mRNA_F-serratus_M_contig805.19457.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig805.19457.1
Unique NamemRNA_F-serratus_M_contig805.19457.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.550e-26
Identity = 57/88 (64.77%), Postives = 71/88 (80.68%), Query Frame = 1 
Query:   67 PRRIRVIFSAETGCIPLTSPDLVKRWVVVPPELAVIGDLAHHLARLLERN--RKTASSALMLTLEGFILPPTESLAVLRETDIVTVEL 324
            PRRIRV+F A+ GC+P ++P L KRW+ +PP L VIGDLAHHL R L+R   RK  SS+L+LTL+GF+LPPTESL VLRETD+VT+ L
Sbjct:   67 PRRIRVVFKADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHLTRQLKRRKGRKARSSSLVLTLDGFVLPPTESLDVLRETDVVTLTL 154
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BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: B8BP67_ORYSI (Coilin n=3 Tax=Oryza sativa TaxID=4530 RepID=B8BP67_ORYSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.820e-7
Identity = 38/106 (35.85%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:   46 QPQQLPTPR----RIRVIFSAETGCI-PLTSPDLVKRWVVVPPELAVIGDLAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIVTVELLAQTRDTQ 348
            QP  + TP     R+R++F  +      L    L + W+++PPEL+ + DLA H+A    R R++  S ++L+++GF+LPP ES  + R+ DI+ V+  A  R TQ
Sbjct:  129 QPPPMATPPAQAVRLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARF-RLRRSCPSCVILSIDGFVLPPFESTCIFRDNDIIRVKQKASKRITQ 233
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BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: A0A452ZID7_AEGTS (Coilin n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452ZID7_AEGTS)

HSP 1 Score: 61.2 bits (147), Expect = 4.530e-7
Identity = 37/105 (35.24%), Postives = 61/105 (58.10%), Query Frame = 1 
Query:   25 PEMSTSSQPQQLPTPRRIRVIFSAETGCIPLTSPDLVKRWVVVPPELAVIGDLAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIVTVELLAQTR 339
            P M+T   P   P+P R+R++F  +T  +     DL + W+++ PELA + DL+ H+A     +R +    ++LT++GF LPP ES  + R+ DI+ V+  A  R
Sbjct:   25 PPMAT--PPAXXPSPVRLRLVFD-KTRLLRRAQRDLRRCWLLLRPELATVADLSAHVAARFRLHR-SCPGGVVLTMDGFALPPFESTCIFRDKDIIRVQQKACKR 125
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BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: A0A0E0RG41_ORYRU (Coilin n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0RG41_ORYRU)

HSP 1 Score: 62.0 bits (149), Expect = 4.780e-7
Identity = 34/93 (36.56%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:   73 RIRVIFSAETGCI-PLTSPDLVKRWVVVPPELAVIGDLAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIVTVELLAQTRDTQ 348
            R+R++F  +      L    L + W+++PPEL+ + DLA H+A    R R++  S ++L+++GF+LPP ES  + R+ DI+ V+  A  R TQ
Sbjct:   10 RLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARF-RLRRSCPSCVILSIDGFVLPPFESTCIFRDNDIIRVKQKASKRITQ 101
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BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: A0A8I6X8P6_HORVV (Coilin n=2 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6X8P6_HORVV)

HSP 1 Score: 62.0 bits (149), Expect = 4.860e-7
Identity = 33/91 (36.26%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:   49 PQQLPTPRRIRVIFSAETGCIPLTSPDLVKRWVVVPPELAVIGDLAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIVTVE 321
            P+  P+P R+R++F  +T  +     DL + WV++ PELA + DL+ H+A     +R +    ++LT++GF LPP ES  + R+ DI+ V+
Sbjct:    5 PEPSPSPVRLRLVFD-KTRLLRRAQRDLRRCWVLLRPELATVADLSAHVATRFRLHR-SCPGGVVLTMDGFALPPFESTCIFRDKDIIRVK 93
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BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: A0A0P0Y9A7_ORYSJ (Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0Y9A7_ORYSJ)

HSP 1 Score: 56.2 bits (134), Expect = 1.290e-6
Identity = 29/81 (35.80%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:   73 RIRVIFSAETGCI-PLTSPDLVKRWVVVPPELAVIGDLAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIV 312
            R+R++F  +      L    L + W+++PPEL+ + DLA H+A    R R++  S ++L+++GF+LPP ES  + R+ DI+
Sbjct:   10 RLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARF-RLRRSCPSCVILSIDGFVLPPFESTCIFRDNDII 89
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BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: UPI0019D6AB8C (coilin-like isoform X1 n=3 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D6AB8C)

