mRNA_F-serratus_M_contig8038.19433.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8038.19433.1
Unique NamemRNA_F-serratus_M_contig8038.19433.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig8038.19433.1 vs. uniprot
Match: A0A835XMA9_9CHLO (Protein kinase domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XMA9_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 4.870e-8
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 1
Query:   31 IRSLSRLLHGAACGLAHVHSCGKVHGDVKPSNVLIVPNDTDGDTITFTAKIADFGFTVGKTRATNYERLASVSD 252
            IR + R L   A G+AH+HS G VHGD+KP+NVL+  N  D     F AK++DFG T      TN +   S SD
Sbjct:  928 IRGIVRTLTEVAQGMAHLHSSGLVHGDLKPANVLLKANSRD--LRGFIAKVSDFGVTRAVAEGTN-QATVSTSD 998          
BLAST of mRNA_F-serratus_M_contig8038.19433.1 vs. uniprot
Match: A0A150GV95_GONPE (Protein kinase domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GV95_GONPE)

HSP 1 Score: 57.4 bits (137), Expect = 1.210e-7
Identity = 32/74 (43.24%), Postives = 43/74 (58.11%), Query Frame = 1
Query:   31 IRSLSRLLHGAACGLAHVHSCGKVHGDVKPSNVLIVPNDTDGDTITFTAKIADFGFTVGKTRATNYERLASVSD 252
            +R++ R L   A G+AH+HS G VHGD+KP+NVL+  N  D     F AK++DFG T       N +   S SD
Sbjct:  363 VRAIVRTLLEVAQGMAHLHSAGLVHGDLKPANVLLKSNSRD--VREFVAKVSDFGVTRAMADGVN-QATVSTSD 433          
BLAST of mRNA_F-serratus_M_contig8038.19433.1 vs. uniprot
Match: A0A086STZ6_ACRC1 (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like protein n=1 Tax=Acremonium chrysogenum (strain ATCC 11550 / CBS 779.69 / DSM 880 / IAM 14645 / JCM 23072 / IMI 49137) TaxID=857340 RepID=A0A086STZ6_ACRC1)

HSP 1 Score: 57.0 bits (136), Expect = 1.690e-7
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 1
Query:   10 PPVVVLYIRSLSRLLHGAACGLAHVHSCGKVHGDVKPSNVLIVPNDTDGDTITFTAKIADF 192
            P +  L  R+ +RL H  A GLA +H CG +HGDVKP N+L+ P   +  TI   AK++DF
Sbjct:  175 PNLFSLSFRTKARLCHDVAEGLAFLHGCGIIHGDVKPENILLFPRGEEDSTIPL-AKLSDF 234          
BLAST of mRNA_F-serratus_M_contig8038.19433.1 vs. uniprot
Match: A0A8H6XP75_9AGAR (Serine/threonine protein kinase n=1 Tax=Mycena venus TaxID=2733690 RepID=A0A8H6XP75_9AGAR)

HSP 1 Score: 56.2 bits (134), Expect = 3.180e-7
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   46 RLLHGAACGLAHVHSCGKVHGDVKPSNVLIVPNDTDGDTITFTAKIADFGFTV 204
            +L H  A GLA +H+C  VHGD+K  NVL+  N T    +T+TAK+ADFG +V
Sbjct:  189 KLCHDVAKGLAILHACDIVHGDLKHENVLVFRNKTPDAQVTYTAKLADFGGSV 241          
BLAST of mRNA_F-serratus_M_contig8038.19433.1 vs. uniprot
Match: A0A2I4FL67_JUGRE (mitogen-activated protein kinase kinase kinase 18-like n=6 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4FL67_JUGRE)

HSP 1 Score: 53.5 bits (127), Expect = 2.640e-6
Identity = 25/42 (59.52%), Postives = 28/42 (66.67%), Query Frame = 1
Query:   70 GLAHVHSCGKVHGDVKPSNVLIVPNDTDGDTITFTAKIADFG 195
            GL H+H CG VH D+KP NVL+VPN T G    F AKI D G
Sbjct:  135 GLIHIHDCGYVHCDIKPENVLLVPNATSGGG-NFVAKIGDLG 175          
BLAST of mRNA_F-serratus_M_contig8038.19433.1 vs. uniprot
Match: A0A1J6IN76_NICAT (Mitogen-activated protein kinase kinase kinase yoda n=4 Tax=Nicotiana TaxID=4085 RepID=A0A1J6IN76_NICAT)

