A XXXX ++ S+ RVFTWGLNAAGQC R E+V APQEAELLSGAR VGCG +
Sbjct: 839 GSAPRATPAPPXXR-PPE---AFNMPAPVAADWTYRVNDHRRHGAPLVAVPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAGDTEGMSVLEPGDGVGRGPVAIAAGWRHSVAVTEEGAVFAWGCGSDGRLGLGSHVDAGAPRQVRALASRAIRVRQAAAGRAHTLFLSESGNVYSCGSNEFGQQGRG-GAGSAARRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAP------TIXXXXXXXXXXXGVSG-----LRVQRVAAGDDHCTVLTSSEPNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXNSQGSSSRRVFTWGLNAAGQCAHGRVVEVVGAPQEAELLSGARAVGCGAGH 1206
BLAST of mRNA_F-serratus_M_contig819.19605.1 vs. uniprot
Match: A0A7S3Y2W4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2W4_HETAK) HSP 1 Score: 100 bits (248), Expect = 7.190e-20 Identity = 95/269 (35.32%), Postives = 123/269 (45.72%), Query Frame = 3
Query: 2001 GGDSDLCGPVAVAAGWRHSVAVTADGATFVWGCGAQGRLGLGSCADVTTPQQIRALASRSIRIRQAAAGRAHTMFLSETGIVYSCGSNEVGQQG--RNFGSQSVAASSTGTFHDSPALSPTNLPQRSEGAVGGGDXXXXXXXXXXAGESEGGFERTNVSQSDCLAPTAVGIQGGTLARLYVESIAAGDDHCTAVTAPKRASLDKTDSSVGGXXXXAGVTEESALTRVFTWGLNAAGQCVQSRATEIVPAPQEAELLSG-ARTVGCGGAY 2798
GGD G VAAGW HSVAVTA+GA F WGCG GRLGLG+ D P+Q+RALA ++R+ +AAAG HT+FL G V++ G + GQ G + + G L+P ++ GA+ G XXXXXXXXXX V +AAG++H T+ GG V+TWGLN + Q R T+ VP P E +LSG AR + G A+
Sbjct: 18 GGDGGGKGVAFVAAGWAHSVAVTAEGAVFAWGCGEHGRLGLGAHRDAAFPEQLRALAHPALRVAKAAAGYGHTLFLGRDGRVFATGLAKFGQVGIPEEMANGAFDLVKNGRKGFPALLAPLHV----GGALAPGXXXXXXXXXXXXXXXXXXXXXXXVD------------------------VAAGENHSVVRTS-------------GGA--------------VYTWGLNLGDRAAQGRGTQAVPVPTEVPILSGKARAITAGAAH 231
BLAST of mRNA_F-serratus_M_contig819.19605.1 vs. uniprot
Match: A0A7S3X5W4_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3X5W4_EMIHU) HSP 1 Score: 70.5 bits (171), Expect = 7.220e-10 Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 3
Query: 2028 VAVAAGWRHSVAVTADGATFVWGCGAQGRLGLG-SCADVTTPQQIRALASRSIRIRQAAAGRAHTMFLSETGIVYSCGSNEVGQQG 2282
V+VAAG HS+A+TADGA +VWG G +G+LG G P+Q+ ALA R R AAAG +H++F++ G+V+SCG + GQ G
Sbjct: 57 VSVAAGEDHSIAITADGAFWVWGNGQEGQLGHGVEPGFFFRPRQVAALAGR--RAVAAAAGSSHSLFVTADGLVWSCGCGDEGQLG 140
BLAST of mRNA_F-serratus_M_contig819.19605.1 vs. uniprot
Match: A0A3S1BJQ1_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1BJQ1_ELYCH) HSP 1 Score: 70.9 bits (172), Expect = 5.950e-9 Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 3
Query: 2052 HSVAVTADGATFVWGCGAQGRLGLGSCADVTTPQQIRALASRSIRIRQAAAGRAHTMFLSETGIVYSCGSNEVGQQGRNFGSQSV 2306
H VA++++G +VWG +G+LG+GS + TPQ + + I AA GR HT+FL+E+G VY+CG N++GQ G S+ V
Sbjct: 118 HCVAISSEGKVYVWGRNEKGQLGVGSTERIDTPQVLETF--EGLNIVAAACGRRHTLFLTESGKVYACGDNKMGQLGLGNQSEQV 200
BLAST of mRNA_F-serratus_M_contig819.19605.1 vs. uniprot
Match: UPI001F5F7D30 (uncharacterized protein LOC124775860 n=2 Tax=Schistocerca TaxID=7008 RepID=UPI001F5F7D30) HSP 1 Score: 71.6 bits (174), Expect = 7.520e-9 Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 3
Query: 2034 VAAGWRHSVAVTADGATFVWGCGAQGRLGLGSCADVTTPQQIRALASRSIRIRQAAAGRAHTMFLSETGIVYSCGSNEVGQQG 2282
++AG HS+A+TADG + WG G G+LG+GS D P+ ++ L + ++ Q + G H++FL+ETG V++CGS+ GQ G
Sbjct: 999 ISAGQYHSLALTADGRVYSWGWGVHGQLGIGSIEDALHPKPVKRLNGQVVK--QISGGHGHSLFLTETGEVFTCGSSVFGQLG 1079
BLAST of mRNA_F-serratus_M_contig819.19605.1 vs. uniprot
