mRNA_F-serratus_M_contig818.19585.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig818.19585.1
Unique NamemRNA_F-serratus_M_contig818.19585.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig818.19585.1 vs. uniprot
Match: A0A6H5JPN1_9PHAE (CRAL-TRIO domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN1_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.540e-16
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = 3 
Query:   87 VPLLQEATAVGLSYYPERLGQQLIVNVPPEDSAL--------ILLAVRSLGLGVAIDDRRLRVLAGNRPEWPTELLKAIAPE 308
            + LLQ+A A+GLS YPERLGQ  +VNVP  D A         ++LA R+LGLG A+D  +LRVL G  P+W  ELLKAI PE
Sbjct:   39 LSLLQDAAAIGLSRYPERLGQLFVVNVPAADHACGGCGSGGGLMLAARALGLGAALDAGKLRVLPGELPKWAPELLKAIPPE 120
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BLAST of mRNA_F-serratus_M_contig818.19585.1 vs. uniprot
Match: D8LI57_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI57_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 7.430e-16
Identity = 47/96 (48.96%), Postives = 59/96 (61.46%), Query Frame = 3 
Query:   69 KGWRQR------VPLLQEATAVGLSYYPERLGQQLIVNVPPEDSA----------LILLAVRSLGLGVAIDDRRLRVLAGNRPEWPTELLKAIAPE 308
            +GW Q       + LLQ+A A+GLS YPERLGQ  +VNVP  D A           ++LA R+LGLG A++  +LRVL G  P+W  ELLKAI PE
Sbjct:  189 RGWDQDNASDSVLSLLQDAAAIGLSRYPERLGQLFVVNVPAADRASGGSXXXXXXXLMLAARALGLGAALEAGKLRVLPGELPKWAPELLKAIPPE 284
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig818.19585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPN1_9PHAE1.540e-1654.88CRAL-TRIO domain-containing protein (Fragment) n=1... [more]
D8LI57_ECTSI7.430e-1648.96CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig818contigF-serratus_M_contig818:57876..59017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size473
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig818.19585.1prot_F-serratus_M_contig818.19585.1Fucus serratus malepolypeptideF-serratus_M_contig818 57876..58331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932435.6772616-CDS-F-serratus_M_contig818:57875..579471622932435.6772616-CDS-F-serratus_M_contig818:57875..57947Fucus serratus maleCDSF-serratus_M_contig818 57876..57947 +
1690964307.820109-CDS-F-serratus_M_contig818:57875..579471690964307.820109-CDS-F-serratus_M_contig818:57875..57947Fucus serratus maleCDSF-serratus_M_contig818 57876..57947 +
1622932435.703159-CDS-F-serratus_M_contig818:58190..583311622932435.703159-CDS-F-serratus_M_contig818:58190..58331Fucus serratus maleCDSF-serratus_M_contig818 58191..58331 +
1690964307.8316495-CDS-F-serratus_M_contig818:58190..583311690964307.8316495-CDS-F-serratus_M_contig818:58190..58331Fucus serratus maleCDSF-serratus_M_contig818 58191..58331 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932435.7267191-UTR-F-serratus_M_contig818:58331..584111622932435.7267191-UTR-F-serratus_M_contig818:58331..58411Fucus serratus maleUTRF-serratus_M_contig818 58332..58411 +
1690964307.84042-UTR-F-serratus_M_contig818:58331..584111690964307.84042-UTR-F-serratus_M_contig818:58331..58411Fucus serratus maleUTRF-serratus_M_contig818 58332..58411 +