HSP 1 Score: 53.5 bits (127), Expect = 2.660e-6
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 1
Query:   28 YIRSLSRLLHGAACGLAHVHSCGKVHGDVKPSNVLIVPNDTDGDTITFTAKIADFGFTVGKTRA 219
            Y RS+ R LH        +H+ G VH D+KP NVL+VPN +DG+   F AKI D G    +T++
Sbjct:  124 YTRSMLRGLH-------FIHTIGYVHCDMKPDNVLLVPNSSDGNGAEFRAKIGDLGLAKRETQS 180          
BLAST of mRNA_F-serratus_M_contig8038.19433.1 vs. uniprot
Match: UPI001EEB3427 (serine/threonine-protein kinase n=1 Tax=Kitasatospora sp. A2-31 TaxID=2916414 RepID=UPI001EEB3427)

HSP 1 Score: 53.1 bits (126), Expect = 3.710e-6
Identity = 26/57 (45.61%), Postives = 34/57 (59.65%), Query Frame = 1
Query:   31 IRSLSRLLHGAACGLAHVHSCGKVHGDVKPSNVLIVPNDTDGDTITFTAKIADFGFT 201
            +    RLL     GL H+H+ G VHGD+KP NVL++P+ T        AK+ADFG T
Sbjct:  118 VPDADRLLAEVCAGLTHMHAAGWVHGDLKPGNVLLMPDGT--------AKLADFGLT 166          
BLAST of mRNA_F-serratus_M_contig8038.19433.1 vs. uniprot
Match: A0A8B6DYP3_MYTGA (Non-specific serine/threonine protein kinase n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6DYP3_MYTGA)

HSP 1 Score: 53.1 bits (126), Expect = 3.820e-6
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:   46 RLLHGAACGLAHVHSCGKVHGDVKPSNVLIVPNDTDGDTITFTAKIADFG 195
            +LLH AA G+AH+HS G VH D+KP NVLI   DT G+     A I+DFG
Sbjct:  558 QLLHQAASGIAHLHSLGIVHRDIKPHNVLISQPDTGGNV---KALISDFG 604          
BLAST of mRNA_F-serratus_M_contig8038.19433.1 vs. uniprot
Match: UPI000AD782E7 (protein kinase n=2 Tax=Streptomycetaceae TaxID=2062 RepID=UPI000AD782E7)

HSP 1 Score: 52.8 bits (125), Expect = 4.630e-6
Identity = 26/57 (45.61%), Postives = 35/57 (61.40%), Query Frame = 1
Query:   31 IRSLSRLLHGAACGLAHVHSCGKVHGDVKPSNVLIVPNDTDGDTITFTAKIADFGFT 201
            +    R+L     GL+H+H  G VHGD+KP+NVL++P+ T        AKIADFG T
Sbjct:  159 VPGAERILAEVCAGLSHMHRVGWVHGDLKPANVLLMPDGT--------AKIADFGLT 207          
BLAST of mRNA_F-serratus_M_contig8038.19433.1 vs. uniprot
Match: A0A5P0YW43_9ACTN (Protein kinase n=2 Tax=Streptomyces TaxID=1883 RepID=A0A5P0YW43_9ACTN)

