mRNA_F-serratus_M_contig802.19427.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig802.19427.1
Unique NamemRNA_F-serratus_M_contig802.19427.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig802.19427.1 vs. uniprot
Match: D7FZ29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ29_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.150e-17
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:    4 DGSDTILKYIAHGSLPEGIPEITTPNRILADVVNANKN------GNGDDPSDATVLVVAKATAKTLGYTI-MDNEDALLCLHAEDGTPSPLDSHEIPIWGNPIVYDSR 306
            DGS + + YI+HGSLP+GIPE TTPNRILADV     N       +G  P +  +L  A+A A+ +G+ I ++++D L  L A + T      ++IP+ GNP+VYDS 
Sbjct:  381 DGSASEITYISHGSLPDGIPETTTPNRILADVNTRTNNLREGGSVDGATPDERALLGAAQAIAEQMGWVIKVNSDDDLPYLCARNKTSYQTTHNDIPVSGNPVVYDSH 488
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BLAST of mRNA_F-serratus_M_contig802.19427.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.680e-16
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:    4 DGSDTILKYIAHGSLPEGIPEITTPNRILADVVNANKN------GNGDDPSDATVLVVAKATAKTLGYTIMDNE-DALLCLHAEDGTPSPLDSHEIPIWGNPIVYDSRQ 309
            DG  + + YI+HGSLP+GIPEITTP+RILADV     N       +G  P +  +L  A+A A+ +G+ I  N  D L  L A + T      ++IP+WG  +VYDS +
Sbjct:  882 DGDASEITYISHGSLPDGIPEITTPHRILADVNTRTNNLREGGRVDGTTPDERALLGAAQAIAEQMGWAIKVNPVDDLPYLCARNKTSYRTAHNDIPVWGKTVVYDSHR 990
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig802.19427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZ29_ECTSI2.150e-1743.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK41_9PHAE2.680e-1642.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig802contigF-serratus_M_contig802:303305..304012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size310
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932398.9751785-CDS-F-serratus_M_contig802:303305..3034161622932398.9751785-CDS-F-serratus_M_contig802:303305..303416Fucus serratus maleCDSF-serratus_M_contig802 303306..303416 -
1690964289.964752-CDS-F-serratus_M_contig802:303305..3034161690964289.964752-CDS-F-serratus_M_contig802:303305..303416Fucus serratus maleCDSF-serratus_M_contig802 303306..303416 -
1622932398.99471-CDS-F-serratus_M_contig802:303814..3040121622932398.99471-CDS-F-serratus_M_contig802:303814..304012Fucus serratus maleCDSF-serratus_M_contig802 303815..304012 -
1690964289.9739263-CDS-F-serratus_M_contig802:303814..3040121690964289.9739263-CDS-F-serratus_M_contig802:303814..304012Fucus serratus maleCDSF-serratus_M_contig802 303815..304012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig802.19427.1prot_F-serratus_M_contig802.19427.1Fucus serratus malepolypeptideF-serratus_M_contig802 303306..304012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig802.19427.1

>prot_F-serratus_M_contig802.19427.1 ID=prot_F-serratus_M_contig802.19427.1|Name=mRNA_F-serratus_M_contig802.19427.1|organism=Fucus serratus male|type=polypeptide|length=103bp
RDGSDTILKYIAHGSLPEGIPEITTPNRILADVVNANKNGNGDDPSDATV
LVVAKATAKTLGYTIMDNEDALLCLHAEDGTPSPLDSHEIPIWGNPIVYD
SRQ
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mRNA from alignment at F-serratus_M_contig802:303305..304012-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig802.19427.1 ID=mRNA_F-serratus_M_contig802.19427.1|Name=mRNA_F-serratus_M_contig802.19427.1|organism=Fucus serratus male|type=mRNA|length=708bp|location=Sequence derived from alignment at F-serratus_M_contig802:303305..304012- (Fucus serratus male)
CGGGACGGATCGGACACCATCTTGAAGTACATTGCCCACGGCTCACTACC
GGAGGGTATCCCGGAGATCACGACGCCTAACCGTATTCTTGCTGACGTCG
TAAACGCGAATAAGAATGGCAACGGCGATGATCCATCTGACGCGACTGTT
CTAGTGGTTGCAAAAGCAACTGCTAAAACCCTAGGATACACCATCATGGT
GGGAAGGAATAGTGGTGGTTAGTCAGTTACCGTGTGCTGGCTTTTTAAGC
TTAGTCGGGACTTAAAGGAAGCACTACTACCCTTTTCCCCTTTCTCCTCC
CCTCCCCCCCATCGTCTACGTGTTCATTTGTTGTTTCACCCGGGTCTGGC
CGACTACGCTGCGAAGCTACTTAATAGTATCGCAAACTACTGTATACCGT
ATTACTCTACCTTCCCTTAATTTTCTATGCCGGACGTTGCTTCTCTTTGA
CATGGCACACGTGCTGTTTGAATTGTTTTCAAGTGCAGCTTGCATGTTTC
GTAATTGCAATTCTGCTCCTCCAGCATTGTTCTTGGTGATGCCTGAAATG
TTTTACCCACTCTGTCGCTTGCTGCTTTTCAATGAACCCCGCGCAGGACA
ACGAGGACGCATTGCTCTGCTTGCACGCCGAAGACGGCACACCGTCCCCG
CTCGACAGCCACGAAATCCCCATTTGGGGCAACCCCATTGTCTATGATTC
CCGTCAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig802:303305..304012-

>mRNA_F-serratus_M_contig802.19427.1 ID=mRNA_F-serratus_M_contig802.19427.1|Name=mRNA_F-serratus_M_contig802.19427.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig802:303305..304012- (Fucus serratus male)
CGGGACGGATCGGACACCATCTTGAAGTACATTGCCCACGGCTCACTACC
GGAGGGTATCCCGGAGATCACGACGCCTAACCGTATTCTTGCTGACGTCG
TAAACGCGAATAAGAATGGCAACGGCGATGATCCATCTGACGCGACTGTT
CTAGTGGTTGCAAAAGCAACTGCTAAAACCCTAGGATACACCATCATGCG
GGACGGATCGGACACCATCTTGAAGTACATTGCCCACGGCTCACTACCGG
AGGGTATCCCGGAGATCACGACGCCTAACCGTATTCTTGCTGACGTCGTA
AACGCGAATAAGAATGGCAACGGCGATGATCCATCTGACGCGACTGTTCT
AGTGGTTGCAAAAGCAACTGCTAAAACCCTAGGATACACCATCATGGACA
ACGAGGACGCATTGCTCTGCTTGCACGCCGAAGACGGCACACCGTCCCCG
CTCGACAGCCACGAAATCCCCATTTGGGGCAACCCCATTGTCTATGATTC
CCGTCAGGACAACGAGGACGCATTGCTCTGCTTGCACGCCGAAGACGGCA
CACCGTCCCCGCTCGACAGCCACGAAATCCCCATTTGGGGCAACCCCATT
GTCTATGATTCCCGTCAG
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