mRNA_F-serratus_M_contig8076.19474.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8076.19474.1
Unique NamemRNA_F-serratus_M_contig8076.19474.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8076.19474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8076contigF-serratus_M_contig8076:5916..6584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932409.7356515-CDS-F-serratus_M_contig8076:5915..61001622932409.7356515-CDS-F-serratus_M_contig8076:5915..6100Fucus serratus maleCDSF-serratus_M_contig8076 5916..6100 -
1690964294.9337153-CDS-F-serratus_M_contig8076:5915..61001690964294.9337153-CDS-F-serratus_M_contig8076:5915..6100Fucus serratus maleCDSF-serratus_M_contig8076 5916..6100 -
1622932409.7579389-CDS-F-serratus_M_contig8076:6502..65841622932409.7579389-CDS-F-serratus_M_contig8076:6502..6584Fucus serratus maleCDSF-serratus_M_contig8076 6503..6584 -
1690964294.9480515-CDS-F-serratus_M_contig8076:6502..65841690964294.9480515-CDS-F-serratus_M_contig8076:6502..6584Fucus serratus maleCDSF-serratus_M_contig8076 6503..6584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8076.19474.1prot_F-serratus_M_contig8076.19474.1Fucus serratus malepolypeptideF-serratus_M_contig8076 5916..6584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8076.19474.1

>prot_F-serratus_M_contig8076.19474.1 ID=prot_F-serratus_M_contig8076.19474.1|Name=mRNA_F-serratus_M_contig8076.19474.1|organism=Fucus serratus male|type=polypeptide|length=89bp
ICLQDSGVITPTHVSTRLAQNRWTVTADQAFRLSPESETAPSGRTHRSAS
LRPNVGRRHAHTQEAQPVGESATGAGAVRSSGCGGTKAR
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mRNA from alignment at F-serratus_M_contig8076:5916..6584-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8076.19474.1 ID=mRNA_F-serratus_M_contig8076.19474.1|Name=mRNA_F-serratus_M_contig8076.19474.1|organism=Fucus serratus male|type=mRNA|length=669bp|location=Sequence derived from alignment at F-serratus_M_contig8076:5916..6584- (Fucus serratus male)
ATCTGCCTCCAAGACTCCGGCGTAATTACGCCAACACATGTCTCTACGCG
ATTGGCCCAAAACCGTTGGACCGTAACTGCTGGTAGGTCCCCCCGTATCG
TATGTACTTGTCTATACGGACACGTTCTTTGTCCGCTATAATTCCAGAGT
CCTCTGTAGAGATTTCATAATTGACCGGTAAACCGCAATTAACCCGTTCT
TATATCATCGGTAGATATATGACAGTAGCATCGCTTATGCTATGCTACGA
GAAGCACCCAGATTGGTTATAGGCGCAGAACAATCTATCTCTGTTAGGGG
TTTAGAGCGAAACGCCATGACATATTTGGGGGACCCCTTCTTCAAGTCTC
ATCTTCCACAATCATAACTGCCCACATTACCAGTCTAATCCTAGCATCCT
CGGGTAAACTACCACCTGACCAAAACATCGATATAATGGGAAACAAATTG
TTCTCTTGTTGTTTTCCTGGTCGAACGCGTGAAGACCAGGCCTTCCGCCT
ATCGCCCGAGAGCGAGACTGCTCCATCGGGTCGCACCCATCGATCGGCAA
GCCTCCGGCCCAACGTCGGTCGTCGCCACGCCCATACCCAAGAAGCACAG
CCTGTTGGCGAATCCGCCACAGGAGCTGGCGCCGTGCGGTCAAGCGGCTG
CGGTGGGACCAAGGCTCGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig8076:5916..6584-

>mRNA_F-serratus_M_contig8076.19474.1 ID=mRNA_F-serratus_M_contig8076.19474.1|Name=mRNA_F-serratus_M_contig8076.19474.1|organism=Fucus serratus male|type=CDS|length=534bp|location=Sequence derived from alignment at F-serratus_M_contig8076:5916..6584- (Fucus serratus male)
ATCTGCCTCCAAGACTCCGGCGTAATTACGCCAACACATGTCTCTACGCG
ATTGGCCCAAAACCGTTGGACCGTAACTGCTGATCTGCCTCCAAGACTCC
GGCGTAATTACGCCAACACATGTCTCTACGCGATTGGCCCAAAACCGTTG
GACCGTAACTGCTGACCAGGCCTTCCGCCTATCGCCCGAGAGCGAGACTG
CTCCATCGGGTCGCACCCATCGATCGGCAAGCCTCCGGCCCAACGTCGGT
CGTCGCCACGCCCATACCCAAGAAGCACAGCCTGTTGGCGAATCCGCCAC
AGGAGCTGGCGCCGTGCGGTCAAGCGGCTGCGGTGGGACCAAGGCTCGAA
CCAGGCCTTCCGCCTATCGCCCGAGAGCGAGACTGCTCCATCGGGTCGCA
CCCATCGATCGGCAAGCCTCCGGCCCAACGTCGGTCGTCGCCACGCCCAT
ACCCAAGAAGCACAGCCTGTTGGCGAATCCGCCACAGGAGCTGGCGCCGT
GCGGTCAAGCGGCTGCGGTGGGACCAAGGCTCGA
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