mRNA_F-serratus_M_contig800.19409.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig800.19409.1
Unique NamemRNA_F-serratus_M_contig800.19409.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig800.19409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig800contigF-serratus_M_contig800:113820..114416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size597
Cds size597
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932394.9477673-CDS-F-serratus_M_contig800:113819..1144161622932394.9477673-CDS-F-serratus_M_contig800:113819..114416Fucus serratus maleCDSF-serratus_M_contig800 113820..114416 -
1690964287.6748626-CDS-F-serratus_M_contig800:113819..1144161690964287.6748626-CDS-F-serratus_M_contig800:113819..114416Fucus serratus maleCDSF-serratus_M_contig800 113820..114416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig800.19409.1prot_F-serratus_M_contig800.19409.1Fucus serratus malepolypeptideF-serratus_M_contig800 113820..114416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig800.19409.1

>prot_F-serratus_M_contig800.19409.1 ID=prot_F-serratus_M_contig800.19409.1|Name=mRNA_F-serratus_M_contig800.19409.1|organism=Fucus serratus male|type=polypeptide|length=199bp
MDRRVGLTPAATRSTIEKSLPIKIDFEEISGEPEDWTAWSKVYRAQPSAL
GCADTLTETAGRKTKVNRDDFDRGSVDPDQLHKLQQACAALVTSCKGVVF
NILSAEESASGTWTKLVQHYQASGLKERRLITIGFCMMKMELREHPRKFL
LRVDQMVKELERVDQPVDPKDIGITLLNGLTPQYDAEVRMLESSSDWPT
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mRNA from alignment at F-serratus_M_contig800:113820..114416-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig800.19409.1 ID=mRNA_F-serratus_M_contig800.19409.1|Name=mRNA_F-serratus_M_contig800.19409.1|organism=Fucus serratus male|type=mRNA|length=597bp|location=Sequence derived from alignment at F-serratus_M_contig800:113820..114416- (Fucus serratus male)
ATGGATAGAAGAGTTGGCCTGACCCCCGCCGCTACGAGATCTACGATTGA
GAAGTCCCTTCCGATCAAGATCGACTTCGAGGAAATCTCCGGGGAACCCG
AGGACTGGACAGCGTGGTCCAAGGTCTACCGTGCTCAACCATCGGCGCTC
GGATGTGCCGATACGCTTACGGAAACCGCGGGCAGAAAAACGAAGGTAAA
TCGCGACGATTTCGATCGCGGCAGCGTCGACCCGGACCAATTACACAAAC
TACAACAAGCCTGTGCTGCATTGGTCACTTCATGCAAAGGAGTCGTGTTC
AATATCTTGAGTGCGGAAGAGTCAGCCAGCGGGACATGGACCAAGCTCGT
GCAGCACTACCAGGCCAGCGGACTCAAGGAGCGCCGACTTATCACCATTG
GTTTCTGCATGATGAAAATGGAGTTGAGAGAACACCCACGAAAGTTCCTG
CTTCGCGTGGATCAAATGGTGAAGGAGCTGGAGCGAGTGGACCAGCCCGT
GGACCCAAAAGACATAGGCATCACCCTCCTGAACGGACTTACGCCGCAGT
ACGACGCCGAAGTTCGCATGCTAGAGAGCTCGTCGGACTGGCCCACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig800:113820..114416-

>mRNA_F-serratus_M_contig800.19409.1 ID=mRNA_F-serratus_M_contig800.19409.1|Name=mRNA_F-serratus_M_contig800.19409.1|organism=Fucus serratus male|type=CDS|length=1194bp|location=Sequence derived from alignment at F-serratus_M_contig800:113820..114416- (Fucus serratus male)
ATGGATAGAAGAGTTGGCCTGACCCCCGCCGCTACGAGATCTACGATTGA
GAAGTCCCTTCCGATCAAGATCGACTTCGAGGAAATCTCCGGGGAACCCG
AGGACTGGACAGCGTGGTCCAAGGTCTACCGTGCTCAACCATCGGCGCTC
GGATGTGCCGATACGCTTACGGAAACCGCGGGCAGAAAAACGAAGGTAAA
TCGCGACGATTTCGATCGCGGCAGCGTCGACCCGGACCAATTACACAAAC
TACAACAAGCCTGTGCTGCATTGGTCACTTCATGCAAAGGAGTCGTGTTC
AATATCTTGAGTGCGGAAGAGTCAGCCAGCGGGACATGGACCAAGCTCGT
GCAGCACTACCAGGCCAGCGGACTCAAGGAGCGCCGACTTATCACCATTG
GTTTCTGCATGATGAAAATGGAGTTGAGAGAACACCCACGAAAGTTCCTG
CTTCGCGTGGATCAAATGGTGAAGGAGCTGGAGCGAGTGGACCAGCCCGT
GGACCCAAAAGACATAGGCATCACCCTCCTGAACGGACTTACGCCGCAGT
ACGACGCCGAAGTTCGCATGCTAGAGAGCTCGTCGGACTGGCCCACGATG
GATAGAAGAGTTGGCCTGACCCCCGCCGCTACGAGATCTACGATTGAGAA
GTCCCTTCCGATCAAGATCGACTTCGAGGAAATCTCCGGGGAACCCGAGG
ACTGGACAGCGTGGTCCAAGGTCTACCGTGCTCAACCATCGGCGCTCGGA
TGTGCCGATACGCTTACGGAAACCGCGGGCAGAAAAACGAAGGTAAATCG
CGACGATTTCGATCGCGGCAGCGTCGACCCGGACCAATTACACAAACTAC
AACAAGCCTGTGCTGCATTGGTCACTTCATGCAAAGGAGTCGTGTTCAAT
ATCTTGAGTGCGGAAGAGTCAGCCAGCGGGACATGGACCAAGCTCGTGCA
GCACTACCAGGCCAGCGGACTCAAGGAGCGCCGACTTATCACCATTGGTT
TCTGCATGATGAAAATGGAGTTGAGAGAACACCCACGAAAGTTCCTGCTT
CGCGTGGATCAAATGGTGAAGGAGCTGGAGCGAGTGGACCAGCCCGTGGA
CCCAAAAGACATAGGCATCACCCTCCTGAACGGACTTACGCCGCAGTACG
ACGCCGAAGTTCGCATGCTAGAGAGCTCGTCGGACTGGCCCACG
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