mRNA_F-serratus_M_contig808.19475.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig808.19475.1
Unique NamemRNA_F-serratus_M_contig808.19475.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: D7FH19_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH19_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 5.460e-29
Identity = 62/104 (59.62%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARGPLPTE-ATQVADDCCMLP 309
            F  A+EA R++S+      LRCL+VLDNVW+VEVVNAFA+TG H LVTTR+R VI  ++  V  EVGDM +E+ LE+L K S A GPLP E A QVA DC MLP
Sbjct:  340 FSGAEEALRHLSSVCAEDGLRCLVVLDNVWNVEVVNAFASTGFHVLVTTRQRAVISAVHAGVWTEVGDMSEEDALEVLSKASQADGPLPAEEARQVALDCGMLP 443          
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: D8LL58_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL58_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 6.820e-16
Identity = 45/104 (43.27%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARGPLPT-EATQVADDCCMLP 309
            F   + A  ++    K + LRCL+VLD+VWD ++V  F   G H+LVTTR+  VIP   + V  EV  +   E LELLK  S A   +PT E  +VA DC  LP
Sbjct:  339 FVDVEHAVSHLEGVRKERNLRCLVVLDDVWDAQIVPLFLCGGFHSLVTTRDLAVIPRDLQGVCTEVEMLTNAEALELLKNASRATAAIPTNEGLKVAKDCGFLP 442          
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: A0A6H5L982_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L982_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.660e-14
Identity = 42/104 (40.38%), Postives = 56/104 (53.85%), Query Frame = 1
Query:    1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARGPLPT-EATQVADDCCMLP 309
            F   +    ++   ++   LRCL+VLDNVWD E+V  F  TG   LVTTR+  ++P         V  + + E LELLKK S A   +P  E  +VADDC  LP
Sbjct:  298 FRDVEHVVSHLVGVLEQGNLRCLVVLDNVWDREMVPLFLRTGFRCLVTTRDVAMVPRHLWGTCTPVDMLTEAEALELLKKASRATSSIPRDEGLEVADDCGFLP 401          
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.630e-12
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 1
Query:    1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARGP----LPTEATQVADDCCMLP 309
            FDS ++  ++++A +       L+VLD+VW+ EVV AF   G+  LVTTR+R+++       ++E+GDM ++E LELL KTS   G     + T+ T+V D C  LP
Sbjct:  344 FDSLEQVMQHLAAVVSRGSSPRLVVLDDVWEREVVAAFLGVGLKVLVTTRDRSIVG--VPGGLLELGDMAEDEALELLWKTSGTVGQPGDGVRTQMTKVVDRCGRLP 448          
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.070e-11
Identity = 43/107 (40.19%), Postives = 66/107 (61.68%), Query Frame = 1
Query:    1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARGP----LPTEATQVADDCCMLP 309
             DS ++  ++++A   T   + L+VLD+VW+ EVV+AF   G   L+TTR+R+V+     R+  E+GD+ +EE LELL+KTS A G     + T+ T+V   C  LP
Sbjct:  350 LDSLEQVRQHLAAVTSTGTSQRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRL--ELGDVTEEEALELLRKTSGAVGQPGDDVRTKMTKVVALCGHLP 454          
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.920e-11
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 1
Query:    1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARGP----LPTEATQVADDCCMLP 309
             D  ++  ++++A   T     L+VLD+VW+ EVV+AF   G   L+TTR+R+V+     R+  EVGDM +EE LELL+K+S A G     + T+ T+V   C  LP
Sbjct:  313 LDGLEQVKQHLAAVASTGTFPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVVVPAGRL--EVGDMTEEEALELLRKSSGAVGQPGDDVRTKMTKVVALCGHLP 417          
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 3.710e-11
Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = 1
Query:    1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARGP---LPTEATQVADDCCMLP 309
             DS ++  ++++A   T+    L+VLD+VW+ EVV+AF   G   L+TTR+R+++     R+  E+GDM +EE LELL+KTS    P   +  + T+V   C  LP
Sbjct:  152 LDSLEQVQQHLAAVASTRNSPRLVVLDDVWEREVVDAFVPLGFKLLLTTRDRSIVCDPAGRL--ELGDMTEEEALELLRKTSGTVDPGDDVRMKMTKVVALCGHLP 255          
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.280e-10
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 1
Query:    1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARG----PLPTEATQVADDCCMLP 309
             DS ++  R++ A   T     L+VLD+VW+ EVV+A    G   LVTTR+R+V+    R   +E+GDM +EE LELL KTS   G     + T  T+V   C  LP
Sbjct:  244 LDSLEQVQRHLGAVASTGTSPRLVVLDDVWEREVVDALLPLGFKVLVTTRDRSVVGVPTR--CLELGDMTEEEALELLLKTSGTVGRPGDSVRTVMTKVVTLCGRLP 348          
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.750e-10
Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = 1
Query:    1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARGP----LPTEATQVADDCCMLP 309
             D  ++  ++++A   T     L+VLD+VW+ EVV+AF   G   L+TTR+R+V+     R+  E+GDM +EE LELL+KTS   G     + T+ T+V   C  LP
Sbjct:  367 LDRLEQVQQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGLPAGRL--ELGDMTEEEALELLRKTSGTVGQPGDDVRTKMTKVVALCGHLP 471          
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.100e-9
