mRNA_F-serratus_M_contig813.19540.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig813.19540.1
Unique NamemRNA_F-serratus_M_contig813.19540.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig813.19540.1 vs. uniprot
Match: D8LR95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR95_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 4.840e-27
Identity = 52/74 (70.27%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:   73 MSNPSFHHPSLKVLWQAVTSEPMDFQSWTALLSQVEAFGSVGDAQQAYDGFLRQFPLCFGYWRKYASLARRHAA 294
            M++  F  P+L+VLWQAVT +PMDFQ WTALLSQVE+ GS  DA +AYD FLRQFPLCFGYW+KYA+LAR+H A
Sbjct:    1 MTDSPFQAPALQVLWQAVTFDPMDFQCWTALLSQVESVGSSADAHRAYDEFLRQFPLCFGYWKKYANLARKHPA 74
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BLAST of mRNA_F-serratus_M_contig813.19540.1 vs. uniprot
Match: A0A383WHJ6_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WHJ6_TETOB)

HSP 1 Score: 77.8 bits (190), Expect = 4.160e-14
Identity = 41/107 (38.32%), Postives = 58/107 (54.21%), Query Frame = 1 
Query:    7 PLRTELQHRLTEKLGVAEVKFIMSNPSFHHPSLKVLWQAVTSEPMDFQSWTALLSQVEAFGSVGDAQQAYDGFLRQFPLCFGYWRKYASLARRHAARSAIAKSQDRG 327
            P+  E +   TE    A      +NP       + L++AVT +P DF +WT+L+S  E    V   + AYD FL +FPLC+GYW++YA   RRH +  A A   +RG
Sbjct:   17 PVAMEAEANATEAAAAAPEP---ANPLLER--CQELFKAVTEKPDDFNTWTSLISTAEKLDDVQHIRSAYDAFLAEFPLCYGYWKRYAEAERRHGSSEAAAAVLERG 118
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BLAST of mRNA_F-serratus_M_contig813.19540.1 vs. uniprot
Match: UPI000719AB44 (pre-mRNA-processing factor 39-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719AB44)

HSP 1 Score: 75.5 bits (184), Expect = 2.710e-13
Identity = 36/92 (39.13%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:   13 RTELQHRLTEKLGVAEVKFIMSNPSFHHPSLKVLWQAVTSEPMDFQSWTALLSQVEAFGSVGDAQQAYDGFLRQFPLCFGYWRKYASLARRH 288
            + E Q RL E+ G+ E              L   W+AV   P DF  WT LL  VE   ++ +A++A+D FL  +P CFGYW+KYA + +RH
Sbjct:  342 KVERQMRLAEQKGITE--------------LDKFWKAVVENPSDFTGWTYLLQYVEQQNALEEAREAFDDFLDVYPFCFGYWKKYADVEKRH 419
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BLAST of mRNA_F-serratus_M_contig813.19540.1 vs. uniprot
Match: E9HCT1_DAPPU (Uncharacterized protein n=11 Tax=Daphnia TaxID=6668 RepID=E9HCT1_DAPPU)

HSP 1 Score: 75.1 bits (183), Expect = 3.610e-13
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:   97 PSLKVLWQAVTSEPMDFQSWTALLSQVEAFGSVGDAQQAYDGFLRQFPLCFGYWRKYASLARRHAARSAIAKSQDRG 327
            P L+  W+ V   P DFQ+WT+LL  V+    V  A++AYD FLR++P C+GYW+K+A   ++ A +    K  +RG
Sbjct:  174 PDLEKFWRPVIESPKDFQAWTSLLQYVDHENDVAAAREAYDSFLRRYPYCYGYWKKWADYEKKKAMKKDCEKVFERG 250
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BLAST of mRNA_F-serratus_M_contig813.19540.1 vs. uniprot
Match: A0A388LUR0_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LUR0_CHABU)

