mRNA_F-serratus_M_contig819.19604.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig819.19604.1 vs. uniprot
Match: D7FTN1_ECTSI (Similar to hect domain and RLD 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN1_ECTSI) HSP 1 Score: 522 bits (1345), Expect = 3.440e-161 Identity = 372/778 (47.81%), Postives = 447/778 (57.46%), Query Frame = 3
Query: 351 ILRTDFPDVWAGIVAGDGDVVVCVPQASINTSLSQGDLTLAEARAHVLTPTK-VPGEFETMDGWLVSIVGDEVVTGAGFPEPRRVRLLLSEDFSHYLSAAGQKPL--PLAXXXXXXXXXXXXXXXXXXXXXXXSTVLVSEKISGTERWAPGSRSAVETNASTGEEGAAGVL------ESGEADERGKGGSGLGDKKMTPTLKFDEK--RGKFAGKGEKEKWRREERGSKR---VRLLHVSRPLVGGLIGVPESAGELDATTVEKYAAVFKSYPEVEGVFVEMDSFADAVISYCRGRLANGGGVEGKGGIGGARSTAKEDKPSVPERVKTELRGDAKGRGADDGR------------GKARPEGGGAERPAEEKLCSVVAEQWRRSAAALTRSRCVKGGDKAGATEQREIMMMQVTESYLMARLSPGLGAWLARFHPRAEGELQRAIRLLRHHSQEDIGVSTPFQCDLCHAVDCLAELSRCPTPMDKMLQIKECLRLIQASVQRHTDAHALGDYDE-DCDLDDSSTSIRPERGVGRGRGRGGXXXXGRGHRGNMTTDDLVLLLVC--------CILGVGRRIKGGLNRDHDRSHLFFVDLAFVKAFHFCEDSTSAIYFAVSTFAVALEWLLAKVGSRLAETPAQNDLGIFLRVEDRLSCPPSTSGD--------------------------SDVGGDVAVSRGAWGGGELSTVPSALCDVALRENVATEMARRRWRKDSGDHFMGVEDW-GDPLQALPWEEIGRNGKEAPQARAEGEQ 2498
+LR DFP++WA +VAG GD V+CVPQ+ TSLSQ DLT AEARAHVLTP++ VPG+F T+DGW VS+VG+EVVTGAGFPE RRVRLLLSED +L AAG+KPL P A XXXXXXXX A GSR+ T + G+E A G E+ EAD R K S KM T EK RG +GK + R + KR VR++HVSRPL+GGL PE+AGELD TV+KY AV KSYPEV+G+F EMDSFA AV+ YC LA GG GG G AR++ D+ ++ G GA+ G + R + RP EE+LC+V+AEQWR +AA LTRSRCVKG A A E+RE+ MMQVTESYLM+RL+PGLGAWLA H A+ EL RA+ LLR+H+QEDIGV PFQCDL AV+CL L C TPMDKMLQ+KE L+LIQ SVQ++ DA D D+ D D D + + VG XXXX + + D R+ F DLAF+KAFHFCEDSTSA+YFAVSTF VALEWLLAKVG RLAETPA++ LG FL +EDR CP S D VG D V GAWGG ELS VP+ALCD ALRENV +E+ R+ G + +ED GDP + LPWE +G G+ + AE EQ
Sbjct: 1 MLRMDFPEIWAAVVAGTGDTVICVPQS---TSLSQEDLTAAEARAHVLTPSEEVPGDFLTLDGWSVSLVGNEVVTGAGFPEWRRVRLLLSEDLGQHLVAAGEKPLCPPTAAPREAAEXXXXXXXXVV---------------------AVGSRTRDSTTGALGKEDAGGAAVGDGGGETEEADARRKANSNAKVVKMVETNAAGEKEERGDASGKAKTSTTVRGKESRKRERKVRVMHVSRPLMGGLSWAPENAGELDMITVDKYTAVLKSYPEVDGMFAEMDSFAKAVLGYCSKNLAARGGSSTAGG-GSARAS---DEAAI-----------INGLGAEQGHPGGXXXXXXXXXXEGRVRRSRSRRPQEEELCAVIAEQWRLTAATLTRSRCVKGNGDAEAMERREVTMMQVTESYLMSRLAPGLGAWLAGLHAGADAELHRALTLLRYHTQEDIGVKRPFQCDLSSAVECLRGLGVCATPMDKMLQVKESLKLIQTSVQQNLDARRHADDDDRDGDTDATXXXXXXXQRVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATVGSSDANIFASKGXXXXXXXDGGRTS-FLADLAFMKAFHFCEDSTSAVYFAVSTFEVALEWLLAKVGRRLAETPAEDGLGSFLGIEDR-PCPASPLPDIVGEDGSGVGEAATDGXXXXXXXXXXPPVGDDEGV--GAWGG-ELSVVPAALCDTALRENVRSELEARQ----GGGAVVAIEDLTGDPAERLPWESVGVEGQRPGASPAEEEQ 730
