mRNA_F-serratus_M_contig814.19560.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig814.19560.1
Unique NamemRNA_F-serratus_M_contig814.19560.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig814.19560.1 vs. uniprot
Match: A0A6H5KTJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ7_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 2.830e-57
Identity = 102/169 (60.36%), Postives = 132/169 (78.11%), Query Frame = 1 
Query:   37 QLMSLSAQLYLKDLMMSLKSIAWQRNGGATADMLAGVESRLENFTDDTNSCQDELRRGLVPRLPPVSDMPRVLLKKEEQSHRNECQEREERWEAELKDKLKAAEELRKRLIRRGQRKLPTGGYKWWEDMEATAKSGWLSQEQQATSEFTRRVAVKHGIGVAASLLKRKQ 543
            +LMS +AQ YLK+++  L  +A+QR GG +A++L+GVESRL +        + ELR+ LVPRLP V ++PRV+L+K E++HR EC+EREERW+ EL D L  AEE+RKRLIRRG +KLP G +KWWEDME  AKSGWLS+EQ A SEF RRVAVKHGIGV A+L+K+K+
Sbjct:  495 KLMSFAAQYYLKNILDELAVVAYQRKGGLSAELLSGVESRLRD--PSVKDPKAELRQSLVPRLPSVRNLPRVILEKTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGVVAALMKKKE 661
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BLAST of mRNA_F-serratus_M_contig814.19560.1 vs. uniprot
Match: D8LCB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB6_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 3.470e-57
Identity = 101/165 (61.21%), Postives = 128/165 (77.58%), Query Frame = 1 
Query:   37 QLMSLSAQLYLKDLMMSLKSIAWQRNGGATADMLAGVESRLENFTDDTNSCQDELRRGLVPRLPPVSDMPRVLLKKEEQSHRNECQEREERWEAELKDKLKAAEELRKRLIRRGQRKLPTGGYKWWEDMEATAKSGWLSQEQQATSEFTRRVAVKHGIGVAASLL 531
            +LMSL+AQ YLK+++  L  +A+QR GG +A++L+GVESRL +        + ELR+ LVPRLP V D+PRV L++ E++HR EC+EREERW+ EL D L  AEE+RKRLIRRG +KLP G +KWWEDME  AKSGWLS+EQ A SEF RRVAVKHGIGV A+L+
Sbjct:  294 KLMSLAAQYYLKNMLDELAVVAYQRKGGLSAELLSGVESRLRD--PSVKDPKAELRQSLVPRLPRVQDLPRVTLERTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGVVAALM 456
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig814.19560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTJ7_9PHAE2.830e-5760.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCB6_ECTSI3.470e-5761.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig814contigF-serratus_M_contig814:295165..297683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size618
Cds size618
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig814.19560.1prot_F-serratus_M_contig814.19560.1Fucus serratus malepolypeptideF-serratus_M_contig814 295165..297683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932429.548893-CDS-F-serratus_M_contig814:295164..2953061622932429.548893-CDS-F-serratus_M_contig814:295164..295306Fucus serratus maleCDSF-serratus_M_contig814 295165..295306 +
1690964304.849255-CDS-F-serratus_M_contig814:295164..2953061690964304.849255-CDS-F-serratus_M_contig814:295164..295306Fucus serratus maleCDSF-serratus_M_contig814 295165..295306 +
1622932429.5645962-CDS-F-serratus_M_contig814:296214..2964231622932429.5645962-CDS-F-serratus_M_contig814:296214..296423Fucus serratus maleCDSF-serratus_M_contig814 296215..296423 +