HSP 1 Score: 60.5 bits (145), Expect = 1.530e-6
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = 1 
Query:   49 PQQLPTPRRIRVIFSAETGCIPLTSPD--LVKRWVVVPPELAVIGDLAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIVTVE-----LLAQTRDTQSCRDGEI 369
            P   P P R+R++F      +  T  D  L + W+++ PELA + DLA H+A    R R+  SS ++L+++GF LPP ES  + R+ DI+ V+      L    D  S +D E+
Sbjct:    5 PPDAPAPVRLRLVFE-NRRLLRRTERDEGLRRCWLLLRPELATVADLASHVAARF-RLRRFCSSGIILSMDGFALPPFESTCIFRDNDIIRVKPKSCKKLVGHNDVHSIQDPEV 116
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BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: A0A3B5ZYF5_WHEAT (Coilin n=23 Tax=Triticinae TaxID=1648030 RepID=A0A3B5ZYF5_WHEAT)

HSP 1 Score: 60.5 bits (145), Expect = 1.530e-6
Identity = 34/97 (35.05%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:   49 PQQLPTPRRIRVIFSAETGCIPLTSPDLVKRWVVVPPELAVIGDLAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIVTVELLAQTR 339
            P   P+P R+R++F  +T  +     DL + W+++ PELA + DL+ H+A     +R +    ++LT++GF LPP ES  + R+ DI+ V+  A  R
Sbjct:    5 PAPSPSPVRLRLVFD-KTRLLRRAQRDLRRCWLLLRPELATVADLSAHVAARFRLHR-SCPGGVVLTMDGFALPPFESTCIFRDKDIIRVQQKACKR 99
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BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: A0A3L6G677_MAIZE (Coilin n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6G677_MAIZE)

HSP 1 Score: 57.0 bits (136), Expect = 7.810e-6
Identity = 37/113 (32.74%), Postives = 62/113 (54.87%), Query Frame = 1 
Query:   49 PQQLPTPRRIRVIFSAETGCIPLTSPDLVKR-WVVVPPELAVIGDLAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIVTVELLAQTR-----DTQSCRDGEI 369
            P   P P R+R+IF        +   + ++R W+++ PELA + +LA H+A    R R+T    ++L+++GF LPP ES  + R+ DI+ V+  + T+     D    +D EI
Sbjct:    5 PPAAPAPVRLRLIFENSRLLRRVQRDEGLRRCWLLLSPELATVANLAAHVAARF-RLRRTCPRGVVLSMDGFTLPPFESTCIFRDNDIIRVKQKSCTKHIEHNDVHCIQDHEI 116
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BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: A0A811QXN9_9POAL (Coilin n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811QXN9_9POAL)

HSP 1 Score: 58.2 bits (139), Expect = 9.280e-6
Identity = 37/113 (32.74%), Postives = 63/113 (55.75%), Query Frame = 1 
Query:   49 PQQLPTPRRIRVIFSAETGCIPLTSPDLVKR-WVVVPPELAVIGDLAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIVTVELLAQTR-----DTQSCRDGEI 369
            P  +P P R+R++F        +   + ++R W+++ PELA + DLA H+A    R R+T    ++L+++GF LPP ES  + R+ DI+ V+  + T+     D    +D EI
Sbjct:    5 PPAVPAPVRLRLLFENSRLLRRVQRDEGLRRCWLLLSPELATVADLAAHVAARF-RLRRTCPWGVVLSMDGFTLPPFESTCIFRDNDIIRVKQKSCTKQVGHNDVHCIQDHEI 116
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5L4H0_9PHAE2.550e-2664.77Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
B8BP67_ORYSI2.820e-735.85Coilin n=3 Tax=Oryza sativa TaxID=4530 RepID=B8BP6... [more]
A0A452ZID7_AEGTS4.530e-735.24Coilin n=1 Tax=Aegilops tauschii subsp. strangulat... [more]
A0A0E0RG41_ORYRU4.780e-736.56Coilin n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0RG41_O... [more]
A0A8I6X8P6_HORVV4.860e-736.26Coilin n=2 Tax=Hordeum vulgare subsp. vulgare TaxI... [more]
A0A0P0Y9A7_ORYSJ1.290e-635.80Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=... [more]
UPI0019D6AB8C1.530e-635.09coilin-like isoform X1 n=3 Tax=Panicum virgatum Ta... [more]
A0A3B5ZYF5_WHEAT1.530e-635.05Coilin n=23 Tax=Triticinae TaxID=1648030 RepID=A0A... [more]
A0A3L6G677_MAIZE7.810e-632.74Coilin n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6G67... [more]
A0A811QXN9_9POAL9.280e-632.74Coilin n=1 Tax=Miscanthus lutarioriparius TaxID=42... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig805contigF-serratus_M_contig805:298528..299436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.0
Seed ortholog evalue5.3e-07
Seed eggNOG ortholog38727.Pavir.Ca02149.1.p
KEGG koko:K13150
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0017069,GO:0030619,GO:0030620,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.isoform X1
EggNOG OGs2CND1@1,2QVBB@2759,37KDR@33090,3G93U@35493,3IDIA@38820,3KMPB@4447
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_003890.1
COG Functional cat.S
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons1
Model size909
Cds size879
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932403.198695-UTR-F-serratus_M_contig805:298527..2985571622932403.198695-UTR-F-serratus_M_contig805:298527..298557Fucus serratus maleUTRF-serratus_M_contig805 298528..298557 +
1690964291.5580976-UTR-F-serratus_M_contig805:298527..2985571690964291.5580976-UTR-F-serratus_M_contig805:298527..298557Fucus serratus maleUTRF-serratus_M_contig805 298528..298557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932403.215266-CDS-F-serratus_M_contig805:298557..2994361622932403.215266-CDS-F-serratus_M_contig805:298557..299436Fucus serratus maleCDSF-serratus_M_contig805 298558..299436 +
1690964291.571389-CDS-F-serratus_M_contig805:298557..2994361690964291.571389-CDS-F-serratus_M_contig805:298557..299436Fucus serratus maleCDSF-serratus_M_contig805 298558..299436 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig805.19457.1prot_F-serratus_M_contig805.19457.1Fucus serratus malepolypeptideF-serratus_M_contig805 298558..299436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig805.19457.1

