mRNA_F-serratus_M_contig81.19506.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig81.19506.1 vs. uniprot
Match: D8LF16_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF16_ECTSI) HSP 1 Score: 980 bits (2533), Expect = 0.000e+0 Identity = 759/1939 (39.14%), Postives = 951/1939 (49.05%), Query Frame = 1
Query: 1 LGELRSRRESRVSSSPAVVMDLPSSAMDDPSPFVPPSQYQVRLNRSKGLGISIDITGNDVRVKGFPLLPGGEIGPAQACGQIQA-NALVCVNHDQLTLLNHDSVVRVLRGLLSNNADQLVLMRFLYAEDSSAPSLL---------------PTRSVPISSAAMKHQSSVEASEVMRGG-----RFRSESWHGSRN---AGDTQRQQQEHLKIERRHSHSQGDSAEDSPTLGSG----MDGXXXXXXXXXXXXXXXD----TTDGSRGRDKIRLERLWGESDKGFGKGGGVNRHVYLGDMGLAQAQKTLSDIAQDVQVRYYFLYAESPPPLPKELYRGRRRXXXXXXRSSLRFPGLYGAPGKPGVGALG-----------GGVRRAIDLPTCREVIRGELGRLEKDLKQQEEMLARRNQWSTVRGLVSKLVRSSNRSAVPNRPPLSPLSPTCSPNTRASNSNSDIAALKGRHSTSLRARGTPRADVAHGYW----SDG-LSDSDGSASSTAL--------------DGRGRGRKGDTSDGPSKLLGVDVAERDETDT---VCDIFLEAVSTEGMQDEFLQTVSLEVLGVDPPRPLPAAAYDLQTALESVQHLATQTLSAVVQAEAVRG-----RTQEFFASGLSPRGMGGGYRA-----AKEAKEAAAAAGLRDGWEMLWPPRKLTASLALVTARQMANTMRCDAEPLIQIWMRCFTPLAVKHRERLWGALAPTP-LDSLEVFHGRWHRQLVCGLVTLFAQVHISWPFLGRPSDDP---GLNSLKLKTRWLSAYVSASNQQG------------------GDGLSVHDWPTEDGGDNDIDEQFVEDAADRNGISVPHQWYEDKTVGFIQDYGCYLEADALAAAVSCREMEWPLREVFSLAEQSGDFRARERILHQLLRGVRTP--------------------LPLSPTASSVSPLLRSPVSTPGNRTPTVVSPRSPAFKDKRVSPSAVNAA----------------LMDQAQPPGVVEEEAVRRALGLPGRSVDASAARLGRDFPSERASPQRPEG------EKGSE-------SDDPLGSSPLCLLLKNLGELFKWDTAAAADICADAFPGVRPWNVHCALHQEQGEAWSSVEPPTPRPEGANIRTSSGTTANTSAKYFMGD-DSATRNDAVFQAYLWAMMEKHPTECRNDRKMVQRCLQLSLRLSTKLRSKSPDHPLVGFCKSATRSVKCRRRTNYGPSEVVQTEAFPLERGQSSANPGTSRPSRR------SGSVTSRKIYPVGD---GVND-----DNAVWRLYSEMVQHVVCAWCRDNSAYDLDPLWLLTKLRAHRDWSVAFQVCAAEARSWEK-----HASSHGSLADIAGCLPLSGAMSA-------SIGTVFDTLADACFASFEEADTKILAVAIAAIWSADGAIRRTYGRSLDEAVRALKVTDENDQEEAQSPGEEVDKVDIAVES---------------------------------GDESKNLSRPARESSRPTSSNSSDWLAGSQMLDIVRRLTPRCEGLGLRLQ-----HRDEGTVS---------TIAGGMDTRTATE-----------------------VSPLELAKTILDGVGPETTISVMEACPELLDNLPPKFFHALADRQAALLQQQALETELLKQAITAVRAARGRASGYSYNSGGAAGDSTRKKSTPAASGYWLDDRAKLSPLGTRLAWLALEELTSFFPQDRDKLALPYLSDSKDTSETSDLSAGATAKTEGVASYEE------------EPLTQAVNRSG-------------------------------INLLLPKSTHRGVSLRPYSPCLLCGIPLAGTACSISVASPVGRDVAGFRGSSGGVTRDKGGVMPPGGEELQVVVEACGHGFHVACVEEGLEGAGAKGWREAW 4959