HSP 1 Score: 74.7 bits (182), Expect = 4.880e-13
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:  112 LWQAVTSEPMDFQSWTALLSQVEAFGSVGDAQQAYDGFLRQFPLCFGYWRKYASLARRHAARSAIAKSQDRGAQG 336
            LW  VT+ P DF SWT L+ + E    +   ++ YD FL +FPLC+GYW+KYA    RH  +  IA+  +R  +G
Sbjct:   47 LWSIVTANPADFTSWTLLIQEAERLDVIDKIRRVYDTFLAEFPLCYGYWKKYADHEGRHGHQEKIAEVYERAVKG 121
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BLAST of mRNA_F-serratus_M_contig813.19540.1 vs. uniprot
Match: A0A0B2W0B0_TOXCA (Pre-mRNA-processing factor 39 n=2 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2W0B0_TOXCA)

HSP 1 Score: 72.4 bits (176), Expect = 3.000e-12
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:  100 SLKVLWQAVTSEPMDFQSWTALLSQVEAFGSVGDAQQAYDGFLRQFPLCFGYWRKYASLARRH 288
            +LK  W+ +   P DF +WT LL  VE       A++AYD FL ++P C+GYWRKYA + RRH
Sbjct:   72 TLKKCWRPLKENPNDFDAWTRLLQCVEQLDETKAAREAYDEFLTRYPYCYGYWRKYAEMERRH 134
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BLAST of mRNA_F-serratus_M_contig813.19540.1 vs. uniprot
Match: A0A183VAA8_TOXCA (Uncharacterized protein n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A183VAA8_TOXCA)

HSP 1 Score: 72.4 bits (176), Expect = 3.010e-12
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:  100 SLKVLWQAVTSEPMDFQSWTALLSQVEAFGSVGDAQQAYDGFLRQFPLCFGYWRKYASLARRH 288
            +LK  W+ +   P DF +WT LL  VE       A++AYD FL ++P C+GYWRKYA + RRH
Sbjct:    3 TLKKCWRPLKENPNDFDAWTRLLQCVEQLDETKAAREAYDEFLTRYPYCYGYWRKYAEMERRH 65
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BLAST of mRNA_F-serratus_M_contig813.19540.1 vs. uniprot
Match: A0A7S0VQJ0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0VQJ0_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 3.080e-12
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  112 LWQAVTSEPMDFQSWTALLSQVEAFGSVGDAQQAYDGFLRQFPLCFGYWRKYA 270
            LW +VTS+P DF SWTA L+ VE    +   +  YD FL ++PLC+GYW+KYA
Sbjct:   27 LWSSVTSDPSDFSSWTAALTAVEKLNDMDKLRSVYDAFLTEYPLCYGYWKKYA 79
[Close]
BLAST of mRNA_F-serratus_M_contig813.19540.1 vs. uniprot
Match: A0A3P8VAH3_CYNSE (Pre-mRNA-processing factor 39-like n=3 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8VAH3_CYNSE)

HSP 1 Score: 72.4 bits (176), Expect = 3.100e-12
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:   82 PSFHHPSLKVLWQAVTSEPMDFQSWTALLSQVEAFGSVGDAQQAYDGFLRQFPLCFGYWRKYASLARR 285
            P FH      LW+AVT  P DF SWT LL   E    V  ++QA + FL ++PLC+GYW+K+A L RR
Sbjct:   41 PEFHR-----LWKAVTDNPFDFTSWTELLQYCEQENHVTASRQALEAFLARYPLCYGYWKKFADLERR 103
[Close]
BLAST of mRNA_F-serratus_M_contig813.19540.1 vs. uniprot
Match: A0A2Z7BCK2_9LAMI (Pre-mRNA-processing factor 39-like n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BCK2_9LAMI)

