mRNA_F-serratus_M_contig8052.19460.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8052.19460.1
Unique NamemRNA_F-serratus_M_contig8052.19460.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig8052.19460.1 vs. uniprot
Match: A4ZW39_SACJA (CbbX n=1 Tax=Saccharina japonica TaxID=88149 RepID=A4ZW39_SACJA)

HSP 1 Score: 187 bits (475), Expect = 7.560e-55
Identity = 98/114 (85.96%), Postives = 104/114 (91.23%), Query Frame = 3 
Query:  162 DDLVGQYVGHTAPKPSD--QKAFGGILLVDEAYYLYNAANEKDYGQESIEILLNVMEEQKDDLIVTLAGYKDRMDRFFSYIPGMSA-VLETIDFPNYGTNELVEIAQVMARDLE 494
            DDLVGQYVGHTAPK  +  +KAFGGILLVDEAYYLYNAAN+KDYGQESIEILLNVMEEQK+DLIVTLAGYKDRMDRFFSYIPGMS+ V   IDFPNY T+ELVEIA VMARDLE
Sbjct:  218 DDLVGQYVGHTAPKTKEMIKKAFGGILLVDEAYYLYNAANDKDYGQESIEILLNVMEEQKEDLIVTLAGYKDRMDRFFSYIPGMSSRVGNHIDFPNYLTDELVEIAIVMARDLE 331
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BLAST of mRNA_F-serratus_M_contig8052.19460.1 vs. uniprot
Match: D8LPQ0_ECTSI (CbbX protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPQ0_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.500e-54
Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = 3 
Query:  162 DDLVGQYVGHTAPKPSD--QKAFGGILLVDEAYYLYNAANEKDYGQESIEILLNVMEEQKDDLIVTLAGYKDRMDRFFSYIPGMSAVLET-IDFPNYGTNELVEIAQVMARDLE 494
            DDLVGQYVGHTAPK  +  +KAFGGILLVDEAYYLYNAAN+KDYGQESIEILLNVMEEQKDDLIVTLAGYKDRMDRFFSYIPGMS+ +   IDFPNY  +ELVEIA VMARDL+
Sbjct:  218 DDLVGQYVGHTAPKTKEMIKKAFGGILLVDEAYYLYNAANDKDYGQESIEILLNVMEEQKDDLIVTLAGYKDRMDRFFSYIPGMSSRIGNHIDFPNYLVDELVEIAMVMARDLQ 331
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BLAST of mRNA_F-serratus_M_contig8052.19460.1 vs. uniprot
Match: A0A6U1QIB9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QIB9_9STRA)