+G LRSRRESR+ + V +LP SAMDDP+PFVPPSQY+VRLN S+GLG+S++ITGNDVRVKGF + GG+IGPAQACG IQ +ALV VNH+QL LLNH++VVRVLRGLL Q++L+RF YAEDS P LL P VP S +S S GG FRSESWHGS A + Q Q +E + H + G + S +LG G + G + T DG R R K R E LWGE + G G G +RH+YLGDMG A+ Q+TL IA+DVQ PPPLP+ELYRGR XXXXXX GGV I+L +C+ V++ E+ RLE +L++Q LARRN+ S+ R LV+K++ SA+ S SP SP R S A R S+ G + G SDG L+DS S T G G+G G + D CDIFLEAVST G+QDE L +EVLGVDPPRPLPAAAYDLQTALESVQH ATQTL+ VVQA AVRG + + SPR + GG RA AKEA+E AAGL + WE WPPR+LTA+L LVTARQMA+ MRCD EPLIQIWMRCFTP+ KHR +LWG LAP P ++ + GRWHRQLVCGL+TL+AQVH+SWPFL RP DDP GL SL+L+T W G G + W GG A R P QW E+K VGFIQDYG YLE DA+AAA SCREMEW L EV LAEQ D++++ER+LHQLLRG RTP +P S + + + TPGN TPT++SP AF ++ A++A +D A G +EE+AVR+ALGL D + + + A+ + +G E G + G +PLCLLL NL ELF+WD AAAA++CADAFPGVRPWNVH ALH++Q + W++ EP TP G + A A GD D TR DA F AYLWA++ KHP ECR D K++QRCLQLSLRLSTKLRS DHPL FCK+ATR+ K RRR + + +T E S+ G SRR SG + + P GD GV D D + WR YS++V+ +V WC+ A+ LDPLWLL KLRAH++W VAF++C A A SWE+ H S G ++ G S VFDTLADACFA+F + DT+ LA A+ W+ADGA+RR R+ +R D SPG++ ++VE G S A+E W+ S+M+D+VR L RC G + + D G + GG D A+E A+ +LDGVGPE T V+ ACP LL+ +PPKFF LADRQAAL QQ+ALE LL QA A+ A+RG R+++T +G D + SPLG RLAWLA EELTSFF QD A + E + G+ + + L++ N SG +NL+LP + HRG + P SPC CG+ L+G GGV D GG G ++V+ ACG G H C+ A GW W
Sbjct: 15 MGTLRSRRESRIPTHLVTVTELPVSAMDDPNPFVPPSQYEVRLNVSRGLGLSLNITGNDVRVKGFSTVQGGDIGPAQACGDIQVGDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDS--PRLLRATTXXXXXXXXXLPPKTRVPRPSTMENPRSEPRVSH---GGLDTEEAFRSESWHGSSKPPRAREGQGQGREMARSVSPHRRT-GPAVLRSQSLGEGGPPTVAGFARKGSGAEAGHKEGEWEGWTVDGMRPRGKRRGE-LWGEPELGLAGGDGGSRHIYLGDMGHARVQRTLQAIAEDVQ---------PPPPLPRELYRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGV---INLVSCQGVVQAEVSRLEGELERQRARLARRNRRSSARSLVAKMLHKCGPSAL-----FSDDSP--SPTARGSGRGPAAGAFSRRRSSLAGGTGASWREENSGGGLGRPSDGDLTDSSDDISGTVARRATAAAARVSGEASGVGQGEDGFSIDDXXXXXXXXXXXXXXXXXXXGACDIFLEAVSTAGLQDELLCNRDVEVLGVDPPRPLPAAAYDLQTALESVQHFATQTLAGVVQAAAVRGSDLYDNDYDPLSGARSPRHLAGGGRAGKGSAAKEAREGGVAAGLVEEWEAAWPPRELTAALGLVTARQMAHAMRCDTEPLIQIWMRCFTPVDAKHRTKLWGGLAPPPSVNDRFLEAGRWHRQLVCGLLTLYAQVHMSWPFLARPKDDPDAVGLRSLRLETTWFGTQEDVGXXXXXXXXXXXXXXXXEEESPIGAGSAAGSWDEAGGG-----------AVGRG----PLQWDEEKAVGFIQDYGAYLEGDAVAAAASCREMEWALDEVLRLAEQCEDYKSKERVLHQLLRGPRTPSMTTVSGRSSPTVWHQRSAMFGTTPARSPANSISTTGTRTPGNWTPTIMSPSRAAFPSYQLPSEAMSAGGXXXXSGWKDGDGFGGTLDAALSSGPMEEDAVRKALGLLVPPADPAGNVVEDENHRRHANAEHGQGVGFSGHEAGGSGRLLSQTTKQAPGGAPLCLLLNNLRELFRWDVAAAAEMCADAFPGVRPWNVHHALHRDQDKPWTTSEPVTPVGGGTARYQAQAPPAG--AGVAGGDGDGGTRTDAAFHAYLWAVLRKHPGECRGDWKVIQRCLQLSLRLSTKLRSLPSDHPLHSFCKAATRNFKRRRRADDPATR--ETGVRHPEGAFSTDGRGQFHNSRRWRAGGGSGGGSGMRT-PTGDLRLGVEDSGETGDGSAWRRYSDVVEELVSQWCKHGDAFGLDPLWLLPKLRAHKNWPVAFRICGAIACSWEEQGERGHQMSTGVISHCHATAAADGLEEGHDYDSLVSTLPVFDTLADACFATFNDGDTETLAAALGTTWAADGALRRVSLRARPPPLRG-------DDGGGVSPGQQAVAASLSVEESQVLGQVSAYGNVAAAAAAAGPEFGHQSPIGMQGSSSARAGACAQEXXXXXXXXXXGWVEESRMVDVVRGLARRCSGQPVGADDAGGSNNDGGDADGRGDADLGCSSTGGGDASMASEDPEGGSXXXXXXXXXXXXXXXXXXXXXXXAEAVLDGVGPEATGDVLAACPHLLEGIPPKFFQDLADRQAALSQQRALEAALLHQATAAIWASRG-----------------RRRATVTGAGD-TGDSSDASPLGPRLAWLACEELTSFF-QDNANSASASPNARLLGGEPGSAGSSCAGSPPGLQHHHRATMEVFAAGIGGDNLSRVFNGSGGNDDGLFRSLRRKEPGSVSQGLVASMGVNLDLNLVLPGNAHRGAAFDPASPCGFCGLALSG----------------------GGVACDGGGEEGEG----ELVLCACGRGIHSRCLA-------AAGWEGGW 1848
BLAST of mRNA_F-serratus_M_contig81.19506.1 vs. uniprot
Match: A0A6H5JMZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ7_9PHAE) HSP 1 Score: 715 bits (1846), Expect = 1.560e-228 Identity = 526/1357 (38.76%), Postives = 675/1357 (49.74%), Query Frame = 1
Query: 1549 SLEVLGVDPPRPLPAAAYDLQTALESVQHLATQTLSAVVQAEAVRG-----RTQEFFASGLSPRGMGGGYRA-----AKEAKEAAAAAGLRDGWEMLWPPRKLTASLALVTARQMANTMRCDAEPLIQIWMRCFTPLAVKHRERLWGALAPTP-LDSLEVFHGRWHRQLVCGLVTLFAQVHISWPFLGRPSDDP---GLNSLKLKTRWLSAYV--------------------SASNQQ-----GGDGLSVHDWPTEDGGDNDIDEQFVEDAADRNGISVPHQWYEDKTVGFIQDYGCYLEADALAAAVSCREMEWPLREVFSLAEQSGDFRARERILHQLLRGVRTP--------------------LPLSPTASSVSPLLRSPVSTPGNRTPTVVSPRSPAFKDKRVSPSAVNAA----------------LMDQAQPPGVVEEEAVRRALGLPGRSVDASAARLGRDFPSERASPQRPEGEK-------------GSESDDPLGSSPLCLLLKNLGELFKWDTAAAADICADAFPGVRPWNVHCALHQEQGEAWSSVEPPTPRPEGANIRTSSGTTANTSAKYFMGD-DSATRNDAVFQAYLWAMMEKHPTECRNDRKMVQRCLQLSLRLSTKLRSKSPDHPLVGFCKSATRSVKCRRRTNYGPSEVVQTEAFPLERGQSSANPGTSRPSRR------SGSVTSRKIYPVGD--------GVNDDNAVWRLYSEMVQHVVCAWCRDNSAYDLDPLWLLTKLRAHRDWSVAFQVCAAEARSWEK-----HASSHGSLADIAGCLPLSGAMSA----SIGT---VFDTLADACFASFEEADTKILAVAIAAIWSADGAIRRTYGRSLDEAVR------------ALKVTDENDQEEAQSPGEEVDKVDIAVESGDESKNLSRPARESSRPTSSNSS------------DWLAGSQMLDIVRRLTPRCEGLGLRLQ-----HRDEGTVS---------TIAGGMDTRTATE-----------------------VSPLELAKTILDGVGPETTISVMEACPELLDNLPPKFFHALADRQAALLQQQALETELLKQAITAVRAARGRASGYSYNSGGAAGDSTRKKSTPAASGYWLDDRAKLSPLGTRLAWLALEELTSFFPQDRDKLAL---------------PYLSDSKDTSE-----TSDLSA-------------GATAKTEGV--ASYEEEP--------LTQAVNRSGINLLLPKSTHRGVSLRPYSPCLLCGIPLAGTACSISVASPVGRDVAGFRGSSGGVTRDKGGVMPPGGEELQVVVEACGHGFHVACVEEGLEGAGAKGWREAWW 4962
