mRNA_F-serratus_M_contig8091.19489.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8091.19489.1
Unique NamemRNA_F-serratus_M_contig8091.19489.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig8091.19489.1 vs. uniprot
Match: A0A3R7NWW4_PENVA (Histone domain-containing protein n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7NWW4_PENVA)

HSP 1 Score: 167 bits (423), Expect = 7.830e-51
Identity = 95/133 (71.43%), Postives = 106/133 (79.70%), Query Frame = 1
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPSNV*ISRAI--YASRDLPI----GSPGGRRGIPGWPI*RYQPVRHPRQACHYYAQGHPAGQAHPRR 381
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLP    +      + +  LP+    GS G  RG+PG P+  +QPVRHPRQAC++YAQG+P    +PRR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDPLPVLCCHGSAGSLRGLPGRPLRGHQPVRHPRQACNHYAQGYPTCSPYPRR 133          
BLAST of mRNA_F-serratus_M_contig8091.19489.1 vs. uniprot
Match: A0A485MXG5_LYNPA (H3 histone n=1 Tax=Lynx pardinus TaxID=191816 RepID=A0A485MXG5_LYNPA)

HSP 1 Score: 158 bits (400), Expect = 1.750e-47
Identity = 94/148 (63.51%), Postives = 104/148 (70.27%), Query Frame = 1
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPSNV*ISRAIYASRDLPI---------------------GSPGGRRGIPGWPI*RYQPVRHPRQACHYYAQGHPAGQAHPRR 381
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI+       + RA +    +P                      G+ GG RG+PG  +  +QPVRHPRQA H++AQGHPAG  HPRR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIQ-------VHRAAHPQAAVPAAGARDRAGLQDRPALPELGRDGAAGGVRGLPGGALRGHQPVRHPRQARHHHAQGHPAGAPHPRR 141          
BLAST of mRNA_F-serratus_M_contig8091.19489.1 vs. uniprot
Match: W5NRH6_SHEEP (Histone domain-containing protein n=1 Tax=Ovis aries TaxID=9940 RepID=W5NRH6_SHEEP)

HSP 1 Score: 158 bits (399), Expect = 1.080e-46
Identity = 94/131 (71.76%), Postives = 101/131 (77.10%), Query Frame = 1
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPSNV*ISRAIYASRDLPI----GSPGGRRGIPGWPI*RYQPVRHPRQACHYYAQGHPAGQAHPRR 381
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLP    +         LP     G+ G  RG+PG  +  +QPVRHPRQA H++AQGHPA    PRR
Sbjct:   41 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR-LGEGDGVGPALPKLGCDGAAGSVRGLPGGALRGHQPVRHPRQARHHHAQGHPACTPDPRR 170          
BLAST of mRNA_F-serratus_M_contig8091.19489.1 vs. uniprot
Match: A0A8D1S2G1_PIG (Histone domain-containing protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1S2G1_PIG)

HSP 1 Score: 155 bits (392), Expect = 3.920e-46
Identity = 92/131 (70.23%), Postives = 100/131 (76.34%), Query Frame = 1
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPSNV*ISRAIYASR-DLPIGSPG-----GRRGIPGWPI*RYQPVRHPRQACHYYAQGHPAGQAHP 375
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLP    +       + DL   S       G RG+PG  +  +QPV HPRQACHY+AQG+PA   +P
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALRGVRGLPGGALRGHQPVCHPRQACHYHAQGYPACPPYP 131          
BLAST of mRNA_F-serratus_M_contig8091.19489.1 vs. uniprot
Match: A0A1Z5LBX3_ORNMO (Histone H3 (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5LBX3_ORNMO)

HSP 1 Score: 153 bits (386), Expect = 1.920e-44
Identity = 93/141 (65.96%), Postives = 104/141 (73.76%), Query Frame = 1
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPSNV*I--------------SRAIYASR----DLPI----GSPGGRRGIPGWPI*RYQPVRHPRQACHYYAQGHP 357
            MARTKQTARKSTGGKAPRK LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLP    +              S A+ A+R     LP     GS GG+R +P  P+ R+QPVRHPRQA H++A+G+P
Sbjct:    1 MARTKQTARKSTGGKAPRKHLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMAARHRGSSLPELRRDGSAGGQRSLPRRPVRRHQPVRHPRQARHHHAKGYP 141          
BLAST of mRNA_F-serratus_M_contig8091.19489.1 vs. uniprot
Match: A0A4U5LP26_STECR (Histone domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5LP26_STECR)

HSP 1 Score: 150 bits (379), Expect = 3.590e-44
Identity = 92/136 (67.65%), Postives = 99/136 (72.79%), Query Frame = 1
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPSNV*ISRA---------IYASRDLPIGSPGGRRGIPGWPI*RYQPVRHPRQACHYYAQGHPAGQAHPRR 381
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLP    +              +S   P  SP   R +P  P+  +Q VRHPRQA H++AQ HPA   HPRR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSLCSPSRSP---RSLPRRPLRGHQLVRHPRQASHHHAQRHPARSPHPRR 133          
BLAST of mRNA_F-serratus_M_contig8091.19489.1 vs. uniprot
Match: B8A6X4_ORYSI (Histone domain-containing protein n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=B8A6X4_ORYSI)