1690964304.8611817-CDS-F-serratus_M_contig814:296214..2964231690964304.8611817-CDS-F-serratus_M_contig814:296214..296423Fucus serratus maleCDSF-serratus_M_contig814 296215..296423 +
1622932429.5785944-CDS-F-serratus_M_contig814:296813..2970111622932429.5785944-CDS-F-serratus_M_contig814:296813..297011Fucus serratus maleCDSF-serratus_M_contig814 296814..297011 +
1690964304.8774993-CDS-F-serratus_M_contig814:296813..2970111690964304.8774993-CDS-F-serratus_M_contig814:296813..297011Fucus serratus maleCDSF-serratus_M_contig814 296814..297011 +
1622932429.5921974-CDS-F-serratus_M_contig814:297614..2976831622932429.5921974-CDS-F-serratus_M_contig814:297614..297683Fucus serratus maleCDSF-serratus_M_contig814 297615..297683 +
1690964304.8870497-CDS-F-serratus_M_contig814:297614..2976831690964304.8870497-CDS-F-serratus_M_contig814:297614..297683Fucus serratus maleCDSF-serratus_M_contig814 297615..297683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig814.19560.1

>prot_F-serratus_M_contig814.19560.1 ID=prot_F-serratus_M_contig814.19560.1|Name=mRNA_F-serratus_M_contig814.19560.1|organism=Fucus serratus male|type=polypeptide|length=206bp
FHVDIHGHGCSRQLMSLSAQLYLKDLMMSLKSIAWQRNGGATADMLAGVE
SRLENFTDDTNSCQDELRRGLVPRLPPVSDMPRVLLKKEEQSHRNECQER
EERWEAELKDKLKAAEELRKRLIRRGQRKLPTGGYKWWEDMEATAKSGWL
SQEQQATSEFTRRVAVKHGIGVAASLLKRKQDQANKHQTRRRGGASGAAS
AGPDLE
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mRNA from alignment at F-serratus_M_contig814:295165..297683+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig814.19560.1 ID=mRNA_F-serratus_M_contig814.19560.1|Name=mRNA_F-serratus_M_contig814.19560.1|organism=Fucus serratus male|type=mRNA|length=2519bp|location=Sequence derived from alignment at F-serratus_M_contig814:295165..297683+ (Fucus serratus male)
TTCCACGTGGACATACATGGACATGGATGCTCCCGACAGCTCATGTCGCT
GTCGGCGCAGCTCTACTTGAAGGATTTGATGATGAGCCTCAAATCGATCG
CCTGGCAGAGAAATGGGGGAGCAACAGCGGATATGCTGGCAGGTGCGGAC
TGGTCGTTGGAAGCGTTCGTACTGCTGTACCTCTAGGGCTCACACAAGTG
CTAAGCGGTATCTCACAAACGGGGATGATGTTGTGTGTTCGGACGGAGGC
GGAGGGAACAAAGTGGCGGTCGAGTTGGTGATCAAAATAAGGTTCAACCC
GATAATGTCATTTTTTTGTGAGAATGACATGTGCTTAGCGAAAACCCTGT
GAATACTATAACCAGAAACCCCTTGGAGGCGTTCAAATGGCTTGATTTTA
TTGAAGGCGGAAGAAAAGCCAAAACATGGGGGTTACACACGTAAACGTAC
CGGATTGAACACTAAAAAAAAAGGGCACTCAATGAATAGCTTGCCAAATC
TCCTTTGCCTAGTTTTGTGAAATGCTGCACTTGGGAACGGGCCAACTTGT
CATGCGTTAGAGGCATCTCTCGAAATATATTTAGTTCTTTGAGTATCTAG
ATATATATATTACAAAAATAGGTGCACTGCTAGACTGCTTCTCGTCGATT
AATTTCTAATGCCCTTACCCGCTACAGCTCAGCGAACCACCACCACTATC
ATGACCGCTGTCAGTGTAGCGGAATTAGCCATCTCCTGGCGTAAAGTAGG
TGCAGTACTGCGGCTCGTACTATTAATAGCAACCAATAGGCGAACCCAGT
TGTCTCCGCCCTGCCAGGCCGGCGGAATCGACCTCACGGTGTTGAATCAG
GCATCATACCCCCCGTCAATCACGCTTGTTCGAACCGGAACTTTTGCTTT
CTGTCTGCTTTGCAAGCGTTTCGTCTCGAACCGGTTCTCTCTCCAGTACA
CTGCAAAATTAGGAATTCATGTCTCTGCGATACTTGATATCTACCTTCTC
TAAACTGAACCATCATATCTCGGTCTGTCTGTCCATCTGTCTGATGTCAG
GGGTTGAGTCTCGACTAGAAAACTTCACAGACGACACGAACTCTTGCCAA
GACGAGCTCCGTCGAGGCCTGGTGCCCCGTCTCCCTCCAGTGAGCGACAT
GCCGAGGGTTCTGCTAAAGAAGGAGGAGCAGTCTCATCGCAACGAATGCC