HSP 1 Score: 184 bits (468), Expect = 6.030e-54
Identity = 93/114 (81.58%), Postives = 102/114 (89.47%), Query Frame = 3 
Query:  162 DDLVGQYVGHTAPKPSD--QKAFGGILLVDEAYYLYNAANEKDYGQESIEILLNVMEEQKDDLIVTLAGYKDRMDRFFSYIPGMSAVLET-IDFPNYGTNELVEIAQVMARDLE 494
            DDLVGQYVGHTAPK  +  ++AFGG+LLVDEAYYLYNAANEKDYGQESIEILLNVME  KDDL+V LAGYKDRMDRFFSYIPGMS+ +   IDFPNY TNELVEIA+VMAR+LE
Sbjct:  210 DDLVGQYVGHTAPKTKEMIKQAFGGVLLVDEAYYLYNAANEKDYGQESIEILLNVMENNKDDLVVVLAGYKDRMDRFFSYIPGMSSRIGNHIDFPNYETNELVEIAEVMARELE 323
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BLAST of mRNA_F-serratus_M_contig8052.19460.1 vs. uniprot
Match: A0A835Z7C7_9STRA (Cbbx protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7C7_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.020e-53
Identity = 94/114 (82.46%), Postives = 102/114 (89.47%), Query Frame = 3 
Query:  162 DDLVGQYVGHTAPKPSD--QKAFGGILLVDEAYYLYNAANEKDYGQESIEILLNVMEEQKDDLIVTLAGYKDRMDRFFSYIPGMSAVLET-IDFPNYGTNELVEIAQVMARDLE 494
            DDLVGQYVGHTAPK  D  +KAFGGILLVDEAYYLYNA+N+KDYGQESIEILLNVME QK+DLIVTLAGYKDRMD+FFSYIPGMS+ +   IDFPNY   ELVEIAQVMARDL+
Sbjct:  212 DDLVGQYVGHTAPKTKDMIKKAFGGILLVDEAYYLYNASNDKDYGQESIEILLNVMENQKEDLIVTLAGYKDRMDKFFSYIPGMSSRIGNHIDFPNYEKEELVEIAQVMARDLQ 325
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BLAST of mRNA_F-serratus_M_contig8052.19460.1 vs. uniprot
Match: A0A835YTH7_9STRA (Cbbx protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTH7_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.100e-53
Identity = 94/114 (82.46%), Postives = 103/114 (90.35%), Query Frame = 3 
Query:  162 DDLVGQYVGHTAPKPSD--QKAFGGILLVDEAYYLYNAANEKDYGQESIEILLNVMEEQKDDLIVTLAGYKDRMDRFFSYIPGMSAVLET-IDFPNYGTNELVEIAQVMARDLE 494
            DDLVGQYVGHTAPK  D  +KAFGGILLVDEAYYLYNA+N+KDYGQESIEILLNVME QK+DLIVTLAGYKDRMDRFFS+IPGMS+ +   IDFPNY  +ELVEIAQVMARDL+
Sbjct:  215 DDLVGQYVGHTAPKTKDMIKKAFGGILLVDEAYYLYNASNDKDYGQESIEILLNVMENQKEDLIVTLAGYKDRMDRFFSFIPGMSSRIGNHIDFPNYEKDELVEIAQVMARDLQ 328
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BLAST of mRNA_F-serratus_M_contig8052.19460.1 vs. uniprot
Match: A0A7R9YN37_DIALT (Hypothetical protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YN37_DIALT)

HSP 1 Score: 183 bits (465), Expect = 1.580e-53
Identity = 93/114 (81.58%), Postives = 103/114 (90.35%), Query Frame = 3 
Query:  162 DDLVGQYVGHTAPKPSD--QKAFGGILLVDEAYYLYNAANEKDYGQESIEILLNVMEEQKDDLIVTLAGYKDRMDRFFSYIPGMSAVLET-IDFPNYGTNELVEIAQVMARDLE 494
            DDLVGQYVGHTAPK  +  +KAFGGILL+DEAYYLYNAAN+KDYGQESIEILLNVME QKDDLIVTLAGYKDRMD+FFSYIPGMS+ +   IDFPNY  +ELVEIA+VMAR+LE
Sbjct:  207 DDLVGQYVGHTAPKTKEMIKKAFGGILLIDEAYYLYNAANDKDYGQESIEILLNVMENQKDDLIVTLAGYKDRMDKFFSYIPGMSSRIGNHIDFPNYEPDELVEIAKVMARELE 320
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BLAST of mRNA_F-serratus_M_contig8052.19460.1 vs. uniprot
Match: A0A7S2SBU4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBU4_9STRA)

HSP 1 Score: 178 bits (452), Expect = 1.460e-51
Identity = 88/114 (77.19%), Postives = 100/114 (87.72%), Query Frame = 3 
Query:  162 DDLVGQYVGHTAPKPSD--QKAFGGILLVDEAYYLYNAANEKDYGQESIEILLNVMEEQKDDLIVTLAGYKDRMDRFFSYIPGM-SAVLETIDFPNYGTNELVEIAQVMARDLE 494
            DDLVGQY+GHTAPK  +  +KAFGG+LL+DEAYYLYNAAN++DYGQESIEILLNVME+QKDDLIV LAGYKDRMD+FFSYIPGM S +   IDFPNY  +ELV+IA VM RDLE
Sbjct:  212 DDLVGQYIGHTAPKTKEVIKKAFGGVLLIDEAYYLYNAANDRDYGQESIEILLNVMEQQKDDLIVVLAGYKDRMDKFFSYIPGMASRIGNHIDFPNYEVDELVDIASVMVRDLE 325
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BLAST of mRNA_F-serratus_M_contig8052.19460.1 vs. uniprot
Match: A0A7S0GEK6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GEK6_9STRA)