+L VLGVDPPRPLPAAAYDLQTALESVQH ATQTL+ VVQA AVRG + + SPR + GG RA AKEA++ AAGL +GWE WPPR+LTA+L LVTARQMA+ MRCDAEPLIQIWMRCFTP+ KHR +LWG LAP P ++ + GRWHRQLVCGL+TL+AQVH+SWPFL RP DDP GL SL+L+T W +A+ ++ G SV DW GG A R P QW E+K VGFIQDYG YLEADA+AAA SCREMEW L EV LAEQ D++++ER+LHQLLRG RTP L +P S + + + TPGN TPT++SP F ++ A++AA +D A G +EE+AVR+ALGL D + + + A+ + +G G + G +PLCLLL NLGELF+WD AAAA++CADAFPGVRPWNVH ALH++Q + W++ EP TP EG + R + A GD D TR DA F AYLWA++ KHP ECR D K++QRCLQLSLRLSTKLRS DHPL FCK ATR++K R+R + P+ P E G S+ G SRR SG + + P GD G DD + WR YS++V+ VV WC+ A+ LDPLWLL KLRAH++W VAF++C A SWE+ H + G ++ G S+G+ VFDTLADACFA+F + DT+ LA A+ A W+ADGA+RR R+ ++R A+ + + +A V A G E + S + S +S W+ S+M+D+VR L RC G + + D G + GG+D +E A+ +LD VGPE T V+ ACP LL+ +PPK AAL QQ+ALE LL QA A+ A+RGR + +G G S SPLG RLAWLA EELTSFF + + + P ++S + T+D+ A G +G+ + +EP T VN +NL+LP + HRG + P SPC CG+ L+G G V D GG E ++V+ ACG G H C+ A GW W
Sbjct: 32 TLPVLGVDPPRPLPAAAYDLQTALESVQHFATQTLAGVVQAAAVRGSDLYDNDYDSLSGARSPRHLAGGGRAGKGSGAKEARDGGVAAGLVEGWEAAWPPRELTAALGLVTARQMAHAMRCDAEPLIQIWMRCFTPVDAKHRTKLWGGLAPAPSVNDPFLEAGRWHRQLVCGLLTLYAQVHMSWPFLARPKDDPDAVGLRSLRLETTWFGTQEDVGAGGXXXXXXXGIAVPGNAAAEEESPIGAGSPAGSVGDWDEAGGG-----------AGGRG----PLQWDEEKAVGFIQDYGAYLEADAVAAAASCREMEWALDEVLRLAEQCEDYKSKERVLHQLLRGPRTPSVTTVSGRSSPRVWHQRAGMLGTTPARSPANSISTTGTRTPGNWTPTIMSPSRAGFPSYQLPIEAMSAAGGAGGSGWKDGDGFGGTLDAALSSGPMEEDAVRKALGLLVPPADPAGNVVEDENHRRHANEEHGQGVGFSGHEAGGSGRLLGQTTSQAPGGAPLCLLLNNLGELFRWDVAAAAEMCADAFPGVRPWNVHHALHRDQDKPWTTSEPVTPV-EGGSARYQTHAPP-AGAGVARGDGDGGTRTDAAFHAYLWAVLRKHPGECRGDWKVIQRCLQLSLRLSTKLRSLPSDHPLHNFCKVATRNLKRRQRAD-DPATREAGVRHP-EGGFSTDGRGQFHNSRRWRAGGGSGGGSGMRT-PTGDLRLGVEDSGETDDGSAWRRYSDVVEEVVSQWCKHGDAFGLDPLWLLPKLRAHKNWPVAFRICGAITCSWEEQEEEGHQMNTGVISHCYATAAADGLEEGHDYGSLGSTLPVFDTLADACFATFNDGDTETLAAALGATWAADGALRRVSLRARPPSLRGDDGGRLSPRQQAVASSLSGGKIQASGQTGAYSNVTAAAGGGPELGHQSLTGMQGSSSAGVGASAEXXXXXXXXXXGWVEESRMVDVVRGLARRCSGQPVGADDAGGSNNDGGDADGRGDANLGCSSTGGVDASMTSEDPEGGSXXXXXXXXXXXXXXXXXXXXXXXAEAVLDAVGPEATGDVLAACPHLLEGIPPK---------AALSQQRALEAALLHQATAAIWASRGRRRTTATGAGNKGGSSDA------------------SPLGPRLAWLACEELTSFFQDNANSASASPNARLLGGEPGSAGPSCAESPPGLQHHHRATTDVFAAGVGGDNLSRVFSGFGGNDDGLFRSLRRKEPGSVSQGLVATMGVNLD-LNLVLPGNAHRGAAFNPASPCGFCGLALSG----------------------GAVACDGGGEG-----EGKLVLCACGRGIHSRCLA-------AAGWDSGRW 1306
BLAST of mRNA_F-serratus_M_contig81.19506.1 vs. uniprot
Match: A0A6H5JMH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH3_9PHAE) HSP 1 Score: 140 bits (352), Expect = 1.550e-32 Identity = 119/310 (38.39%), Postives = 147/310 (47.42%), Query Frame = 1