>prot_F-serratus_M_contig805.19457.1 ID=prot_F-serratus_M_contig805.19457.1|Name=mRNA_F-serratus_M_contig805.19457.1|organism=Fucus serratus male|type=polypeptide|length=293bp
MSTSSQPQQLPTPRRIRVIFSAETGCIPLTSPDLVKRWVVVPPELAVIGD
LAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIVTVELLA
QTRDTQSCRDGEIGGRSSSRPLDSGINTTSCLAKKRLGRRLQEQPSGPEE
VDSDAAQSEKVKGKKRPNTRSTKSREKVRLVGARATAPTKAPKGGSTKRR
KIDASSPPGGKGQAVAKRGKMKATFASSTKSKAKKTRASSSAAAVKQRSR
SRSSVHRDADGTSGGGVGAHRGSSRAIPASTTAQKKKPEEGKA
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mRNA from alignment at F-serratus_M_contig805:298528..299436+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig805.19457.1 ID=mRNA_F-serratus_M_contig805.19457.1|Name=mRNA_F-serratus_M_contig805.19457.1|organism=Fucus serratus male|type=mRNA|length=909bp|location=Sequence derived from alignment at F-serratus_M_contig805:298528..299436+ (Fucus serratus male)
GCACTCGAAAGCCTTTGCTCTACTCCAGAGATGTCCACCAGCTCGCAACC
ACAACAATTGCCAACCCCACGCCGAATCCGTGTAATTTTTTCTGCGGAGA
CGGGATGCATACCGTTGACAAGCCCCGATCTGGTGAAGCGTTGGGTGGTG
GTTCCTCCCGAGCTGGCCGTCATCGGTGACCTCGCTCACCACCTTGCGAG
GCTCCTCGAGCGCAACCGCAAGACCGCATCATCTGCTCTCATGCTCACGC
TCGAGGGGTTTATCCTTCCGCCCACGGAGAGCTTGGCTGTTTTGCGAGAA
ACGGATATCGTGACGGTAGAATTGCTTGCGCAGACCCGAGATACTCAAAG
CTGCAGGGATGGGGAAATAGGTGGAAGGAGCTCTTCCAGACCTCTCGATA
GTGGTATAAATACAACGAGTTGTTTAGCGAAGAAAAGATTGGGCCGAAGA
TTGCAGGAGCAGCCTTCTGGCCCCGAGGAAGTGGACTCTGATGCGGCTCA
AAGTGAAAAAGTGAAGGGCAAGAAGAGGCCCAACACTCGGTCCACGAAAT
CTAGAGAGAAGGTTCGATTGGTTGGTGCCAGGGCGACTGCTCCCACAAAG
GCCCCAAAGGGCGGGTCGACGAAGAGAAGGAAGATCGACGCTTCTTCGCC
TCCGGGGGGCAAGGGCCAAGCTGTTGCTAAGAGGGGGAAGATGAAAGCGA
CCTTCGCTTCAAGCACCAAGTCAAAGGCGAAAAAAACGCGCGCCAGCAGC
AGCGCTGCCGCCGTCAAGCAGAGAAGCCGCAGCAGGAGCAGCGTGCATCG
GGACGCTGATGGCACCTCCGGCGGCGGCGTTGGTGCCCATCGCGGTAGCT
CTAGAGCTATCCCTGCATCGACGACGGCCCAAAAGAAAAAGCCAGAGGAA
GGCAAGGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig805:298528..299436+

