mRNA_F-serratus_M_contig819.19602.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig819.19602.1
Unique NamemRNA_F-serratus_M_contig819.19602.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig819.19602.1 vs. uniprot
Match: A0A6H5L777_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L777_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 5.710e-12
Identity = 45/110 (40.91%), Postives = 63/110 (57.27%), Query Frame = -2 
Query:  148 AARCESIRLVSLSWAADCAVRGTRIKQQSRSEYLSPFLDVAMSGRVPQVAVGANASSLISAGVTSERYRLSPSIVASIRPSRLRAFVARTSERYEVGDHVRYVAQGAATG 477
            AA+ E + +V+LSWA DC VRGTR++QQ+R EYL+PFLD +                 ++AG  S R +     +A    +RL   V+R+  RYEVGDHV + A G+  G
Sbjct: 2922 AAKLEGVPVVALSWAMDCVVRGTRVRQQARPEYLTPFLDAS-----------------VAAGRPSSRSQS----LAGGTDTRLLVAVSRSGTRYEVGDHVYFSAAGSGRG 3010
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig819.19602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L777_9PHAE5.710e-1240.91BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig819contigF-serratus_M_contig819:135463..136129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size669
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932437.9187226-CDS-F-serratus_M_contig819:135462..1358491622932437.9187226-CDS-F-serratus_M_contig819:135462..135849Fucus serratus maleCDSF-serratus_M_contig819 135463..135849 +
1690964308.7558067-CDS-F-serratus_M_contig819:135462..1358491690964308.7558067-CDS-F-serratus_M_contig819:135462..135849Fucus serratus maleCDSF-serratus_M_contig819 135463..135849 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932437.944591-UTR-F-serratus_M_contig819:135849..1361291622932437.944591-UTR-F-serratus_M_contig819:135849..136129Fucus serratus maleUTRF-serratus_M_contig819 135850..136129 +
1690964308.7651563-UTR-F-serratus_M_contig819:135849..1361291690964308.7651563-UTR-F-serratus_M_contig819:135849..136129Fucus serratus maleUTRF-serratus_M_contig819 135850..136129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig819.19602.1prot_F-serratus_M_contig819.19602.1Fucus serratus malepolypeptideF-serratus_M_contig819 135463..135849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig819.19602.1

>prot_F-serratus_M_contig819.19602.1 ID=prot_F-serratus_M_contig819.19602.1|Name=mRNA_F-serratus_M_contig819.19602.1|organism=Fucus serratus male|type=polypeptide|length=129bp
EGDEHPVARRQLEGDHAPHADVRRAANFVAFATRRIFTTPTRLAAVVATT
GGGSLCDVSHMIANLVALTRPRHKSAQARRPDASHDRRRKAISLGGDSSG
DQRGGVGSHGDLRHSPTHGYVQERRQIL*
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mRNA from alignment at F-serratus_M_contig819:135463..136129+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig819.19602.1 ID=mRNA_F-serratus_M_contig819.19602.1|Name=mRNA_F-serratus_M_contig819.19602.1|organism=Fucus serratus male|type=mRNA|length=667bp|location=Sequence derived from alignment at F-serratus_M_contig819:135463..136129+ (Fucus serratus male)
GAGGGTGACGAACACCCGGTCGCTCGGCGCCAGCTCGAGGGAGACCACGC
GCCCCACGCGGACGTCCGAAGAGCCGCCAACTTTGTGGCCTTCGCGACCC
GCCGGATTTTCACGACTCCGACCAGACTGGCCGCGGTCGTTGCCACCACC
GGTGGCGGCTCCCTGTGCGACGTATCGCACATGATCGCCAACCTCGTAGC
GCTCACTCGTCCGCGCCACAAAAGCGCGCAGGCGCGACGGCCTGATGCTA
GCCACGATCGAAGGCGAAAGGCGATATCTCTCGGAGGTGACTCCAGCGGA
GATCAGAGAGGAGGCGTTGGCTCCCACGGCGACCTGCGGCACTCTCCCAC
TCATGGCTACGTCCAGGAAAGGCGACAGATACTCTGAGCGCGACTGCTGT
TTTATCCGCGTTCCACGAACGGCGCAATCGGCGGCCCAGGACAAGGACAC
CAGGCGGATGCTTTCACAACGCGCTGCGGCCATTAGACGCCTGAGCATTG
TAAGCGCGCCTTGGCCTTGACCCCCCAACCGATGACACGATTGCGAATGC
GCTCGCCCAAGGGTCGAATCGCCGCGGCCGCTGTGAAGTCCGCGTTTCCG
TCCCAGCTTCATTCGTGGGGGTGTCGATAGATCGGTCTCCATTCGTCCAC
CTGGAACCATAGCGCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig819:135463..136129+

>mRNA_F-serratus_M_contig819.19602.1 ID=mRNA_F-serratus_M_contig819.19602.1|Name=mRNA_F-serratus_M_contig819.19602.1|organism=Fucus serratus male|type=CDS|length=774bp|location=Sequence derived from alignment at F-serratus_M_contig819:135463..136129+ (Fucus serratus male)
GAGGGTGACGAACACCCGGTCGCTCGGCGCCAGCTCGAGGGAGACCACGC
GCCCCACGCGGACGTCCGAAGAGCCGCCAACTTTGTGGCCTTCGCGACCC
GCCGGATTTTCACGACTCCGACCAGACTGGCCGCGGTCGTTGCCACCACC
GGTGGCGGCTCCCTGTGCGACGTATCGCACATGATCGCCAACCTCGTAGC
GCTCACTCGTCCGCGCCACAAAAGCGCGCAGGCGCGACGGCCTGATGCTA
GCCACGATCGAAGGCGAAAGGCGATATCTCTCGGAGGTGACTCCAGCGGA
GATCAGAGAGGAGGCGTTGGCTCCCACGGCGACCTGCGGCACTCTCCCAC
TCATGGCTACGTCCAGGAAAGGCGACAGATACTCTGAGAGGGTGACGAAC
ACCCGGTCGCTCGGCGCCAGCTCGAGGGAGACCACGCGCCCCACGCGGAC
GTCCGAAGAGCCGCCAACTTTGTGGCCTTCGCGACCCGCCGGATTTTCAC
GACTCCGACCAGACTGGCCGCGGTCGTTGCCACCACCGGTGGCGGCTCCC
TGTGCGACGTATCGCACATGATCGCCAACCTCGTAGCGCTCACTCGTCCG
CGCCACAAAAGCGCGCAGGCGCGACGGCCTGATGCTAGCCACGATCGAAG
GCGAAAGGCGATATCTCTCGGAGGTGACTCCAGCGGAGATCAGAGAGGAG
GCGTTGGCTCCCACGGCGACCTGCGGCACTCTCCCACTCATGGCTACGTC
CAGGAAAGGCGACAGATACTCTGA
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