AGGAAAGGGAGGAGCGATGGGAAGCTGAGCTCAAAGACAAGCTCAAGGCA
GCGGAAGAGGTGCTATACTATTATTTATATTAATGTTAATACGGTAGTTA
CTGGCTAGTTACTGACTGTAGGAGGAAAATAAGGTGTTGTGATGTAGGGT
GGGGGGTATGTAGATGTTATGATTATAACGGTATCATCTTACATGAGGAA
CAAACGAGGTTCTCTTTGCATGGGGATGAGGCGGAGAAAGGCGGCCTGAA
GTTTTGCCGCGCAGGCCGGTTAAGCGGAGTGGAAGGTACTCTGCCCCAAG
CGAGTGATGGAGCGCGTTGTAATCATCCTGGGACTCCTGATGTTGAATGC
TTTTAGTGTGGATAAGGCTCTTTACTCGTTTTGATCGCTCGCGCCGTCAC
TTGCTCGGCGTGCCTCTTTCCCCCGTAAAAAACTCTGTCTGCGATGCAGC
TGCGAAAGCGATTGATCAGACGGGGTCAGAGGAAGCTCCCCACGGGAGGC
TACAAGTGGTGGGAAGACATGGAGGCTACAGCGAAGTCGGGCTGGCTCTC
GCAGGAGCAGCAGGCGACGTCGGAGTTCACTCGGAGGGTGGCGGTCAAGC
ACGGCATCGGGGTGGCTGCGTCCCTTCTGAAGAGGAAACAAGACCAGGTA
CATTTGTCGCTGTCGTTCGACATGCTGTCCAAACTCGCCTTGAAAAGGGG
AGGAGAGGAGAGGAGGACGATGTCTTGTCGGCGGGTACCCCTCGCGAAAG
GCCGGCTCGGCTTGTTTGTGGGGAGGGAGAGAATTTTTGTTTGGCATACA
AAACACGAGCGTGCTTTGTTTGAAGCCTGGTTTCGCTAGATAAGACATTC
TATTCATCGTTCCCCCTCGGAGTTGGTGTAGGTGACCATGATTGGCGGGA
GGTGTAAGCGGCGCTGTATGGTCTCACGCGAGGAGAAGTCGTCGTGTCTC
CTCTTGTTGACGATCTCCGCCGCGGCAGCGACCACCTCCAAACCGCGAAA
CCCCTTTCTTGTTATTTGCGTTTTTCATTGCCAACTCTTGCCGAGCATAT
TCCCTCCTTATTAAATAGTCGAGATTAATAATCCCTCCTCGTTAAACGTT
AGGATCCTGTCCCTGTCCTTTACGTTGATATGAGTCATCCCTTCCTGTCT
TCTACAAACACACACATAATCACTATCAACGACCCCCCCCCCCCTCCACT
CGCCCACCCCTCTCCTACAATCTCCAATGGATTGATGTTGATTGCTGAAG
GCGAACAAACATCAGACTCGCCGTAGGGGTGGAGCCTCGGGAGCTGCCAG
CGCCGGCCCTGATCTCGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig814:295165..297683+

>mRNA_F-serratus_M_contig814.19560.1 ID=mRNA_F-serratus_M_contig814.19560.1|Name=mRNA_F-serratus_M_contig814.19560.1|organism=Fucus serratus male|type=CDS|length=1236bp|location=Sequence derived from alignment at F-serratus_M_contig814:295165..297683+ (Fucus serratus male)
TTCCACGTGGACATACATGGACATGGATGCTCCCGACAGCTCATGTCGCT
GTCGGCGCAGCTCTACTTGAAGGATTTGATGATGAGCCTCAAATCGATCG
CCTGGCAGAGAAATGGGGGAGCAACAGCGGATATGCTGGCAGTTCCACGT
GGACATACATGGACATGGATGCTCCCGACAGCTCATGTCGCTGTCGGCGC
AGCTCTACTTGAAGGATTTGATGATGAGCCTCAAATCGATCGCCTGGCAG
AGAAATGGGGGAGCAACAGCGGATATGCTGGCAGGGGTTGAGTCTCGACT
AGAAAACTTCACAGACGACACGAACTCTTGCCAAGACGAGCTCCGTCGAG
GCCTGGTGCCCCGTCTCCCTCCAGTGAGCGACATGCCGAGGGTTCTGCTA
AAGAAGGAGGAGCAGTCTCATCGCAACGAATGCCAGGAAAGGGAGGAGCG
ATGGGAAGCTGAGCTCAAAGACAAGCTCAAGGCAGCGGAAGAGGGGTTGA
GTCTCGACTAGAAAACTTCACAGACGACACGAACTCTTGCCAAGACGAGC
TCCGTCGAGGCCTGGTGCCCCGTCTCCCTCCAGTGAGCGACATGCCGAGG
GTTCTGCTAAAGAAGGAGGAGCAGTCTCATCGCAACGAATGCCAGGAAAG
GGAGGAGCGATGGGAAGCTGAGCTCAAAGACAAGCTCAAGGCAGCGGAAG
AGCTGCGAAAGCGATTGATCAGACGGGGTCAGAGGAAGCTCCCCACGGGA
GGCTACAAGTGGTGGGAAGACATGGAGGCTACAGCGAAGTCGGGCTGGCT
CTCGCAGGAGCAGCAGGCGACGTCGGAGTTCACTCGGAGGGTGGCGGTCA
AGCACGGCATCGGGGTGGCTGCGTCCCTTCTGAAGAGGAAACAAGACCAG
CTGCGAAAGCGATTGATCAGACGGGGTCAGAGGAAGCTCCCCACGGGAGG
CTACAAGTGGTGGGAAGACATGGAGGCTACAGCGAAGTCGGGCTGGCTCT
CGCAGGAGCAGCAGGCGACGTCGGAGTTCACTCGGAGGGTGGCGGTCAAG
CACGGCATCGGGGTGGCTGCGTCCCTTCTGAAGAGGAAACAAGACCAGGC
GAACAAACATCAGACTCGCCGTAGGGGTGGAGCCTCGGGAGCTGCCAGCG
CCGGCCCTGATCTCGAAGCGAACAAACATCAGACTCGCCGTAGGGGTGGA
GCCTCGGGAGCTGCCAGCGCCGGCCCTGATCTCGAA
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