HSP 1 Score: 72.0 bits (175), Expect = 4.310e-12
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:  112 LWQAVTSEPMDFQSWTALLSQVEAF--GSVGDAQQAYDGFLRQFPLCFGYWRKYASLARRHAARSAIAKSQDRGAQG 336
            LW  VT+  MDF +WT+L+ + E    G++   Q+ YD FL +FPLC+GYW+KYA    R ++   +A+  +R  QG
Sbjct:  136 LWSIVTTNSMDFNAWTSLVEETERISEGNINKIQKVYDTFLAEFPLCYGYWKKYADHVARLSSVDKVAEVYERAVQG 212
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig813.19540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR95_ECTSI4.840e-2770.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A383WHJ6_TETOB4.160e-1438.32Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
UPI000719AB442.710e-1339.13pre-mRNA-processing factor 39-like n=1 Tax=Priapul... [more]
E9HCT1_DAPPU3.610e-1341.56Uncharacterized protein n=11 Tax=Daphnia TaxID=666... [more]
A0A388LUR0_CHABU4.880e-1342.67Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A0B2W0B0_TOXCA3.000e-1247.62Pre-mRNA-processing factor 39 n=2 Tax=Toxocara can... [more]
A0A183VAA8_TOXCA3.010e-1247.62Uncharacterized protein n=1 Tax=Toxocara canis Tax... [more]
A0A7S0VQJ0_9CHLO3.080e-1252.83Hypothetical protein (Fragment) n=1 Tax=Polytomell... [more]
A0A3P8VAH3_CYNSE3.100e-1248.53Pre-mRNA-processing factor 39-like n=3 Tax=Cynoglo... [more]
A0A2Z7BCK2_9LAMI4.310e-1241.56Pre-mRNA-processing factor 39-like n=1 Tax=Dorcoce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig813contigF-serratus_M_contig813:144268..146219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue1.8e-23
Seed eggNOG ortholog2880.D8LR95
KEGG koko:K13217,ko:K20123
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA 5'-splice site recognition
EggNOG OGsKOG1258@1,KOG1258@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041,ko04131
Exons4
Model size396
Cds size393
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig813.19540.1prot_F-serratus_M_contig813.19540.1Fucus serratus malepolypeptideF-serratus_M_contig813 144268..146217 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932424.6397772-CDS-F-serratus_M_contig813:144267..1443331622932424.6397772-CDS-F-serratus_M_contig813:144267..144333Fucus serratus maleCDSF-serratus_M_contig813 144268..144333 +
1690964302.5992618-CDS-F-serratus_M_contig813:144267..1443331690964302.5992618-CDS-F-serratus_M_contig813:144267..144333Fucus serratus maleCDSF-serratus_M_contig813 144268..144333 +
1622932424.6571426-CDS-F-serratus_M_contig813:144349..1444571622932424.6571426-CDS-F-serratus_M_contig813:144349..144457Fucus serratus maleCDSF-serratus_M_contig813 144350..144457 +
1690964302.609866-CDS-F-serratus_M_contig813:144349..1444571690964302.609866-CDS-F-serratus_M_contig813:144349..144457Fucus serratus maleCDSF-serratus_M_contig813 144350..144457 +
1622932424.679895-CDS-F-serratus_M_contig813:145612..1457021622932424.679895-CDS-F-serratus_M_contig813:145612..145702Fucus serratus maleCDSF-serratus_M_contig813 145613..145702 +
1690964302.6185277-CDS-F-serratus_M_contig813:145612..1457021690964302.6185277-CDS-F-serratus_M_contig813:145612..145702Fucus serratus maleCDSF-serratus_M_contig813 145613..145702 +
1622932424.6996386-CDS-F-serratus_M_contig813:146088..1462171622932424.6996386-CDS-F-serratus_M_contig813:146088..146217Fucus serratus maleCDSF-serratus_M_contig813 146089..146217 +
1690964302.6284356-CDS-F-serratus_M_contig813:146088..1462171690964302.6284356-CDS-F-serratus_M_contig813:146088..146217Fucus serratus maleCDSF-serratus_M_contig813 146089..146217 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig813.19540.1

