mRNA_F-serratus_M_contig811.19519.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig811.19519.1
Unique NamemRNA_F-serratus_M_contig811.19519.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig811.19519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig811contigF-serratus_M_contig811:342727..343615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size889
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig811.19519.1prot_F-serratus_M_contig811.19519.1Fucus serratus malepolypeptideF-serratus_M_contig811 342964..343413 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932420.3241127-UTR-F-serratus_M_contig811:342726..3429631622932420.3241127-UTR-F-serratus_M_contig811:342726..342963Fucus serratus maleUTRF-serratus_M_contig811 342727..342963 +
1690964300.4476988-UTR-F-serratus_M_contig811:342726..3429631690964300.4476988-UTR-F-serratus_M_contig811:342726..342963Fucus serratus maleUTRF-serratus_M_contig811 342727..342963 +
1622932420.3604786-UTR-F-serratus_M_contig811:343413..3436151622932420.3604786-UTR-F-serratus_M_contig811:343413..343615Fucus serratus maleUTRF-serratus_M_contig811 343414..343615 +
1690964300.4745731-UTR-F-serratus_M_contig811:343413..3436151690964300.4745731-UTR-F-serratus_M_contig811:343413..343615Fucus serratus maleUTRF-serratus_M_contig811 343414..343615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932420.3455465-CDS-F-serratus_M_contig811:342963..3434131622932420.3455465-CDS-F-serratus_M_contig811:342963..343413Fucus serratus maleCDSF-serratus_M_contig811 342964..343413 +
1690964300.4636056-CDS-F-serratus_M_contig811:342963..3434131690964300.4636056-CDS-F-serratus_M_contig811:342963..343413Fucus serratus maleCDSF-serratus_M_contig811 342964..343413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig811.19519.1

>prot_F-serratus_M_contig811.19519.1 ID=prot_F-serratus_M_contig811.19519.1|Name=mRNA_F-serratus_M_contig811.19519.1|organism=Fucus serratus male|type=polypeptide|length=150bp
MPSKWALKRKCHNAAPSSFFGNLGTGRFLPLQNKLAVVVPCLHDASGPAR
PSTVCLHDASGPARPSASPASFTREALSAPSAAPLNAAISACEASRARRR
SSTVSILYCTQKVVQSVDYETRSPYAMCLFSLEKALVRLPQHSQCILLE*
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mRNA from alignment at F-serratus_M_contig811:342727..343615+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig811.19519.1 ID=mRNA_F-serratus_M_contig811.19519.1|Name=mRNA_F-serratus_M_contig811.19519.1|organism=Fucus serratus male|type=mRNA|length=889bp|location=Sequence derived from alignment at F-serratus_M_contig811:342727..343615+ (Fucus serratus male)
TTTTCGGCTTCACTCGAAGGGCCGGTCCAATTCAAAACCTGGGACCATGC
ATCTCTTACGGTCATGGCCGACAGCACTCTGTCTTCAAATGCAGCTCCCG
CGGTGGCATCCAGAAGACATGCCCATGCCGCTTGTGCTTGCTGCACCGGC
TCCTCCCCGTACTGCAAAATCAATTCACGTTGGTTCCCCTTCACAGGGAC
AGAAGTATCCGTCTGATCCAACGTGTACCCCAGACCCATGCCATCCAAGT
GGGCCCTAAAACGCAAATGCCACAACGCGGCTCCATCTTCATTTTTTGGG
AATTTAGGGACCGGGCGATTTCTACCGCTCCAAAACAAACTTGCTGTGGT
CGTACCTTGTCTCCATGATGCATCGGGCCCAGCACGCCCATCAACTGTCT
GTCTCCATGATGCATCGGGCCCAGCACGCCCATCAGCTTCGCCTGCGTCG
TTCACTCGAGAGGCCCTATCCGCTCCCTCAGCTGCACCCCTCAATGCTGC
TATCTCAGCCTGTGAGGCTTCGAGAGCACGACGTAGGTCCTCCACAGTTT
CCATTTTGTACTGTACACAAAAAGTTGTACAAAGTGTAGATTACGAAACT
AGATCACCTTATGCAATGTGTTTGTTTTCGCTCGAGAAGGCCCTTGTCCG
CCTACCTCAGCATTCGCAGTGTATATTGCTCGAGTAGCCCTTAACCGCTC
CCTCAGCTTATTTTGCAGTCCTTTCCACTGCTCTCCACGGTTTCCAATCC
CGCTGTACCGGATAAGACTTGCAAGCCCTTCCCCTGAACTATACGATATC
GTGTTCGTGGCTGTTTGTGAGGCCTCGGGTGTCCATACGTTACCACCCTG
TTTATGTAGTTCCGGCGGGTGACCAGACGTTAACACCCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig811:342727..343615+

>mRNA_F-serratus_M_contig811.19519.1 ID=mRNA_F-serratus_M_contig811.19519.1|Name=mRNA_F-serratus_M_contig811.19519.1|organism=Fucus serratus male|type=CDS|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig811:342727..343615+ (Fucus serratus male)
ATGCCATCCAAGTGGGCCCTAAAACGCAAATGCCACAACGCGGCTCCATC
TTCATTTTTTGGGAATTTAGGGACCGGGCGATTTCTACCGCTCCAAAACA
AACTTGCTGTGGTCGTACCTTGTCTCCATGATGCATCGGGCCCAGCACGC
CCATCAACTGTCTGTCTCCATGATGCATCGGGCCCAGCACGCCCATCAGC
TTCGCCTGCGTCGTTCACTCGAGAGGCCCTATCCGCTCCCTCAGCTGCAC
CCCTCAATGCTGCTATCTCAGCCTGTGAGGCTTCGAGAGCACGACGTAGG
TCCTCCACAGTTTCCATTTTGTACTGTACACAAAAAGTTGTACAAAGTGT
AGATTACGAAACTAGATCACCTTATGCAATGTGTTTGTTTTCGCTCGAGA
AGGCCCTTGTCCGCCTACCTCAGCATTCGCAGTGTATATTGCTCGAGTAG
ATGCCATCCAAGTGGGCCCTAAAACGCAAATGCCACAACGCGGCTCCATC
TTCATTTTTTGGGAATTTAGGGACCGGGCGATTTCTACCGCTCCAAAACA
AACTTGCTGTGGTCGTACCTTGTCTCCATGATGCATCGGGCCCAGCACGC
CCATCAACTGTCTGTCTCCATGATGCATCGGGCCCAGCACGCCCATCAGC
TTCGCCTGCGTCGTTCACTCGAGAGGCCCTATCCGCTCCCTCAGCTGCAC
CCCTCAATGCTGCTATCTCAGCCTGTGAGGCTTCGAGAGCACGACGTAGG
TCCTCCACAGTTTCCATTTTGTACTGTACACAAAAAGTTGTACAAAGTGT
AGATTACGAAACTAGATCACCTTATGCAATGTGTTTGTTTTCGCTCGAGA
AGGCCCTTGTCCGCCTACCTCAGCATTCGCAGTGTATATTGCTCGAGTAG
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