BLAST of mRNA_F-serratus_M_contig819.19604.1 vs. uniprot
Match: A0A6H5JHA7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA7_9PHAE) HSP 1 Score: 287 bits (734), Expect = 8.870e-81 Identity = 220/492 (44.72%), Postives = 287/492 (58.33%), Query Frame = 3
Query: 84 RRSSSRYHDLIESVVSICTFGRNN-VGSEDEQESSQAQRLSGPTHRGASSARHNRGKMLRIGKSWLAWSIEQPKRASLSWGQADPSFFLHILRTDFPDVWAGIVAGDGDVVVCVPQASINTSLSQGDLTLAEARAHVLTPTK-VPGEFETMDGWLVSIVGDEVVTGAGFPEPRRVRLLLSEDFSHYLSAAGQKPL--PLAXXXXXXXXXXXXXXXXXXXXXXXSTVLVSEKISGTERWAPGSRSAVETNASTGEEGAAGV------LESGEADERGKGGSGLGDKKMTPTLKFDEK--RGKFAGKGEKEKWRREERGSKR---VRLLHVSRPLVGGLIGVPESAGELDATTVEKYAAVFKSYPEVEGVFVEMDSFADAVISYCRGRLANGGGVEGKGGIGGARSTAKEDKPSVPERVKTELRGDAKGRG-----ADDGRGKARPEGGGAERPAEEKLCSVVAEQWRRSAAALTRSRCVKGGDKAGATEQREI 1499
+R+SSRY LI+ V S+CT R + +G+ DE++ S A + A+ + G R +SW+A + Q +++S A ++FLH+LRTDFP++WA +VAG D V+CVPQ+ TSLSQ DLT AEARAHVLTP++ VPG+F T+DGW VS+VG+EVVTGAGFPE RRVRLLLSED +L+AAG++ L P A XXXXXXX ++G R+ T + G+EG G EAD R K S KM T EK RG +GK + R KR VR++HVSRPL+GGL PE+ GELD TV+KY AV KSYPEV+G+F EMDSFA AV+ YC LA G GG G AR++ D ++ + E G G +D+GR + +P + RP EE+LC+V+AEQWR +AA LTRSRCVKG A A E+RE+
Sbjct: 24 QRASSRYLTLIDRVASLCTLQRTDAIGNSDEEKDSAAAPAT------AAHQTRDGGMTRRSLRSWIAGRLGQSRKSS---NDATGAYFLHMLRTDFPEIWAAVVAGTVDTVICVPQS---TSLSQEDLTAAEARAHVLTPSEEVPGDFLTLDGWSVSLVGNEVVTGAGFPEWRRVRLLLSEDLGQHLAAAGKELLCPPTAAPREAAEAXXXXXXXV---------------VAGV------GRTRDSTTGALGKEGVGGAGXXXXXXXXEEADARRKANSNAKVVKMVETHAAGEKEERGDASGKAKTATTVRGGESRKRERKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYPEVDGMFAEMDSFAKAVLGYCSKNLAARAGSSTAGG-GSARAS---DAAAIINGLGAEQGHPGGGGGFGESKSDEGRVR-QPR---SRRPQEEELCAVIAEQWRLTAATLTRSRCVKGNGDAEAMERREV 474
BLAST of mRNA_F-serratus_M_contig819.19604.1 vs. uniprot
Match: A0A6H5JWJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ8_9PHAE) HSP 1 Score: 229 bits (583), Expect = 3.380e-58 Identity = 159/390 (40.77%), Postives = 193/390 (49.49%), Query Frame = 3
Query: 1503 MMQVTESYLMARLSPGLGAWLARFHPRAEGELQRAIRLLRHHSQEDIGVSTPFQCDLCHAVDCLAELSRCPTPMDKMLQIK-----------------------------ECLRLIQASVQRHTDAHALGDYDEDCDLDDSSTSIRPERGVGRGRGRGGXXXXGRGH-------------RGNMTTDDLVLLLVCCILGVGRRIKGG-LNRDHDRSHL-------------FFVDLAFVKAFHFCEDSTSAIYFAVSTFAVALEWLLAKVGSRLAETPAQNDLGIFLRVEDRLSCPPSTSGDSDVGGDVAVSRGAWGGGELSTVPSALCDVALRENVATEMARRRWRKDSGDHFMGVEDW-GDPLQALPWEEIGRNGKEA---PQARAEG 2492
MMQVTESYLM+RL+PGLGAWLA H A+ EL+RA+ LLR+H+QEDIGV PFQCDL AV+CL L C TPMDKMLQ+K E ++LIQ SVQ++ DA G G+ G M TDD+V+LLVCC++ G + G N +S F DLAF+KAFHFCEDSTSA+YFAVSTF VALEWLL KVG RLAETPA+N LG FL +EDR CP S D + G GE T VA +E+ R+ G + +ED GDP + L WE +G G+ P AR +G