Identity = 39/107 (36.45%), Postives = 62/107 (57.94%), Query Frame = 1
Query:    1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARGP----LPTEATQVADDCCMLP 309
             +S ++  ++++          L+VLD+VW+ EVV+A  + G+  LVTTR+R+V+       ++E+GDM +EE LELL KTS   G     + T+ T+V   C  LP
Sbjct:  108 LESLEQVKQHLATVASAGTSPRLVVLDDVWEREVVDALLSLGLKVLVTTRDRSVVG--VSGGLLELGDMTEEEALELLLKTSRTVGQPGHEVRTQMTKVVVLCGHLP 212          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FH19_ECTSI5.460e-2959.62NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LL58_ECTSI6.820e-1643.27NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5L982_9PHAE3.660e-1440.38NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LPV9_ECTSI1.630e-1239.25NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
D7G720_ECTSI1.070e-1140.19NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KXS7_9PHAE1.920e-1140.19NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FUD7_ECTSI3.710e-1138.68NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KU94_9PHAE1.280e-1041.12NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G722_ECTSI1.750e-1039.25NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5LJA6_9PHAE5.100e-936.45NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig808contigF-serratus_M_contig808:152719..153233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue2.9e-24
Seed eggNOG ortholog2880.D7FH19
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons2
Model size310
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932409.8097112-CDS-F-serratus_M_contig808:152718..1530001622932409.8097112-CDS-F-serratus_M_contig808:152718..153000Fucus serratus maleCDSF-serratus_M_contig808 152719..153000 +
1690964294.9583879-CDS-F-serratus_M_contig808:152718..1530001690964294.9583879-CDS-F-serratus_M_contig808:152718..153000Fucus serratus maleCDSF-serratus_M_contig808 152719..153000 +
1622932409.8265548-CDS-F-serratus_M_contig808:153206..1532331622932409.8265548-CDS-F-serratus_M_contig808:153206..153233Fucus serratus maleCDSF-serratus_M_contig808 153207..153233 +
1690964294.9731326-CDS-F-serratus_M_contig808:153206..1532331690964294.9731326-CDS-F-serratus_M_contig808:153206..153233Fucus serratus maleCDSF-serratus_M_contig808 153207..153233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig808.19475.1prot_F-serratus_M_contig808.19475.1Fucus serratus malepolypeptideF-serratus_M_contig808 152719..153233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig808.19475.1

>prot_F-serratus_M_contig808.19475.1 ID=prot_F-serratus_M_contig808.19475.1|Name=mRNA_F-serratus_M_contig808.19475.1|organism=Fucus serratus male|type=polypeptide|length=103bp
FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTR
ERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARGPLPTEATQVADDCC
MLP
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mRNA from alignment at F-serratus_M_contig808:152719..153233+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig808.19475.1 ID=mRNA_F-serratus_M_contig808.19475.1|Name=mRNA_F-serratus_M_contig808.19475.1|organism=Fucus serratus male|type=mRNA|length=515bp|location=Sequence derived from alignment at F-serratus_M_contig808:152719..153233+ (Fucus serratus male)
TTTGACAGCGCTGACGAGGCTGCACGGTACGTATCCGCGACCATCAAAAC GAAAAAATTGCGGTGCCTGATGGTGTTGGATAACGTCTGGGATGTGGAGG TTGTCAACGCATTCGCAAACACGGGCATCCACGCCCTTGTCACCACTCGT GAAAGGACCGTGATCCCACCGATGTACCGAAGAGTGATGGTGGAGGTTGG AGATATGGAAAAGGAGGAAGGTTTGGAGCTTCTTAAGAAGACCAGCTACG CTCGTGGGCCTCTACCAACCGAGGCTACGCAGGTATTTGCATATTTGATC GGGCCAGCTGTAGCGCTTTATGAATTAAGCAAGGCTTGGAATCAGAGATG TAGGGTGAAAGCCACCAATAATGCCGTAAGTTACGGTGATATTTCTTGAG CAGACTTTCGCGGTCGAAAGGGACCTCCATTTCTGTGCCCTAAAAAAGCT GATACCCCAAAAAACGTATCTCAATTCTTTTTACGCAGGTGGCCGACGAC TGCTGCATGCTGCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig808:152719..153233+

>mRNA_F-serratus_M_contig808.19475.1 ID=mRNA_F-serratus_M_contig808.19475.1|Name=mRNA_F-serratus_M_contig808.19475.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig808:152719..153233+ (Fucus serratus male)
TTTGACAGCGCTGACGAGGCTGCACGGTACGTATCCGCGACCATCAAAAC
GAAAAAATTGCGGTGCCTGATGGTGTTGGATAACGTCTGGGATGTGGAGG
TTGTCAACGCATTCGCAAACACGGGCATCCACGCCCTTGTCACCACTCGT
GAAAGGACCGTGATCCCACCGATGTACCGAAGAGTGATGGTGGAGGTTGG
AGATATGGAAAAGGAGGAAGGTTTGGAGCTTCTTAAGAAGACCAGCTACG
CTCGTGGGCCTCTACCAACCGAGGCTACGCAGTTTGACAGCGCTGACGAG
GCTGCACGGTACGTATCCGCGACCATCAAAACGAAAAAATTGCGGTGCCT
GATGGTGTTGGATAACGTCTGGGATGTGGAGGTTGTCAACGCATTCGCAA
ACACGGGCATCCACGCCCTTGTCACCACTCGTGAAAGGACCGTGATCCCA
CCGATGTACCGAAGAGTGATGGTGGAGGTTGGAGATATGGAAAAGGAGGA
AGGTTTGGAGCTTCTTAAGAAGACCAGCTACGCTCGTGGGCCTCTACCAA
CCGAGGCTACGCAGGTGGCCGACGACTGCTGCATGCTGCCCGTGGCCGAC
GACTGCTGCATGCTGCCC
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