>prot_F-serratus_M_contig813.19540.1 ID=prot_F-serratus_M_contig813.19540.1|Name=mRNA_F-serratus_M_contig813.19540.1|organism=Fucus serratus male|type=polypeptide|length=131bp
PNPLRTELQHRLTEKLGVAEVKFIMSNPSFHHPSLKVLWQAVTSEPMDFQ
SWTALLSQVEAFGSVGDAQQAYDGFLRQFPLCFGYWRKYASLARRHAARS
AIAKSQDRGAQGGEDAAGPSVGAAAESMEVA
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mRNA from alignment at F-serratus_M_contig813:144268..146219+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig813.19540.1 ID=mRNA_F-serratus_M_contig813.19540.1|Name=mRNA_F-serratus_M_contig813.19540.1|organism=Fucus serratus male|type=mRNA|length=1952bp|location=Sequence derived from alignment at F-serratus_M_contig813:144268..146219+ (Fucus serratus male)
CCTAACCCCCTCCGGACCGAACTCCAGCATAGACTGACGGAAAAGCTTGG
AGTTGCCGAGGTGAAGATTTAGCGGGGAAAATTTTATCATGAGTAACCCT
TCCTTCCACCATCCTTCCTTGAAGGTTCTCTGGCAGGCGGTTACTTCCGA
ACCCATGGACTTTCAGTCGTGGACGGCTCTCTTGTCGCAGGTGAAGTCTT
CCACTGTCTGTAACTGTGTAGGGAGACATTTGCGCTTGTGTCTCTCATCT
ACGTCCAGCCTCTCTTTGGGACTCGGAGGATACGCAAGAGCGGGTAGTCT
TCCTCTTGCAAGTTGACGTGACAGCATCTTCCTCGCCGATTGTGATTGAC
AATCTTGCTGCGCGCAAGTGGATTGTGGCTTTGTTTAGAAGAGCCCTATA
CTACTACACATGAACATATATCTTCATAGCAACAGAGAGAAGGAAGCCCC
AACCTGCAAACCGCCGAATAACGTCTTGAACGTTTTTGAAGGTCAAGTTC
AACCCGAAGCCACGTCTTCTATCAACATACCCACTTCATACCAATAATAG
TATAGTGGGTGTGCGAAAAGAGAGGTGCACATTAATTGGTCATAGTCCAT
GGTGACCTGCAAAATGGCAGCACCCGTTACTGGAACTACCTTGAGGACTA
CTGGCCCTGTGCCAGCGGACTCTCAGGAGTGAACGTCGTCGGTACGCAAT
TGCGTGACCCGATAAACTCGGGACTGACCCGATGACGTATGGCGGTTTAA
AAAAATAAATCGACGCCGACGCCGAAATCAGGAGGAATCTCGTGAGTACG
CACCTTCAGACTGAGTATGGAGAATAAGCAGGCTTACGCAGGACGGGACG
GCTGAACCCGTCTCGCGAGGCCAAATTCTCAGGCGCGTACGGGGACAGGG
AAATTTTCATTTTCCCTGTTCAGCTGACCACGAGTAGAGCAGGATTGGCA
ACCTTACCCGGTTGATCCATGCTCTCTAATATATGTGATGACCATACATA
CATGCATGTATACACCCCTTTGTACACCAGGTAAGGTGCGAAGGATTTGC
TACCGTACAGCGCAGCGGTACTCGCAAGGCTTAGAGCGCGGCACTTGTTG
TGCTGCTAGTCATCCTATAGAAGCGGTTTCTGGTCGCTCGACGCAATCTT
ACCCAGTAGGTTTAAATTTAAAATAAGCTCGAAAACCGAGCACCAATACT
GCTAAGAGCTCCAGACAACTGTTGTTTGCAGAAGGAACGCCTCTGTTAAG
ATTATGTATAGAAACAACGATTGCACTTCAACCGCGACGTCAAGATGGCT
CGGCTGTTGTTGACGTTCCGCCATCCCGTCTGTCCTGCCCATCAGGTAGA
GGCCTTCGGCTCGGTGGGGGACGCTCAACAAGCGTACGATGGCTTCCTCC
GTCAGTTTCCGCTCTGTTTCGGATACTGGAGAAAGGTGAGAGACGGATGG
ATTTTTCTTTCACAGAGTTAAAAACGAACATATCGACGACAGTCAGCGCA
TCATATTATGCTGTTTTGATATAATTGTCAAGAGTAGCACCCGAATGTTG
ATCGCTACAGTTACAGTAGCACCAGTAGCTGCAGAGCGATTTTTTTACTG
TACAGATTCAGTAGCCGTGATCTCTTCGATGCGGCGTGTTGAAGCCGGAA
TGGAATGCTTTACAACCGTTCAGACTTTCCGGCCATCGACTCATCTCGTG
CCGTTTGTATCGGTTCAGTGCAGTACATTGCAGCACCCAAGACGATCTTG
CAATTGCATGCTGTATTCATAATGATACTGCAGTCATTTTATACCTGCCA
AATACAAAACTCCCCCGGCAGTACGCCAGTCTAGCGCGCAGACACGCAGC
GCGGTCAGCAATCGCCAAGAGCCAGGATCGTGGCGCTCAGGGAGGTGAGG
ACGCCGCGGGTCCTTCAGTGGGAGCGGCAGCGGAGAGTATGGAAGTCGCG
GC
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Coding sequence (CDS) from alignment at F-serratus_M_contig813:144268..146219+