Match: UPI001D09812E (uncharacterized protein LOC123305183 n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D09812E) HSP 1 Score: 70.5 bits (171), Expect = 1.660e-8 Identity = 41/83 (49.40%), Postives = 50/83 (60.24%), Query Frame = 3
Query: 2034 VAAGWRHSVAVTADGATFVWGCGAQGRLGLGSCADVTTPQQIRALASRSIRIRQAAAGRAHTMFLSETGIVYSCGSNEVGQQG 2282
+ G HS+A+TA G + WG G G+LG G+ DV TP I + I I Q AAG AHT+ L+ GIVYS GSN VGQ G
Sbjct: 933 ICVGQYHSLALTASGRVYSWGWGVHGQLGHGNIEDVRTPTLIEYF--KDIVIAQIAAGHAHTLVLTSKGIVYSFGSNFVGQLG 1013
BLAST of mRNA_F-serratus_M_contig819.19605.1 vs. uniprot
Match: A0A6P7VSD3_IXOSC (uncharacterized protein LOC115325638 n=5 Tax=Ixodes TaxID=6944 RepID=A0A6P7VSD3_IXOSC) HSP 1 Score: 70.1 bits (170), Expect = 2.140e-8 Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 3
Query: 2034 VAAGWRHSVAVTADGATFVWGCGAQGRLGLGSCADVTTPQQIRALASRSIRIRQAAAGRAHTMFLSETGIVYSCGSNEVGQQG 2282
VA G HS+AVT +G F WG GA G+LG G+C D TP+ + ALA R+ A+AG HT+ L+ G+V+ G N GQ G
Sbjct: 885 VACGTYHSLAVTEEGRLFTWGWGAHGQLGHGTCDDQRTPRLVAALADH--RVTDASAGCGHTVALTAEGLVFGFGCNTFGQLG 965
BLAST of mRNA_F-serratus_M_contig819.19605.1 vs. uniprot
Match: A0A2R6W9J2_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W9J2_MARPO) HSP 1 Score: 68.6 bits (166), Expect = 3.440e-8 Identity = 43/93 (46.24%), Postives = 54/93 (58.06%), Query Frame = 3
Query: 2010 SDLCGP--VAVAAGWRHSVAVTADGATFVWGCGAQGRLGLGSCADVTTPQQIRALASRSIRIRQAAAGRAHTMFLSETGIVYSCGSNEVGQQG 2282
SDL G + +A G RHS +T GA +G G G+ G GS D +P I +L I+I AAG HTMF+S+TG VYSCG N+ GQ G
Sbjct: 323 SDLLGTRVIGLACGGRHSAVLTDSGAVLSFGWGLYGQCGQGSTDDELSPAYISSLGG--IKITGIAAGLWHTMFISDTGDVYSCGGNQFGQLG 413
BLAST of mRNA_F-serratus_M_contig819.19605.1 vs. uniprot
Match: A0A7R9KC37_9ACAR (Hypothetical protein n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9KC37_9ACAR) HSP 1 Score: 68.2 bits (165), Expect = 3.650e-8 Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3
Query: 2019 CGPVAVAAGWRHSVAVTADGATFVWGCGAQGRLGLGSCADVTTPQQIRALASRSIRIRQAAAGRAHTMFLSETGIVYSCGSNEV 2270
C +++A G HS+AVT G+ F WG G+LGLG + P +I+ +++ + AAG+ HTMFLS G VY+CG N++
Sbjct: 196 CRVISIACGGNHSLAVTDTGSVFGWGLNGNGQLGLGHTIKQSLPVRIQYF--NDLKVTKVAAGKCHTMFLSNEGNVYTCGCNDI 277 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig819.19605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig819.19605.1 >prot_F-serratus_M_contig819.19605.1 ID=prot_F-serratus_M_contig819.19605.1|Name=mRNA_F-serratus_M_contig819.19605.1|organism=Fucus serratus male|type=polypeptide|length=362bp MKGSRQAEGEDEKRWTFFRFPARSSALRRSPAEAACTRGDWTTAADGTGGback to top mRNA from alignment at F-serratus_M_contig819:187778..196537+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig819.19605.1 ID=mRNA_F-serratus_M_contig819.19605.1|Name=mRNA_F-serratus_M_contig819.19605.1|organism=Fucus serratus male|type=mRNA|length=8760bp|location=Sequence derived from alignment at F-serratus_M_contig819:187778..196537+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig819:187778..196537+ >mRNA_F-serratus_M_contig819.19605.1 ID=mRNA_F-serratus_M_contig819.19605.1|Name=mRNA_F-serratus_M_contig819.19605.1|organism=Fucus serratus male|type=CDS|length=2172bp|location=Sequence derived from alignment at F-serratus_M_contig819:187778..196537+ (Fucus serratus male)back to top |