HSP 1 Score: 52.8 bits (125), Expect = 5.020e-6
Identity = 30/70 (42.86%), Postives = 39/70 (55.71%), Query Frame = 1
Query:   43 SRLLHGAACGLAHVHSCGKVHGDVKPSNVLIVPNDTDGDTITFTAKIADFGFTVGKTRATNYERLASVSD 252
            +RLL     GLA +H  G VHGD+KP+NVL+VP   DGD+ T + ++ADF   V       Y    S  D
Sbjct:  134 ARLLAEICEGLAQLHQAGWVHGDLKPANVLLVP---DGDSGTGSVRLADFNLAVEMEGTHGYSPAFSTPD 200          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8038.19433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835XMA9_9CHLO4.870e-845.95Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A150GV95_GONPE1.210e-743.24Protein kinase domain-containing protein n=1 Tax=G... [more]
A0A086STZ6_ACRC11.690e-745.90Serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A8H6XP75_9AGAR3.180e-750.94Serine/threonine protein kinase n=1 Tax=Mycena ven... [more]
A0A2I4FL67_JUGRE2.640e-659.52mitogen-activated protein kinase kinase kinase 18-... [more]
A0A1J6IN76_NICAT2.660e-643.75Mitogen-activated protein kinase kinase kinase yod... [more]
UPI001EEB34273.710e-645.61serine/threonine-protein kinase n=1 Tax=Kitasatosp... [more]
A0A8B6DYP3_MYTGA3.820e-656.00Non-specific serine/threonine protein kinase n=1 T... [more]
UPI000AD782E74.630e-645.61protein kinase n=2 Tax=Streptomycetaceae TaxID=206... [more]
A0A5P0YW43_9ACTN5.020e-642.86Protein kinase n=2 Tax=Streptomyces TaxID=1883 Rep... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8038contigF-serratus_M_contig8038:10923..11183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932399.3256264-CDS-F-serratus_M_contig8038:10922..111831622932399.3256264-CDS-F-serratus_M_contig8038:10922..11183Fucus serratus maleCDSF-serratus_M_contig8038 10923..11183 +
1690964290.1392305-CDS-F-serratus_M_contig8038:10922..111831690964290.1392305-CDS-F-serratus_M_contig8038:10922..11183Fucus serratus maleCDSF-serratus_M_contig8038 10923..11183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8038.19433.1prot_F-serratus_M_contig8038.19433.1Fucus serratus malepolypeptideF-serratus_M_contig8038 10923..11183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8038.19433.1

>prot_F-serratus_M_contig8038.19433.1 ID=prot_F-serratus_M_contig8038.19433.1|Name=mRNA_F-serratus_M_contig8038.19433.1|organism=Fucus serratus male|type=polypeptide|length=87bp
AIAPPVVVLYIRSLSRLLHGAACGLAHVHSCGKVHGDVKPSNVLIVPNDT
DGDTITFTAKIADFGFTVGKTRATNYERLASVSDRA*
back to top

mRNA from alignment at F-serratus_M_contig8038:10923..11183+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8038.19433.1 ID=mRNA_F-serratus_M_contig8038.19433.1|Name=mRNA_F-serratus_M_contig8038.19433.1|organism=Fucus serratus male|type=mRNA|length=261bp|location=Sequence derived from alignment at F-serratus_M_contig8038:10923..11183+ (Fucus serratus male)
GCGATCGCACCCCCGGTGGTTGTGTTGTACATTCGGTCATTATCCAGGCT TCTTCATGGTGCCGCATGTGGCCTGGCCCACGTCCACTCCTGTGGCAAGG TTCACGGTGATGTGAAGCCATCGAACGTATTAATCGTCCCAAACGATACA GATGGGGACACTATCACGTTTACGGCAAAAATCGCCGACTTCGGCTTCAC CGTTGGTAAGACAAGAGCCACGAATTACGAACGTCTCGCCTCGGTCAGTG ATCGTGCCTAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig8038:10923..11183+

>mRNA_F-serratus_M_contig8038.19433.1 ID=mRNA_F-serratus_M_contig8038.19433.1|Name=mRNA_F-serratus_M_contig8038.19433.1|organism=Fucus serratus male|type=CDS|length=522bp|location=Sequence derived from alignment at F-serratus_M_contig8038:10923..11183+ (Fucus serratus male)
GCGATCGCACCCCCGGTGGTTGTGTTGTACATTCGGTCATTATCCAGGCT
TCTTCATGGTGCCGCATGTGGCCTGGCCCACGTCCACTCCTGTGGCAAGG
TTCACGGTGATGTGAAGCCATCGAACGTATTAATCGTCCCAAACGATACA
GATGGGGACACTATCACGTTTACGGCAAAAATCGCCGACTTCGGCTTCAC
CGTTGGTAAGACAAGAGCCACGAATTACGAACGTCTCGCCTCGGTCAGTG
ATCGTGCCTAGGCGATCGCACCCCCGGTGGTTGTGTTGTACATTCGGTCA
TTATCCAGGCTTCTTCATGGTGCCGCATGTGGCCTGGCCCACGTCCACTC
CTGTGGCAAGGTTCACGGTGATGTGAAGCCATCGAACGTATTAATCGTCC
CAAACGATACAGATGGGGACACTATCACGTTTACGGCAAAAATCGCCGAC
TTCGGCTTCACCGTTGGTAAGACAAGAGCCACGAATTACGAACGTCTCGC
CTCGGTCAGTGATCGTGCCTAG
back to top