Query: 1 LGELRSRRESRVSSSPAVVMDLPSSAMDDPSPFVPPSQYQVRLNRSKGLGISIDITGNDVRVKGFPLLPGGEIGPAQACGQIQANALVCVNHDQLTLLNHDSVVRVLRGLLSNNADQLVLMRFLYAEDSSAPSLL-------------PTRSVPISSAAMKHQSS--VEASEVMRGGRFRSESWHGSRNAGDTQRQQQEHLKIERRHSHSQ--GDSAEDSPTLGSGMDGXXXXXXXXXXXXXXXD--------TTDGSRGRDKIRLERLWGESDKGFGKGGGVNRHVYLGDMGLAQAQKTLSDIAQDVQV 855
LG LRSRRESR+ + A V +LP SAMDDP+PFVPPSQY+V +ALV VNH+QL LLNH++VVRVLRGLL Q++L+RF YAEDS P LL P P S QS V S++ FRSESWHGSR ++ Q + ++ R S + G + S +LG G D DG R R K R LWGE + G G G +RH+YLGDMG A+ Q+TL IA+DVQV
Sbjct: 15 LGTLRSRRESRIPAHLATVTELPVSAMDDPNPFVPPSQYEV------------------------------------------GDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDS--PRLLRATTSPXXXXXLPPKTPGPRPSTMENPQSEPRVSQSDLDTEEAFRSESWHGSRKPPRARKGQGQGREMARSVSPHRRTGPALLRSQSLGEGGPPAVAGLAHKGSGAEAGDKEGEREGWAVDGMRPRGK-RRGVLWGEPEMGLAGGDGGSRHIYLGDMGHARVQRTLQAIAEDVQV 279
BLAST of mRNA_F-serratus_M_contig81.19506.1 vs. uniprot
Match: A0A835Z5M4_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5M4_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 6.740e-13 Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = 1
Query: 49 AVVMDLPSSAMDDPSPFVPPSQYQVRLNRSKGLGISIDITGNDVRVKGFPLLPGGEIGPAQACGQIQA-NALVCVNHDQLTLLNHDSVVRVLRGLLSNNADQLVLMRFLYAED 384
A + LP+S++DDPSPFVPPSQY RL+ SKGLGI++ ITG VRV GF G + AQ G I + L+ VN LTL+ + ++ VLR L + V +RF Y ++
Sbjct: 91 ASIGSLPASSVDDPSPFVPPSQYIARLDASKGLGINLQITGVKVRVGGFAPAANGAMSAAQLSGIISVGDVLLGVNGRDLTLMRFNDILGVLRAL-PRIKEGTVTLRFAYGQE 202 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig81.19506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig81.19506.1 >prot_F-serratus_M_contig81.19506.1 ID=prot_F-serratus_M_contig81.19506.1|Name=mRNA_F-serratus_M_contig81.19506.1|organism=Fucus serratus male|type=polypeptide|length=1655bp LGELRSRRESRVSSSPAVVMDLPSSAMDDPSPFVPPSQYQVRLNRSKGLGback to top mRNA from alignment at F-serratus_M_contig81:737195..748285+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig81.19506.1 ID=mRNA_F-serratus_M_contig81.19506.1|Name=mRNA_F-serratus_M_contig81.19506.1|organism=Fucus serratus male|type=mRNA|length=11091bp|location=Sequence derived from alignment at F-serratus_M_contig81:737195..748285+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig81:737195..748285+ >mRNA_F-serratus_M_contig81.19506.1 ID=mRNA_F-serratus_M_contig81.19506.1|Name=mRNA_F-serratus_M_contig81.19506.1|organism=Fucus serratus male|type=CDS|length=9930bp|location=Sequence derived from alignment at F-serratus_M_contig81:737195..748285+ (Fucus serratus male)back to top |