HSP 1 Score: 171 bits (434), Expect = 4.290e-51
Identity = 83/114 (72.81%), Postives = 99/114 (86.84%), Query Frame = 3 
Query:  162 DDLVGQYVGHTAPKPSD--QKAFGGILLVDEAYYLYNAANEKDYGQESIEILLNVMEEQKDDLIVTLAGYKDRMDRFFSYIPGM-SAVLETIDFPNYGTNELVEIAQVMARDLE 494
            DDLVGQYVGHTAPK  +  +KA GG+LL+DEAYYLYNAAN++DYGQESIEILLN+ME  +DD++V +AGYKDRMD+FFSYIPGM S +   IDFPNYG +ELVEIA+VMA+ LE
Sbjct:   54 DDLVGQYVGHTAPKTKEMIKKAMGGVLLIDEAYYLYNAANDRDYGQESIEILLNIMENNQDDVVVAVAGYKDRMDKFFSYIPGMMSRIGNHIDFPNYGADELVEIAEVMAKALE 167
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BLAST of mRNA_F-serratus_M_contig8052.19460.1 vs. uniprot
Match: A0A7S1H0A8_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H0A8_9STRA)

HSP 1 Score: 171 bits (433), Expect = 5.080e-51
Identity = 84/114 (73.68%), Postives = 100/114 (87.72%), Query Frame = 3 
Query:  162 DDLVGQYVGHTAPKPSD--QKAFGGILLVDEAYYLYNAANEKDYGQESIEILLNVMEEQKDDLIVTLAGYKDRMDRFFSYIPGM-SAVLETIDFPNYGTNELVEIAQVMARDLE 494
            DDLVGQYVGHTAPK  +  +KA GG+LLVDEAYYLYNAAN++DYGQESIEILLNVME  +DDL+V +AGYKDRMD+FFSYIPGM S +   IDFPNY ++ELV+I++VMAR+LE
Sbjct:   66 DDLVGQYVGHTAPKTKEMIKKAMGGVLLVDEAYYLYNAANDRDYGQESIEILLNVMENNQDDLVVAVAGYKDRMDKFFSYIPGMMSRIGNHIDFPNYKSDELVQISEVMARELE 179
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BLAST of mRNA_F-serratus_M_contig8052.19460.1 vs. uniprot
Match: A0A7S1H0W0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H0W0_9STRA)