>mRNA_F-serratus_M_contig813.19540.1 ID=mRNA_F-serratus_M_contig813.19540.1|Name=mRNA_F-serratus_M_contig813.19540.1|organism=Fucus serratus male|type=CDS|length=786bp|location=Sequence derived from alignment at F-serratus_M_contig813:144268..146219+ (Fucus serratus male)
CCTAACCCCCTCCGGACCGAACTCCAGCATAGACTGACGGAAAAGCTTGG
AGTTGCCGAGGTGAAGCCTAACCCCCTCCGGACCGAACTCCAGCATAGAC
TGACGGAAAAGCTTGGAGTTGCCGAGGTGAAGTTTATCATGAGTAACCCT
TCCTTCCACCATCCTTCCTTGAAGGTTCTCTGGCAGGCGGTTACTTCCGA
ACCCATGGACTTTCAGTCGTGGACGGCTCTCTTGTCGCAGTTTATCATGA
GTAACCCTTCCTTCCACCATCCTTCCTTGAAGGTTCTCTGGCAGGCGGTT
ACTTCCGAACCCATGGACTTTCAGTCGTGGACGGCTCTCTTGTCGCAGGT
AGAGGCCTTCGGCTCGGTGGGGGACGCTCAACAAGCGTACGATGGCTTCC
TCCGTCAGTTTCCGCTCTGTTTCGGATACTGGAGAAAGGTAGAGGCCTTC
GGCTCGGTGGGGGACGCTCAACAAGCGTACGATGGCTTCCTCCGTCAGTT
TCCGCTCTGTTTCGGATACTGGAGAAAGTACGCCAGTCTAGCGCGCAGAC
ACGCAGCGCGGTCAGCAATCGCCAAGAGCCAGGATCGTGGCGCTCAGGGA
GGTGAGGACGCCGCGGGTCCTTCAGTGGGAGCGGCAGCGGAGAGTATGGA
AGTCGCGTACGCCAGTCTAGCGCGCAGACACGCAGCGCGGTCAGCAATCG
CCAAGAGCCAGGATCGTGGCGCTCAGGGAGGTGAGGACGCCGCGGGTCCT
TCAGTGGGAGCGGCAGCGGAGAGTATGGAAGTCGCG
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