mRNA_F-serratus_M_contig8124.19530.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8124.19530.1
Unique NamemRNA_F-serratus_M_contig8124.19530.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig8124.19530.1 vs. uniprot
Match: D7FK91_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK91_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 8.320e-36
Identity = 64/101 (63.37%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:    1 GCYTLCEKCFSERRRFHPPHPFARLGACFADARLSSPVLYEAVCGDCLFGSLVLVRPIKMREVVVGQSKCSGVGRAGNHDIWAVPIRVEASGPLPLYQVRS 303
            G YTLCE CF  R +FHPPHPFARL   FA+ RLS PVLYEAVCGDC FGSL+LVRP+K RE   G +   G G  G  D+WAVP+RV+++GPLPL Q R+
Sbjct:  267 GFYTLCEACFPYRHQFHPPHPFARLRPGFAEPRLSGPVLYEAVCGDCSFGSLILVRPLKAREAAPGDT---GSGDGG--DLWAVPVRVDSAGPLPLSQARN 362
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8124.19530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK91_ECTSI8.320e-3663.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8124contigF-serratus_M_contig8124:1..1087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003210.1
Exons3
Model size372
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8124.19530.1prot_F-serratus_M_contig8124.19530.1Fucus serratus malepolypeptideF-serratus_M_contig8124 1..1087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932422.386757-CDS-F-serratus_M_contig8124:0..1281622932422.386757-CDS-F-serratus_M_contig8124:0..128Fucus serratus maleCDSF-serratus_M_contig8124 1..128 +
1690964301.59673-CDS-F-serratus_M_contig8124:0..1281690964301.59673-CDS-F-serratus_M_contig8124:0..128Fucus serratus maleCDSF-serratus_M_contig8124 1..128 +
1622932422.398285-CDS-F-serratus_M_contig8124:673..8391622932422.398285-CDS-F-serratus_M_contig8124:673..839Fucus serratus maleCDSF-serratus_M_contig8124 674..839 +
1690964301.6082518-CDS-F-serratus_M_contig8124:673..8391690964301.6082518-CDS-F-serratus_M_contig8124:673..839Fucus serratus maleCDSF-serratus_M_contig8124 674..839 +
1622932422.4095142-CDS-F-serratus_M_contig8124:1009..10871622932422.4095142-CDS-F-serratus_M_contig8124:1009..1087Fucus serratus maleCDSF-serratus_M_contig8124 1010..1087 +
1690964301.6173236-CDS-F-serratus_M_contig8124:1009..10871690964301.6173236-CDS-F-serratus_M_contig8124:1009..1087Fucus serratus maleCDSF-serratus_M_contig8124 1010..1087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8124.19530.1

>prot_F-serratus_M_contig8124.19530.1 ID=prot_F-serratus_M_contig8124.19530.1|Name=mRNA_F-serratus_M_contig8124.19530.1|organism=Fucus serratus male|type=polypeptide|length=124bp
GCYTLCEKCFSERRRFHPPHPFARLGACFADARLSSPVLYEAVCGDCLFG
SLVLVRPIKMREVVVGQSKCSGVGRAGNHDIWAVPIRVEASGPLPLYQVR
SRIAAGDRDDNRGLAFASEKWRPQ
