mRNA_F-serratus_M_contig818.19584.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig818.19584.1
Unique NamemRNA_F-serratus_M_contig818.19584.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig818.19584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig818contigF-serratus_M_contig818:54037..55588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size164
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932434.7819085-CDS-F-serratus_M_contig818:54036..541181622932434.7819085-CDS-F-serratus_M_contig818:54036..54118Fucus serratus maleCDSF-serratus_M_contig818 54037..54118 +
1690964307.5010319-CDS-F-serratus_M_contig818:54036..541181690964307.5010319-CDS-F-serratus_M_contig818:54036..54118Fucus serratus maleCDSF-serratus_M_contig818 54037..54118 +
1622932434.8021085-CDS-F-serratus_M_contig818:55506..555861622932434.8021085-CDS-F-serratus_M_contig818:55506..55586Fucus serratus maleCDSF-serratus_M_contig818 55507..55586 +
1690964307.5104349-CDS-F-serratus_M_contig818:55506..555861690964307.5104349-CDS-F-serratus_M_contig818:55506..55586Fucus serratus maleCDSF-serratus_M_contig818 55507..55586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig818.19584.1prot_F-serratus_M_contig818.19584.1Fucus serratus malepolypeptideF-serratus_M_contig818 54037..55586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig818.19584.1

>prot_F-serratus_M_contig818.19584.1 ID=prot_F-serratus_M_contig818.19584.1|Name=mRNA_F-serratus_M_contig818.19584.1|organism=Fucus serratus male|type=polypeptide|length=54bp
GRGCAGVKTRGLATKAYRRWRLSQHKRGKRGGPSAPRSSEETSSPRRRRA
LKKR
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mRNA from alignment at F-serratus_M_contig818:54037..55588+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig818.19584.1 ID=mRNA_F-serratus_M_contig818.19584.1|Name=mRNA_F-serratus_M_contig818.19584.1|organism=Fucus serratus male|type=mRNA|length=1552bp|location=Sequence derived from alignment at F-serratus_M_contig818:54037..55588+ (Fucus serratus male)
GGCCGCGGATGCGCTGGCGTGAAGACTCGAGGTCTGGCTACAAAAGCTTA
TCGACGGTGGCGACTCAGCCAGCACAAGAGAGGTGACGTTCATAATTTGT
GAAAAAAAATAAACGTCGCGACACACGGTGGCATGTTCTTGTGTTATTAC
AAAGGCCCCCTCCAATGTGTGACGCTCCCCCTTTTTGCTACTTCTGAACT
GAAAGATTCGAATCTTCCTCGGGATCGAGGCACGCCTACCGGCGGTAGAA
GGACCGCGGATGGCACAGCCTCTGATGTTCAACACGACCCATCCGAGCGC
TACGTAGAGACACCGTTTCTATGATATTAATAGGAGAATATAGTTATTAA
TATTATATATACTAAATACATAAAAAAAATAAAGAAGGGTTGCAGCAGCG
GCTCTCAATAATTTGTGTACACCCTACGGTGTTATGTTTTGCAACTATTT
TAACTTTATATTGAGACCTCCAGGATCGCGCAATACTTTTCTCTGGCGGC
ATGCCCTTATTGTATTACGGAGTATATATTATCTATTATATAACATTCGT
AGCAATAGCAATAGGGGGCGGACATAGAGGGAAAGGCTGAAAATCGAGAT
GCACTTTTAACGGCAAGGGTACTTGCAGGAAATGGATATCGATTTGCTTC
GACGTGGACACAGAACGAGCTCGGTTATGATGGTACGGTTGGGTAGCCCC
TCTCATCTATTCCTTCCTGGCCGTGTTTTACCGTCCCTTACTGTACCGTC
TAATTGTCTTGAAATAGGCCATGTTCTAAGAGTACCATACGTCGGCTGTG
CCGGAAGCTGTGTTGGAAGTGAAGAAAAACCGGTGGCTCAAGCGGGCGAA
TCGAGCCGCCGGGCACGCTCCTGTAACGTCGAGCGGAACTCCTGCCGAGG
CGTTGCCACTTGCTGGTGGGGGAGTGGGCGGGGGCAGAAAGCATGCTGGC
CTAGGATCGAATGCCTTCGGTAGTCCAACTTCTTCTTCGTCCGATGGAGC
CCATCCACCGTGGGACGATGTTCCCGACGGTGGGTGAAAGGGGGCAAACA
GTTTGTTGTTCTGCGGTCGTTTTTTTATCTCGAGGCGCTCTTTCTGATTC
CATTTTTTGTTTTCTTGTTTGTTTTTCCCTAGCTGTAGACCATGTGTGCA
AGAGAGATGCACTTCACTATCTCGGCGACTGTATAGCCGTCTTTCCCCTT
TGAGTGTAAGGGTTGGCTGATGCTGCTGTCTGCAGGGTGCATATTAAAGC
CGGACCATATTAGACGTTTAATACTCCGAAATGAAATAAATGGACCCCCA
AGGCAGTGTTTCAATCGAAGTCCCTCGATAACACAAACGCGCCAGGTGAC
CCCTAAGAGGCGCGGGACAAGACAGGATTAGACATGATTCCCCCTCCCCC
CAACACATGACGATTAGAGCTATGAGAGGAGTAAACAGAGTCTCTGCATG
TACAATCCCTAACGACCCAGGCAAGCGCGGTGGGCCAAGTGCTCCCCGCA
GCAGTGAAGAAACATCATCACCGCGCCGAAGACGCGCTCTTAAGAAGCGC
AT
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Coding sequence (CDS) from alignment at F-serratus_M_contig818:54037..55588+

>mRNA_F-serratus_M_contig818.19584.1 ID=mRNA_F-serratus_M_contig818.19584.1|Name=mRNA_F-serratus_M_contig818.19584.1|organism=Fucus serratus male|type=CDS|length=324bp|location=Sequence derived from alignment at F-serratus_M_contig818:54037..55588+ (Fucus serratus male)
GGCCGCGGATGCGCTGGCGTGAAGACTCGAGGTCTGGCTACAAAAGCTTA
TCGACGGTGGCGACTCAGCCAGCACAAGAGAGGGCCGCGGATGCGCTGGC
GTGAAGACTCGAGGTCTGGCTACAAAAGCTTATCGACGGTGGCGACTCAG
CCAGCACAAGAGAGGCAAGCGCGGTGGGCCAAGTGCTCCCCGCAGCAGTG
AAGAAACATCATCACCGCGCCGAAGACGCGCTCTTAAGAAGCGCGCAAGC
GCGGTGGGCCAAGTGCTCCCCGCAGCAGTGAAGAAACATCATCACCGCGC
CGAAGACGCGCTCTTAAGAAGCGC
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