HSP 1 Score: 144 bits (362), Expect = 1.590e-41
Identity = 89/139 (64.03%), Postives = 100/139 (71.94%), Query Frame = 1
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPSNV*I--------------SRAIYASRDLPIGSPGGRRGIPGWPI*RYQPVRHPRQACHYYAQGHPAGQAHP 375
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLP    +              S A+ A ++ P      RR + G     +QP+RHPRQA H++AQGHPA   HP
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAPRLP---RRALRG-----HQPLRHPRQARHHHAQGHPARPPHP 131          
BLAST of mRNA_F-serratus_M_contig8091.19489.1 vs. uniprot
Match: A0A3P8UEV8_AMPPE (Histone domain-containing protein n=1 Tax=Amphiprion percula TaxID=161767 RepID=A0A3P8UEV8_AMPPE)

HSP 1 Score: 141 bits (356), Expect = 6.600e-40
Identity = 85/134 (63.43%), Postives = 96/134 (71.64%), Query Frame = 1
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPAT--GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPSNV*ISRAIYASRDLPI-------GSPGGRRGIPGWPI*RYQPVRHPRQACHYYAQGHPAGQAHP 375
            MARTKQTARKSTGGKAPRKQLA +AARKSA AT  GGVKKPHRYRPGT ALRE+RRYQKSTELLIRK P    +       +D P        GS GG+RG+PG  +  ++ VRHPRQ  H++AQ HPA   HP
Sbjct:    1 MARTKQTARKSTGGKAPRKQLAAEAARKSATATATGGVKKPHRYRPGTEALREVRRYQKSTELLIRKPPFQRLVREIAQDFQDRPALPELRRHGSVGGQRGLPGRTLRGHRSVRHPRQEGHHHAQRHPASPPHP 134          
BLAST of mRNA_F-serratus_M_contig8091.19489.1 vs. uniprot
Match: A0A0E0DW54_9ORYZ (Histone domain-containing protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A0E0DW54_9ORYZ)

HSP 1 Score: 139 bits (350), Expect = 2.020e-39
Identity = 93/169 (55.03%), Postives = 103/169 (60.95%), Query Frame = 1
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPSNV*ISR-------------------------------------AIYASRD--LPIGSPGGRR---GIPGWPI*RYQPVRHPRQACHYYAQGHPAGQAHPRR 381
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLP    +                                       AI+A R   +P      RR   G+P   +  +QP+RHPRQA H++AQGHPA   HPRR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIXRGLPRRALRGHQPLRHPRQARHHHAQGHPARPPHPRR 169          
BLAST of mRNA_F-serratus_M_contig8091.19489.1 vs. uniprot
Match: A0A8F5HTB3_9PEZI (Histone (Fragment) n=1 Tax=Colletotrichum orchidophilum TaxID=1209926 RepID=A0A8F5HTB3_9PEZI)

