mRNA_F-serratus_M_contig8029.19431.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8029.19431.1
Unique NamemRNA_F-serratus_M_contig8029.19431.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8029.19431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8029contigF-serratus_M_contig8029:4760..5780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size435
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8029.19431.1prot_F-serratus_M_contig8029.19431.1Fucus serratus malepolypeptideF-serratus_M_contig8029 4760..5576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932399.1763613-CDS-F-serratus_M_contig8029:4759..48061622932399.1763613-CDS-F-serratus_M_contig8029:4759..4806Fucus serratus maleCDSF-serratus_M_contig8029 4760..4806 -
1690964290.06679-CDS-F-serratus_M_contig8029:4759..48061690964290.06679-CDS-F-serratus_M_contig8029:4759..4806Fucus serratus maleCDSF-serratus_M_contig8029 4760..4806 -
1622932399.197549-CDS-F-serratus_M_contig8029:5005..51451622932399.197549-CDS-F-serratus_M_contig8029:5005..5145Fucus serratus maleCDSF-serratus_M_contig8029 5006..5145 -
1690964290.0817003-CDS-F-serratus_M_contig8029:5005..51451690964290.0817003-CDS-F-serratus_M_contig8029:5005..5145Fucus serratus maleCDSF-serratus_M_contig8029 5006..5145 -
1622932399.2113261-CDS-F-serratus_M_contig8029:5532..55761622932399.2113261-CDS-F-serratus_M_contig8029:5532..5576Fucus serratus maleCDSF-serratus_M_contig8029 5533..5576 -
1690964290.0964818-CDS-F-serratus_M_contig8029:5532..55761690964290.0964818-CDS-F-serratus_M_contig8029:5532..5576Fucus serratus maleCDSF-serratus_M_contig8029 5533..5576 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932399.2245247-UTR-F-serratus_M_contig8029:5576..57801622932399.2245247-UTR-F-serratus_M_contig8029:5576..5780Fucus serratus maleUTRF-serratus_M_contig8029 5577..5780 -
1690964290.1065285-UTR-F-serratus_M_contig8029:5576..57801690964290.1065285-UTR-F-serratus_M_contig8029:5576..5780Fucus serratus maleUTRF-serratus_M_contig8029 5577..5780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8029.19431.1

>prot_F-serratus_M_contig8029.19431.1 ID=prot_F-serratus_M_contig8029.19431.1|Name=mRNA_F-serratus_M_contig8029.19431.1|organism=Fucus serratus male|type=polypeptide|length=77bp
MWTGCSGDGSDWRNGLWEALEVAFMDSGGPYAKLKEMKADDVTLDEAEKN
FMPYLSDAEKLFVPETQDVHHELSDT*
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mRNA from alignment at F-serratus_M_contig8029:4760..5780-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8029.19431.1 ID=mRNA_F-serratus_M_contig8029.19431.1|Name=mRNA_F-serratus_M_contig8029.19431.1|organism=Fucus serratus male|type=mRNA|length=1021bp|location=Sequence derived from alignment at F-serratus_M_contig8029:4760..5780- (Fucus serratus male)
TCTCGTTCTCTCTCCCTTCCTGTTTCCCACGTACGATAGGTCATACCAAA
CGCCATAGACTTGACGCTGAAGTATACTTCACAGGTCAAATGCGAGACCG
AGGGCCCACCTCCCACGCCTTCTTTGGCCATTCTGACCAAAGCTTATGCA
CTATTCGGCCTTTCGGACAACGGCGAGGAAGCCCTTGAAAGCAAGCCGGG
CAAAATGTGGACGGGGTGCAGTGGGGACGGGAGCGATTGGAGAAACGGGT
GAGGATCAACTTGGATTAGGTGTACGATAGAATTTATATTACAGTGATCA
CGTGTTACACCAGTTCGACCTGCTTTGAGAGCCAATAAAAAATACATACG
ACACTCCAAGTATGGCCGGAGAGGTTCATGCATGTTTGTTTAATCCAGAG
CGTGTTTTGTTTTGGATCCCGGTAATTAAACAACGAATCGGCTCGGTCGT
CTCCACATTCACGAAGTCATCGGTACACGGACCGTCGATCAACCCTACTA
ATAGGACGCCGAAACCAGAAAAAGACTTGCACCTCTGCCAACATGCCTCA
GTCGTATCTAATTGTGTGGCTCTTGGTGGGTACTACACCGCGCATTGTTC
ACAGCTCCCGCTTCGTACACTTGGAAATGGAACATATTGTGGGAGGCCCT
CGAGGTTGCCTTCATGGACTCGGGTGGCCCCTACGCAAAACTCAAGGAAA
TGAAAGCTGATGACGTTACCCTAGATGAGGCGGAAAAAAATTTCATGCCT
TACCTCAGCGACGCCGAGAAACTCTGTGAGTATTGATAAACGATCAGTTT
CTTCGCTGTTCACCACACTTTCTTGTGCATCAGGCTCCGCGCTGAAAACG
GCTAACATAGTATAGAATTTGTGTTAACATTTTACAACACATTGGGCGCT
TCGCCACACAAAACCCGTCTCACGAGACAAAAACATCTCCGCCGCCTTCC
TTTCCTGCATCTTTTCTCTTACAGTTGTGCCAGAAACACAAGACGTACAC
CACGAGTTGTCCGATACCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig8029:4760..5780-

>mRNA_F-serratus_M_contig8029.19431.1 ID=mRNA_F-serratus_M_contig8029.19431.1|Name=mRNA_F-serratus_M_contig8029.19431.1|organism=Fucus serratus male|type=CDS|length=462bp|location=Sequence derived from alignment at F-serratus_M_contig8029:4760..5780- (Fucus serratus male)
ATGTGGACGGGGTGCAGTGGGGACGGGAGCGATTGGAGAAACGGATGTGG
ACGGGGTGCAGTGGGGACGGGAGCGATTGGAGAAACGGATTGTGGGAGGC
CCTCGAGGTTGCCTTCATGGACTCGGGTGGCCCCTACGCAAAACTCAAGG
AAATGAAAGCTGATGACGTTACCCTAGATGAGGCGGAAAAAAATTTCATG
CCTTACCTCAGCGACGCCGAGAAACTCTATTGTGGGAGGCCCTCGAGGTT
GCCTTCATGGACTCGGGTGGCCCCTACGCAAAACTCAAGGAAATGAAAGC
TGATGACGTTACCCTAGATGAGGCGGAAAAAAATTTCATGCCTTACCTCA
GCGACGCCGAGAAACTCTTTGTGCCAGAAACACAAGACGTACACCACGAG
TTGTCCGATACCTGATTGTGCCAGAAACACAAGACGTACACCACGAGTTG
TCCGATACCTGA
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