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mRNA from alignment at F-serratus_M_contig8124:1..1087+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8124.19530.1 ID=mRNA_F-serratus_M_contig8124.19530.1|Name=mRNA_F-serratus_M_contig8124.19530.1|organism=Fucus serratus male|type=mRNA|length=1087bp|location=Sequence derived from alignment at F-serratus_M_contig8124:1..1087+ (Fucus serratus male)
GGGTGTTACACGCTCTGCGAGAAATGTTTCTCGGAGAGGCGTCGATTTCA
CCCTCCGCATCCGTTCGCTCGGCTTGGGGCTTGCTTCGCGGATGCCCGTC
TCTCGAGTCCAGTGCTGTACGAAGCCGTGTGAGTTGAGCTCTTTCTCGCG
GCTGTGTGAGTTTGCTAAATAGAGGTGAAGGCGTTATCCCTCCTCCCATT
ATTAGGTATATTTTGCTCCTTCTTTCAGGTGGTGCAGGGGTGGGGGTATT
TATAATATATATACATATATATATATATGTACATATTGCTATATGTGTGA
CCATACATACATACATACTATAATATGTATTGCATGTGATGCGTAGTCAA
ATCGGTAGACACTTGTATACGCAGCGTTGATGCGTGTACCAAATACCTCG
GAGGATGTTCCCCGATAAAAACTTGGTACCTGCATACCAAAGCACCCTCG
CTTACCGCGAACATGTGGACACCACATGGCAGCCAATTCTACCAAGTTGT
AGTTTCTCGCCCCCCCCCATATTGCAGCAACAGTCAATGTTATCCCCGTC
AGAAAATGTAAATGTATATACCGTTACTATTTAGAGACCATTTTGACCTG
GGTACATACCGGCGCCTCTGGAAGGTTGATTTGACCGATTTTCGTTTCGA
TGTCGGTCTCGCTGCTTTCTCAGGTGTGGTGATTGCTTGTTCGGATCGTT
GGTCCTGGTTCGGCCAATCAAGATGCGCGAGGTTGTTGTTGGCCAATCAA
AGTGCAGCGGCGTCGGCAGGGCTGGAAACCACGATATTTGGGCTGTACCC
ATTCGCGTGGAGGCGTCCGGGCCGCTGCCTCTGTATCAGGTACATTCCAC
ACGTACGTGATCACGCGCTGATGTTCGTTGATACACCTGCGTCCTGGGGT
ATGATGAGATCCTTTTCCCGCTTTGAATGCGGTGATTGTGTCGCCCAACC
CGGCCAATCTCGCGACATCGCACCTGATCTCCTCCTCTGTCGTTACTGTT
TTCGGGCAGGTCAGAAGCCGCATTGCTGCCGGCGATCGGGACGACAACCG
AGGCCTAGCCTTCGCCTCGGAGAAATGGCGTCCGCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig8124:1..1087+

>mRNA_F-serratus_M_contig8124.19530.1 ID=mRNA_F-serratus_M_contig8124.19530.1|Name=mRNA_F-serratus_M_contig8124.19530.1|organism=Fucus serratus male|type=CDS|length=744bp|location=Sequence derived from alignment at F-serratus_M_contig8124:1..1087+ (Fucus serratus male)
GGGTGTTACACGCTCTGCGAGAAATGTTTCTCGGAGAGGCGTCGATTTCA
CCCTCCGCATCCGTTCGCTCGGCTTGGGGCTTGCTTCGCGGATGCCCGTC
TCTCGAGTCCAGTGCTGTACGAAGCCGTGGGTGTTACACGCTCTGCGAGA
AATGTTTCTCGGAGAGGCGTCGATTTCACCCTCCGCATCCGTTCGCTCGG
CTTGGGGCTTGCTTCGCGGATGCCCGTCTCTCGAGTCCAGTGCTGTACGA
AGCCGTGTGTGGTGATTGCTTGTTCGGATCGTTGGTCCTGGTTCGGCCAA
TCAAGATGCGCGAGGTTGTTGTTGGCCAATCAAAGTGCAGCGGCGTCGGC
AGGGCTGGAAACCACGATATTTGGGCTGTACCCATTCGCGTGGAGGCGTC
CGGGCCGCTGCCTCTGTATCAGGTGTGGTGATTGCTTGTTCGGATCGTTG
GTCCTGGTTCGGCCAATCAAGATGCGCGAGGTTGTTGTTGGCCAATCAAA
GTGCAGCGGCGTCGGCAGGGCTGGAAACCACGATATTTGGGCTGTACCCA
TTCGCGTGGAGGCGTCCGGGCCGCTGCCTCTGTATCAGGTCAGAAGCCGC
ATTGCTGCCGGCGATCGGGACGACAACCGAGGCCTAGCCTTCGCCTCGGA
GAAATGGCGTCCGCAAGTCAGAAGCCGCATTGCTGCCGGCGATCGGGACG
ACAACCGAGGCCTAGCCTTCGCCTCGGAGAAATGGCGTCCGCAA
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