HSP 1 Score: 132 bits (333), Expect = 9.790e-38
Identity = 75/112 (66.96%), Postives = 86/112 (76.79%), Query Frame = 1
Query:   40 GKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPSNV*ISR-AIYASRDLPI----GSPGGRRGIPGWPI*RYQPVRHPRQACHYYAQGHPA 360
            GKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLP    ++R  +     LP+     SPG R  +P  P+  +QPVRH RQACH+  QGHPA
Sbjct:    2 GKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVNRPGLQVRSPLPVVCDRRSPGVRGVLPCLPLRGHQPVRHSRQACHHPVQGHPA 113          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8091.19489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3R7NWW4_PENVA7.830e-5171.43Histone domain-containing protein n=1 Tax=Penaeus ... [more]
A0A485MXG5_LYNPA1.750e-4763.51H3 histone n=1 Tax=Lynx pardinus TaxID=191816 RepI... [more]
W5NRH6_SHEEP1.080e-4671.76Histone domain-containing protein n=1 Tax=Ovis ari... [more]
A0A8D1S2G1_PIG3.920e-4670.23Histone domain-containing protein n=1 Tax=Sus scro... [more]
A0A1Z5LBX3_ORNMO1.920e-4465.96Histone H3 (Fragment) n=1 Tax=Ornithodoros moubata... [more]
A0A4U5LP26_STECR3.590e-4467.65Histone domain-containing protein n=1 Tax=Steinern... [more]
B8A6X4_ORYSI1.590e-4164.03Histone domain-containing protein n=1 Tax=Oryza sa... [more]
A0A3P8UEV8_AMPPE6.600e-4063.43Histone domain-containing protein n=1 Tax=Amphipri... [more]
A0A0E0DW54_9ORYZ2.020e-3955.03Histone domain-containing protein n=2 Tax=Eukaryot... [more]
A0A8F5HTB3_9PEZI9.790e-3866.96Histone (Fragment) n=1 Tax=Colletotrichum orchidop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8091contigF-serratus_M_contig8091:4584..4982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score125.9
Seed ortholog evalue7.3e-27
Seed eggNOG ortholog10029.XP_003502222.1
Preferred nameHIST2H3A
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein heterodimerization activity
EggNOG OGs35PSM@314146,39ZTV@33154,3BPDH@33208,3D6BK@33213,3JGKY@40674,48E1W@7711,49B7M@7742,4Q54X@9989,COG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons2
Model size381
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8091.19489.1prot_F-serratus_M_contig8091.19489.1Fucus serratus malepolypeptideF-serratus_M_contig8091 4752..4982 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932412.8291316-UTR-F-serratus_M_contig8091:4583..47511622932412.8291316-UTR-F-serratus_M_contig8091:4583..4751Fucus serratus maleUTRF-serratus_M_contig8091 4584..4751 -
1690964296.5359447-UTR-F-serratus_M_contig8091:4583..47511690964296.5359447-UTR-F-serratus_M_contig8091:4583..4751Fucus serratus maleUTRF-serratus_M_contig8091 4584..4751 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932412.851968-CDS-F-serratus_M_contig8091:4751..47521622932412.851968-CDS-F-serratus_M_contig8091:4751..4752Fucus serratus maleCDSF-serratus_M_contig8091 4752..4752 -
1690964296.5498054-CDS-F-serratus_M_contig8091:4751..47521690964296.5498054-CDS-F-serratus_M_contig8091:4751..4752Fucus serratus maleCDSF-serratus_M_contig8091 4752..4752 -
1622932412.890444-CDS-F-serratus_M_contig8091:4770..49821622932412.890444-CDS-F-serratus_M_contig8091:4770..4982Fucus serratus maleCDSF-serratus_M_contig8091 4771..4982 -
1690964296.5676508-CDS-F-serratus_M_contig8091:4770..49821690964296.5676508-CDS-F-serratus_M_contig8091:4770..4982Fucus serratus maleCDSF-serratus_M_contig8091 4771..4982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8091.19489.1

>prot_F-serratus_M_contig8091.19489.1 ID=prot_F-serratus_M_contig8091.19489.1|Name=mRNA_F-serratus_M_contig8091.19489.1|organism=Fucus serratus male|type=polypeptide|length=71bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPSNV*
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mRNA from alignment at F-serratus_M_contig8091:4584..4982-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8091.19489.1 ID=mRNA_F-serratus_M_contig8091.19489.1|Name=mRNA_F-serratus_M_contig8091.19489.1|organism=Fucus serratus male|type=mRNA|length=399bp|location=Sequence derived from alignment at F-serratus_M_contig8091:4584..4982- (Fucus serratus male)
ATGGCTCGCACCAAGCAGACCGCGCGTAAATCTACTGGAGGAAAGGCCCC GCGCAAGCAGCTTGCCACCAAAGCTGCCCGCAAATCTGCGCCAGCCACTG GTGGAGTGAAGAAGCCTCACCGCTACAGGCCGGGCACGGTTGCTCTTCGC GAGATCCGGCGGTACCAGAAGTCCACCGAGCTTCTAATCCGTAAGCTTCC TTCCAACGTTTAGTGCGCGAGATCGCCCAGGATTTCAAGAGCGATCTACG CTTCCAGGGATCTGCCCATTGGCTCTCCAGGAGGCCGCAGAGGCATACCT GGTTGGCCTATTTGAAGATACCAACCTGTGCGCCATCCACGCCAAGCGTG TCACTATTATGCCCAAGGACATCCAGCTGGCCAGGCGCATCCGCGGAGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig8091:4584..4982-

>mRNA_F-serratus_M_contig8091.19489.1 ID=mRNA_F-serratus_M_contig8091.19489.1|Name=mRNA_F-serratus_M_contig8091.19489.1|organism=Fucus serratus male|type=CDS|length=426bp|location=Sequence derived from alignment at F-serratus_M_contig8091:4584..4982- (Fucus serratus male)
ATGGCTCGCACCAAGCAGACCGCGCGTAAATCTACTGGAGGAAAGGCCCC
GCGCAAGCAGCTTGCCACCAAAGCTGCCCGCAAATCTGCGCCAGCCACTG
GTGGAGTGAAGAAGCCTCACCGCTACAGGCCGGGCACGGTTGCTCTTCGC
GAGATCCGGCGGTACCAGAAGTCCACCGAGCTTCTAATCCGTAAGCTTCC
TTCCAACGTTTAATGGCTCGCACCAAGCAGACCGCGCGTAAATCTACTGG
AGGAAAGGCCCCGCGCAAGCAGCTTGCCACCAAAGCTGCCCGCAAATCTG
CGCCAGCCACTGGTGGAGTGAAGAAGCCTCACCGCTACAGGCCGGGCACG
GTTGCTCTTCGCGAGATCCGGCGGTACCAGAAGTCCACCGAGCTTCTAAT
CCGTAAGCTTCCTTCCAACGTTTAGG
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