>mRNA_F-serratus_M_contig805.19457.1 ID=mRNA_F-serratus_M_contig805.19457.1|Name=mRNA_F-serratus_M_contig805.19457.1|organism=Fucus serratus male|type=CDS|length=1758bp|location=Sequence derived from alignment at F-serratus_M_contig805:298528..299436+ (Fucus serratus male)
ATGTCCACCAGCTCGCAACCACAACAATTGCCAACCCCACGCCGAATCCG
TGTAATTTTTTCTGCGGAGACGGGATGCATACCGTTGACAAGCCCCGATC
TGGTGAAGCGTTGGGTGGTGGTTCCTCCCGAGCTGGCCGTCATCGGTGAC
CTCGCTCACCACCTTGCGAGGCTCCTCGAGCGCAACCGCAAGACCGCATC
ATCTGCTCTCATGCTCACGCTCGAGGGGTTTATCCTTCCGCCCACGGAGA
GCTTGGCTGTTTTGCGAGAAACGGATATCGTGACGGTAGAATTGCTTGCG
CAGACCCGAGATACTCAAAGCTGCAGGGATGGGGAAATAGGTGGAAGGAG
CTCTTCCAGACCTCTCGATAGTGGTATAAATACAACGAGTTGTTTAGCGA
AGAAAAGATTGGGCCGAAGATTGCAGGAGCAGCCTTCTGGCCCCGAGGAA
GTGGACTCTGATGCGGCTCAAAGTGAAAAAGTGAAGGGCAAGAAGAGGCC
CAACACTCGGTCCACGAAATCTAGAGAGAAGGTTCGATTGGTTGGTGCCA
GGGCGACTGCTCCCACAAAGGCCCCAAAGGGCGGGTCGACGAAGAGAAGG
AAGATCGACGCTTCTTCGCCTCCGGGGGGCAAGGGCCAAGCTGTTGCTAA
GAGGGGGAAGATGAAAGCGACCTTCGCTTCAAGCACCAAGTCAAAGGCGA
AAAAAACGCGCGCCAGCAGCAGCGCTGCCGCCGTCAAGCAGAGAAGCCGC
AGCAGGAGCAGCGTGCATCGGGACGCTGATGGCACCTCCGGCGGCGGCGT
TGGTGCCCATCGCGGTAGCTCTAGAGCTATCCCTGCATCGACGACGGCCC
AAAAGAAAAAGCCAGAGGAAGGCAAGGCGATGTCCACCAGCTCGCAACCA
CAACAATTGCCAACCCCACGCCGAATCCGTGTAATTTTTTCTGCGGAGAC
GGGATGCATACCGTTGACAAGCCCCGATCTGGTGAAGCGTTGGGTGGTGG
TTCCTCCCGAGCTGGCCGTCATCGGTGACCTCGCTCACCACCTTGCGAGG
CTCCTCGAGCGCAACCGCAAGACCGCATCATCTGCTCTCATGCTCACGCT
CGAGGGGTTTATCCTTCCGCCCACGGAGAGCTTGGCTGTTTTGCGAGAAA
CGGATATCGTGACGGTAGAATTGCTTGCGCAGACCCGAGATACTCAAAGC
TGCAGGGATGGGGAAATAGGTGGAAGGAGCTCTTCCAGACCTCTCGATAG
TGGTATAAATACAACGAGTTGTTTAGCGAAGAAAAGATTGGGCCGAAGAT
TGCAGGAGCAGCCTTCTGGCCCCGAGGAAGTGGACTCTGATGCGGCTCAA
AGTGAAAAAGTGAAGGGCAAGAAGAGGCCCAACACTCGGTCCACGAAATC
TAGAGAGAAGGTTCGATTGGTTGGTGCCAGGGCGACTGCTCCCACAAAGG
CCCCAAAGGGCGGGTCGACGAAGAGAAGGAAGATCGACGCTTCTTCGCCT
CCGGGGGGCAAGGGCCAAGCTGTTGCTAAGAGGGGGAAGATGAAAGCGAC
CTTCGCTTCAAGCACCAAGTCAAAGGCGAAAAAAACGCGCGCCAGCAGCA
GCGCTGCCGCCGTCAAGCAGAGAAGCCGCAGCAGGAGCAGCGTGCATCGG
GACGCTGATGGCACCTCCGGCGGCGGCGTTGGTGCCCATCGCGGTAGCTC
TAGAGCTATCCCTGCATCGACGACGGCCCAAAAGAAAAAGCCAGAGGAAG
GCAAGGCG
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