Sbjct: 1 MMQVTESYLMSRLAPGLGAWLAELHAGADAELRRALTLLRYHTQEDIGVKRPFQCDLSSAVECLRGLGACATPMDKMLQVKVGTSGNDWLEDGVVKENVFSVRSFFMFTEESIKLIQTSVQQNLDARRRAXXXXXXXXXXXXXXXXXRAGQRVGKTGGDRVYEEDAEVLQKTNTLGWCLVEAQMATDDIVVLLVCCLIEAGATVGGSDANVSAGKSXXXXXXXXXXXXRTSFLADLAFIKAFHFCEDSTSAVYFAVSTFEVALEWLLGKVGRRLAETPAENGLGSFLGIEDR-PCPASPLPD-------IIGEDGSGVGEAGT-GXXXXXVAATAPPPSELEARQ----GGGAVVAIEDLTGDPTERLWWESVGVEGQRPGARPAAREQG 377
BLAST of mRNA_F-serratus_M_contig819.19604.1 vs. uniprot
Match: A0A7S3YG70_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG70_HETAK) HSP 1 Score: 81.3 bits (199), Expect = 1.790e-13 Identity = 44/111 (39.64%), Postives = 70/111 (63.06%), Query Frame = 3
Query: 324 QADPSFFLHILRTDFPDVWAGIVAGDGDVVVCVPQASINTSLSQGDLTLAEARAHVLTPTKVPGEFETMDGWLVSIVGDEVVTGAGFPEPRRVRLLLSEDFSHYLSAAGQK 656
+ D + FL +LRT FP VW ++A D +VC PQ++ SL Q +TL + + HV+T TK+ GE+E+++ +V++VG E+VT G+P PR VR+L ++ + G K
Sbjct: 48 ETDDALFLLVLRTSFPKVWQWLLAND--CMVCCPQSA---SLPQ-TITLEDVQTHVVTQTKIAGEYESLNNKVVTMVGAEMVTQRGYPAPRTVRVLRVDELEVPRAEVGLK 152
BLAST of mRNA_F-serratus_M_contig819.19604.1 vs. uniprot
Match: A0A5D6Y6E5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y6E5_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 2.330e-12 Identity = 133/646 (20.59%), Postives = 206/646 (31.89%), Query Frame = 3
Query: 417 CVPQASINTSLSQGDLTLAEARAHVLTP--------TKVPGEFETMDGWLVSIVGDEVVTGAGFPEPRRVRLLLSEDFSHYLSAAGQKPLPLAXXXXXXXXXXXXXXXXXXXXXXXSTVLVSEKISGTERWAPGSRSAVETNASTGEEGAAGVLESGEADERGKGGSGLGDKKMTPTLKFDEKRGKFAGKGEKEKWRREERGSKRVRLLHVSRPLVGGLIGVPESAGELDATTVEKYAAVFKSYPEVEGVFVEMDSFADAVISYCRGRLANGGGVEGKGGIGGARSTAKEDKPSVPERVKTELRGDAKGRGADDGRGKARPEGGGAERPAEEKLCSVVAEQWRRSAAALTRSRCV------------KGGDKAGATEQRE---IMMMQVTESYLMARLSPGLGAWLARFHPRAEGELQRAIRLLRHHSQEDIGVSTPFQCDLCHAVDCLAELSRCPTPMDKMLQIKECLRLIQASVQRHTDAHAL--GDYDEDCD--LDD-------------------------SSTSIRPERGVGRGRGRGGXXXXGRGHRGNMTTDDLVLLLVCCILGVGRRIKGGLNRDHDRSHLFFVDLAFVKAFHFCEDSTSAIYFAVSTFAVALEWLLAKV-----GSRLAETPAQNDL 2183
C PQ + L+ +L E AH LTP T+ GE+ET++G V+I G VVTG GFPEPR+VR+LLSE E +RV +LH+SRPLVGG + +PE E+D T + A+ +++PE E F ++D+ V C + ++P +++ ++W + A+ R+ G GA+ R + + QV E YL +L L + + L R + +RH+S D GV T FQC + AVD L + TP+D +L K C+ + ++ R+ + H L G Y D LD S + +R G G GRG H G+ + L + G +++ S L ++ +HF +T+A+ F ++ F VA E+ L + G AE P +