HSP 1 Score: 171 bits (433), Expect = 2.850e-50
Identity = 84/114 (73.68%), Postives = 100/114 (87.72%), Query Frame = 3 
Query:  162 DDLVGQYVGHTAPKPSD--QKAFGGILLVDEAYYLYNAANEKDYGQESIEILLNVMEEQKDDLIVTLAGYKDRMDRFFSYIPGM-SAVLETIDFPNYGTNELVEIAQVMARDLE 494
            DDLVGQYVGHTAPK  +  +KA GG+LLVDEAYYLYNAAN++DYGQESIEILLNVME  +DDL+V +AGYKDRMD+FFSYIPGM S +   IDFPNY ++ELV+I++VMAR+LE
Sbjct:   66 DDLVGQYVGHTAPKTKEMIKKAMGGVLLVDEAYYLYNAANDRDYGQESIEILLNVMENNQDDLVVAVAGYKDRMDKFFSYIPGMMSRIGNHIDFPNYKSDELVQISEVMARELE 179
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8052.19460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A4ZW39_SACJA7.560e-5585.96CbbX n=1 Tax=Saccharina japonica TaxID=88149 RepID... [more]
D8LPQ0_ECTSI1.500e-5484.21CbbX protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A6U1QIB9_9STRA6.030e-5481.58Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z7C7_9STRA1.020e-5382.46Cbbx protein n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A835YTH7_9STRA1.100e-5382.46Cbbx protein n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7R9YN37_DIALT1.580e-5381.58Hypothetical protein n=1 Tax=Diacronema lutheri Ta... [more]
A0A7S2SBU4_9STRA1.460e-5177.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0GEK6_9STRA4.290e-5172.81Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1H0A8_9STRA5.080e-5173.68Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S1H0W0_9STRA2.850e-5073.68Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8052contigF-serratus_M_contig8052:3820..4990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size499
Cds size495
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8052.19460.1prot_F-serratus_M_contig8052.19460.1Fucus serratus malepolypeptideF-serratus_M_contig8052 3822..4990 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932405.2113998-CDS-F-serratus_M_contig8052:3821..39551622932405.2113998-CDS-F-serratus_M_contig8052:3821..3955Fucus serratus maleCDSF-serratus_M_contig8052 3822..3955 -
1690964292.6297593-CDS-F-serratus_M_contig8052:3821..39551690964292.6297593-CDS-F-serratus_M_contig8052:3821..3955Fucus serratus maleCDSF-serratus_M_contig8052 3822..3955 -
1622932405.2318044-CDS-F-serratus_M_contig8052:4320..44731622932405.2318044-CDS-F-serratus_M_contig8052:4320..4473Fucus serratus maleCDSF-serratus_M_contig8052 4321..4473 -
1690964292.6414254-CDS-F-serratus_M_contig8052:4320..44731690964292.6414254-CDS-F-serratus_M_contig8052:4320..4473Fucus serratus maleCDSF-serratus_M_contig8052 4321..4473 -
1622932405.2503245-CDS-F-serratus_M_contig8052:4782..49901622932405.2503245-CDS-F-serratus_M_contig8052:4782..4990Fucus serratus maleCDSF-serratus_M_contig8052 4783..4990 -
1690964292.66037-CDS-F-serratus_M_contig8052:4782..49901690964292.66037-CDS-F-serratus_M_contig8052:4782..4990Fucus serratus maleCDSF-serratus_M_contig8052 4783..4990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8052.19460.1

>prot_F-serratus_M_contig8052.19460.1 ID=prot_F-serratus_M_contig8052.19460.1|Name=mRNA_F-serratus_M_contig8052.19460.1|organism=Fucus serratus male|type=polypeptide|length=165bp
DAWEARVRHGRTVAAHVFHWCSGNGQDHTVALRMGQILQRMGYCRQGHVA
VATRMISSDNTSATPPQNQVIRRRSAESFWLTKHTTCTTPPTKKTTDRNP
SRSSSMSWRSRRTTSSSPLPGTRTGWTVSSRTSPVCQPCWKPLISPTTAR
TSLSRSHRSWLGTWS
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mRNA from alignment at F-serratus_M_contig8052:3820..4990-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8052.19460.1 ID=mRNA_F-serratus_M_contig8052.19460.1|Name=mRNA_F-serratus_M_contig8052.19460.1|organism=Fucus serratus male|type=mRNA|length=1171bp|location=Sequence derived from alignment at F-serratus_M_contig8052:3820..4990- (Fucus serratus male)
GATGCGTGGGAAGCTCGGGTTCGACACGGCCGTACCGTCGCTGCACATGT
GTTTCACTGGTGCTCCGGGAACGGGCAAGACCACACGGTCGCATTGCGCA
TGGGACAGATCTTGCAGCGTATGGGCTACTGCCGACAAGGGCACGTGGCC
GTCGCAACTAGGATGATCTCGTCGGACAATACGTCGGCCACACCGCCCCA
AAACCAAGGTCTGGAAGCATTATCAATTCCGATATTGAGGTCTGAAGGAG
GAGGCGCGCGTAGTCTCAGGGAGAAAAACTTTGTCGAATGATCCAAAAAT
CGACTGCGATCTCGACCTTGTAACATGCATCGGAGACAAACAAGTGCCAA
CAGCACTTTGTTCCGTGGAGCGGCACCGCTAAATAGACCTCCCAAAACAC
CTGGAAAACTACGTGGAGAATGCCTGACAGGTTATTGTTAAACGATGCTT
ATGCCAAAATGTTCTATACTGATTTTCTGCTCGTTTCAGTGGTACCTTGT
TTTGTTGTGTCAGGAAGTGATCAGAAGGCGTTCGGCGGAATCCTTTTGGT
TGACGAAGCATACTACTTGTACAACGCCGCCAACGAAAAAGACTACGGAC
AGGAATCCATCGAGATCCTCCTCAATGTCATGGAGGAGCAGAAGGACGAC
CTCATCGTCACCCTTGCCGGGTACGTGCCGGCATTCAAGCCCTATTTTTG
CCAAATTGGATAAAATATAGTGTCATTTACTGATCCGTTCACTGATCGGG
GCCGTGTTCTTTTACTCGAGTAGTCGAACGATATATATATATATATATAT
TATAATATATATTATATATGGGTCAAGCTGGAGCGTACCTTGTACCTTGG
ATTCTTACGAGGTACACGAAGTGTTGTTCATTTGGTCACGTGGACGTACA
TAGCATAGCATAGACACCTTGTACACTATTATAATACGATTGTAGTACAG
TATTGTCACATATATTGTGGCGTCTCGCGACTCTATCTTTCCCTCGACAT
CATGCGAATCACTCTTATCTTTAATCTCTACGTAGGTACAAGGACCGGAT
GGACCGTTTCTTCTCGTACATCCCCGGTATGTCAGCCGTGTTGGAAACCA
TTGATTTCCCCAACTACGGCACGAACGAGCTTGTCGAGATCGCACAGGTC
ATGGCTAGGGACCTGGAGTAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig8052:3820..4990-