1622932435.7552068-UTR-F-serratus_M_contig818:58837..590171622932435.7552068-UTR-F-serratus_M_contig818:58837..59017Fucus serratus maleUTRF-serratus_M_contig818 58838..59017 +
1690964307.8500843-UTR-F-serratus_M_contig818:58837..590171690964307.8500843-UTR-F-serratus_M_contig818:58837..59017Fucus serratus maleUTRF-serratus_M_contig818 58838..59017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig818.19585.1

>prot_F-serratus_M_contig818.19585.1 ID=prot_F-serratus_M_contig818.19585.1|Name=mRNA_F-serratus_M_contig818.19585.1|organism=Fucus serratus male|type=polypeptide|length=71bp
MLANQFIVEGIVIRCDAEGWNQEKVGDSVFHSCKKPPPLGCRIIPSASAN
SSSSTSPRKIPRSFSWRFAL*
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mRNA from alignment at F-serratus_M_contig818:57876..59017+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig818.19585.1 ID=mRNA_F-serratus_M_contig818.19585.1|Name=mRNA_F-serratus_M_contig818.19585.1|organism=Fucus serratus male|type=mRNA|length=1142bp|location=Sequence derived from alignment at F-serratus_M_contig818:57876..59017+ (Fucus serratus male)
ATGCTCGCAAACCAGTTTATCGTCGAGGGCATCGTAATCCGGTGTGACGC
CGAAGGCTGGAACCAGGAAAAGGTGAGAAAGGCATATGCACAAGTTTTTT
CATTTTCATTGTATCGCCCCTGCGGTCATGCATTCGTACGCGTGCTCGAA
AGAATTGACGAGCTGCTAGCAACATTCGGTGGTCCCGATTTGGTCCTCCG
CGGTGAGCGTCGACTGATTGCGACCAATATAGGCGGACGCCATGAAAAGA
AACCGCACTTGCCCCACGCTTCTCCGTTTCTGTATCCCCTCTTCTCCCCT
TATCCCTCTCAAAAGGTTGGCGACAGCGTGTTCCACTCCTGCAAGAAGCC
ACCGCCGTTGGGCTGTCGTATTATCCCGAGCGCCTCGGCCAACAGCTCAT
CGTCAACGTCCCCCCGGAAGATTCCGCGCTCATTCTCCTGGCGGTTCGCT
CTCTAGGTCTCGGTGTCGCCATCGACGACAGGAGACTGCGTGTCTTAGCC
GGGAACCGGCCGGAGTGGCCCACCGAGCTTCTTAAGGTAAGGAAATAATG
TTTATAGGCACGTCCGTCGGCTTGTCTTTTGTGCGCCGGCGGCCGAACTT
GACACACGCGGTGGAAGGACCTAAATTGAAGCGACTAGAAATACAACAAT
GGGTGGCGGCCCACCAACTTTAGCCGCCGGGGACCCTCTTTTTTATTTTT
TGCAAGCGGCGTGTCTGTTTGCCGTGGTATACCTACTCGAGGTAGCATGG
GTGTAACGTGGCATGGCGTGGGTGTTTACTATCCCCGCGTGCCGTTGATT
TACTATAATACTTTGCTCATTGCCAATATCACGCGCTTATCAAGCCTCTC
CCCTACGAGCGAGCGCGCGTGTCGGTTTACCTCGCCCTATCCGCAAACCC
TGTCAAGTTGTCAAGCCACTCGTCAAGCGACGTTTCGTGTGTATCCTCGT
GCGTACTCTCAGGCGATTGCACCAGAGTCTTACCGGTTGGCTTCGGTGTC
ACGGCGCCCGCGCTCCATCCGACTGGTGGCAACCCCGACACCCCGCCATC
GACCCCTCTTGCCAATGACCAGAGAAAAACATTTTGGGTTGACTCCGGTG
GCACGGCGCCCGCGCACAATCCGAGTGGTGGCAACCCCGACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig818:57876..59017+

>mRNA_F-serratus_M_contig818.19585.1 ID=mRNA_F-serratus_M_contig818.19585.1|Name=mRNA_F-serratus_M_contig818.19585.1|organism=Fucus serratus male|type=CDS|length=426bp|location=Sequence derived from alignment at F-serratus_M_contig818:57876..59017+ (Fucus serratus male)
ATGCTCGCAAACCAGTTTATCGTCGAGGGCATCGTAATCCGGTGTGACGC
CGAAGGCTGGAACCAGGAAAAGATGCTCGCAAACCAGTTTATCGTCGAGG
GCATCGTAATCCGGTGTGACGCCGAAGGCTGGAACCAGGAAAAGGTTGGC
GACAGCGTGTTCCACTCCTGCAAGAAGCCACCGCCGTTGGGCTGTCGTAT
TATCCCGAGCGCCTCGGCCAACAGCTCATCGTCAACGTCCCCCCGGAAGA
TTCCGCGCTCATTCTCCTGGCGGTTCGCTCTCTAGGTTGGCGACAGCGTG
TTCCACTCCTGCAAGAAGCCACCGCCGTTGGGCTGTCGTATTATCCCGAG
CGCCTCGGCCAACAGCTCATCGTCAACGTCCCCCCGGAAGATTCCGCGCT
CATTCTCCTGGCGGTTCGCTCTCTAG
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