Sbjct: 24 CAPQP--RSLLADQAPSLDELYAHFLTPAGAADDAHTRRAGEYETLNGKSVTIQGSHVVTGRGFPEPRKVRILLSEP-------------------------------------------------------------------------------------------------------------------------REVHRQRVTVLHLSRPLVGG-VALPEDPNEIDVATFRRVTAILRAFPENELAFFDLDATVAQVRKICA-----------------QHQFFNRYEATLP---------------------------------------ALLRDEWDAAVDAILRAGSFDSDGDNDGDHDDSGYGAHGASAGRSHHMLQIQQVVECYLTEQLHAVLFPRVVVGCRAQDAALARVLYRMRHYSPADFGVRTAFQCSVQPAVDALLGVRGRKTPLDMLLAFKSCIDRVNDAITRNLEQHRLDFGRYQMTTDDILDQLLYVLVQAHNQAALADALPLHLRAGSDSDESADRVDGGGAGRGSLSQSDDTHGGDAESQSSQL-----------HDEAGWSQEDATSFPVAAVLKYISEYHFINSNTTALGFTIANFQVATEYFLLRASHLESGDAAAEAPCSQGI 478
BLAST of mRNA_F-serratus_M_contig819.19604.1 vs. uniprot
Match: A0A8K1CEM3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEM3_PYTOL) HSP 1 Score: 82.0 bits (201), Expect = 3.820e-12 Identity = 67/264 (25.38%), Postives = 107/264 (40.53%), Query Frame = 3
Query: 1008 VRLLHVSRPLVGGLIGVPESAGELDATTVEKYAAVFKSYPEVEGVFVEMDSFADAVISYCRGRLANGGGVEGKGGIGGARSTAKEDKPSVPERVKTELRGDAKGRGADDGRGKARPEGGGAERPAEEKLCSVVAEQWRRSAAALTRSRCVKGGDKAGATEQRE-IMMMQVTESYLMARLSPGLGAWLARFHPRAEGELQRAIRLLRHHSQEDIGVSTPFQCDLCHAVDCLAELSRCPTPMDKMLQIKECLRLIQASVQRHTDAH 1796
+ LLH+SRPL+GG++ +PE E+D T +Y A+ +S+PE E VF +D V CR A + ++P+ +K E V E+ + +GG A +T + + QV E YLM +L + + + +L R + +RH++ D G+ FQCDL A D L + TP++ +L K C+ I V R+ +AH
Sbjct: 110 IMLLHLSRPLIGGIV-LPEDPNEIDLATFRRYTAILRSFPENELVFFHLDETIAQVRKICR-----------------LNQFANRYESTLPQILKEEW--------------------------------GVAVEEIANGGSFADEEE--EGGQYARSTASSHWLQIQQVVECYLMEQLHDYVFPHVQTSARSEDEKLVRVLHRMRHYTPRDFGIRKEFQCDLREARDELLSVLTKKTPLEMLLGFKTCIDHINDGVTRNLNAH 321 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig819.19604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig819.19604.1 >prot_F-serratus_M_contig819.19604.1 ID=prot_F-serratus_M_contig819.19604.1|Name=mRNA_F-serratus_M_contig819.19604.1|organism=Fucus serratus male|type=polypeptide|length=970bp MPKAIVQEDESSQGDDSYRQENIYTVDRRSSSRYHDLIESVVSICTFGRNback to top mRNA from alignment at F-serratus_M_contig819:170629..189904+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig819.19604.1 ID=mRNA_F-serratus_M_contig819.19604.1|Name=mRNA_F-serratus_M_contig819.19604.1|organism=Fucus serratus male|type=mRNA|length=19276bp|location=Sequence derived from alignment at F-serratus_M_contig819:170629..189904+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig819:170629..189904+ >mRNA_F-serratus_M_contig819.19604.1 ID=mRNA_F-serratus_M_contig819.19604.1|Name=mRNA_F-serratus_M_contig819.19604.1|organism=Fucus serratus male|type=CDS|length=5820bp|location=Sequence derived from alignment at F-serratus_M_contig819:170629..189904+ (Fucus serratus male)back to top |