>mRNA_F-serratus_M_contig8052.19460.1 ID=mRNA_F-serratus_M_contig8052.19460.1|Name=mRNA_F-serratus_M_contig8052.19460.1|organism=Fucus serratus male|type=CDS|length=990bp|location=Sequence derived from alignment at F-serratus_M_contig8052:3820..4990- (Fucus serratus male)
GATGCGTGGGAAGCTCGGGTTCGACACGGCCGTACCGTCGCTGCACATGT
GTTTCACTGGTGCTCCGGGAACGGGCAAGACCACACGGTCGCATTGCGCA
TGGGACAGATCTTGCAGCGTATGGGCTACTGCCGACAAGGGCACGTGGCC
GTCGCAACTAGGATGATCTCGTCGGACAATACGTCGGCCACACCGCCCCA
AAACCAAGGATGCGTGGGAAGCTCGGGTTCGACACGGCCGTACCGTCGCT
GCACATGTGTTTCACTGGTGCTCCGGGAACGGGCAAGACCACACGGTCGC
ATTGCGCATGGGACAGATCTTGCAGCGTATGGGCTACTGCCGACAAGGGC
ACGTGGCCGTCGCAACTAGGATGATCTCGTCGGACAATACGTCGGCCACA
CCGCCCCAAAACCAAGTGATCAGAAGGCGTTCGGCGGAATCCTTTTGGTT
GACGAAGCATACTACTTGTACAACGCCGCCAACGAAAAAGACTACGGACA
GGAATCCATCGAGATCCTCCTCAATGTCATGGAGGAGCAGAAGGACGACC
TCATCGTCACCCTTGCCGGTGATCAGAAGGCGTTCGGCGGAATCCTTTTG
GTTGACGAAGCATACTACTTGTACAACGCCGCCAACGAAAAAGACTACGG
ACAGGAATCCATCGAGATCCTCCTCAATGTCATGGAGGAGCAGAAGGACG
ACCTCATCGTCACCCTTGCCGGGTACAAGGACCGGATGGACCGTTTCTTC
TCGTACATCCCCGGTATGTCAGCCGTGTTGGAAACCATTGATTTCCCCAA
CTACGGCACGAACGAGCTTGTCGAGATCGCACAGGTCATGGCTAGGGACC
TGGAGTGTACAAGGACCGGATGGACCGTTTCTTCTCGTACATCCCCGGTA
TGTCAGCCGTGTTGGAAACCATTGATTTCCCCAACTACGGCACGAACGAG
CTTGTCGAGATCGCACAGGTCATGGCTAGGGACCTGGAGT
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