mRNA_F-serratus_M_contig818.19593.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig818.19593.1
Unique NamemRNA_F-serratus_M_contig818.19593.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig818.19593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig818contigF-serratus_M_contig818:225990..226835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size418
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932437.4709659-CDS-F-serratus_M_contig818:225989..2261321622932437.4709659-CDS-F-serratus_M_contig818:225989..226132Fucus serratus maleCDSF-serratus_M_contig818 225990..226132 -
1690964308.582992-CDS-F-serratus_M_contig818:225989..2261321690964308.582992-CDS-F-serratus_M_contig818:225989..226132Fucus serratus maleCDSF-serratus_M_contig818 225990..226132 -
1622932437.5224712-CDS-F-serratus_M_contig818:226561..2268351622932437.5224712-CDS-F-serratus_M_contig818:226561..226835Fucus serratus maleCDSF-serratus_M_contig818 226562..226835 -
1690964308.597066-CDS-F-serratus_M_contig818:226561..2268351690964308.597066-CDS-F-serratus_M_contig818:226561..226835Fucus serratus maleCDSF-serratus_M_contig818 226562..226835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig818.19593.1prot_F-serratus_M_contig818.19593.1Fucus serratus malepolypeptideF-serratus_M_contig818 225990..226835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig818.19593.1

>prot_F-serratus_M_contig818.19593.1 ID=prot_F-serratus_M_contig818.19593.1|Name=mRNA_F-serratus_M_contig818.19593.1|organism=Fucus serratus male|type=polypeptide|length=139bp
TSNRATQTTRHATKMILSEQREGHGHDPDRGSPSSAGEGEGDSRLGRPTP
NRPRRKRVWKSHHERQVLLTKYRQRSRAVCGESGDNHRRLPDVNGRTAGV
AAVVAAQNQPCAVRFNREGVELTTDSLGANGCFIDVYNR
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mRNA from alignment at F-serratus_M_contig818:225990..226835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig818.19593.1 ID=mRNA_F-serratus_M_contig818.19593.1|Name=mRNA_F-serratus_M_contig818.19593.1|organism=Fucus serratus male|type=mRNA|length=846bp|location=Sequence derived from alignment at F-serratus_M_contig818:225990..226835- (Fucus serratus male)
ACGAGCAATCGAGCGACGCAGACCACTAGGCACGCCACAAAAATGATCCT
AAGCGAGCAGCGCGAAGGCCACGGTCATGACCCCGACAGAGGTTCGCCAT
CCAGCGCTGGTGAGGGCGAAGGCGACAGCAGATTGGGGCGCCCCACGCCC
AACCGCCCGCGGAGGAAGCGCGTCTGGAAGAGTCACCACGAGCGACAGGT
GCTGCTGACCAAGTATCGGCAACGCTCTCGGGCGGTGTGCGGGGAGAGCG
GCGATAATCACCGTCGCTTGCCAGGTGCAGTTGTGTGTAACGCGATATCG
GTGTGGGGAAGCGGTACTCGTAGCGCCGTACGGGATTCTGCTGCTGTCCC
CACTGTTGGGAGGGGATTTTGTATTATCGTTCGGGGGGGCGGGGGGGGGG
GGGGGTCCCTTATCGAGACGGAGTGGAGAGGGGTCGTTTTGTCTTTCGTT
TTGTATTTGCGGGAGGGTGGTCGGAGGGTTTTTTTTGAAGCGCATATCTG
ACGGTCATGCAGTTAATGTTACGTTTTTCGCCTCGCCCGTTGAAAAATAA
TGTTCTGTGCTTGTATTGGTGTTTGACTTTATTGAGGAGGCGTACGTTGA
TCTCGTCGAGTAAACTCGGCGGCGAAACGGCGGCCACTTTTCGTCTCTTG
GCGTAAACGGTAATGTTTTTCATTTCCGGAGTGTCTTTCCGCTCCTCTCA
CAGATGTTAACGGTCGCACGGCTGGAGTGGCGGCGGTTGTGGCAGCTCAG
AATCAGCCGTGCGCGGTCCGGTTCAACCGCGAGGGCGTGGAATTAACGAC
GGACTCGCTCGGCGCCAACGGTTGCTTCATTGATGTTTACAACAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig818:225990..226835-

>mRNA_F-serratus_M_contig818.19593.1 ID=mRNA_F-serratus_M_contig818.19593.1|Name=mRNA_F-serratus_M_contig818.19593.1|organism=Fucus serratus male|type=CDS|length=834bp|location=Sequence derived from alignment at F-serratus_M_contig818:225990..226835- (Fucus serratus male)
ACGAGCAATCGAGCGACGCAGACCACTAGGCACGCCACAAAAATGATCCT
AAGCGAGCAGCGCGAAGGCCACGGTCATGACCCCGACAGAGGTTCGCCAT
CCAGCGCTGGTGAGGGCGAAGGCGACAGCAGATTGGGGCGCCCCACGCCC
AACCGCCCGCGGAGGAAGCGCGTCTGGAAGAGTCACCACGAGCGACAGGT
GCTGCTGACCAAGTATCGGCAACGCTCTCGGGCGGTGTGCGGGGAGAGCG
GCGATAATCACCGTCGCTTGCCAGACGAGCAATCGAGCGACGCAGACCAC
TAGGCACGCCACAAAAATGATCCTAAGCGAGCAGCGCGAAGGCCACGGTC
ATGACCCCGACAGAGGTTCGCCATCCAGCGCTGGTGAGGGCGAAGGCGAC
AGCAGATTGGGGCGCCCCACGCCCAACCGCCCGCGGAGGAAGCGCGTCTG
GAAGAGTCACCACGAGCGACAGGTGCTGCTGACCAAGTATCGGCAACGCT
CTCGGGCGGTGTGCGGGGAGAGCGGCGATAATCACCGTCGCTTGCCAGAT
GTTAACGGTCGCACGGCTGGAGTGGCGGCGGTTGTGGCAGCTCAGAATCA
GCCGTGCGCGGTCCGGTTCAACCGCGAGGGCGTGGAATTAACGACGGACT
CGCTCGGCGCCAACGGTTGCTTCATTGATGTTTACAACAGGATGTTAACG
GTCGCACGGCTGGAGTGGCGGCGGTTGTGGCAGCTCAGAATCAGCCGTGC
GCGGTCCGGTTCAACCGCGAGGGCGTGGAATTAACGACGGACTCGCTCGG
CGCCAACGGTTGCTTCATTGATGTTTACAACAGG
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