mRNA_F-serratus_M_contig80.19406.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig80.19406.1
Unique NamemRNA_F-serratus_M_contig80.19406.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig80.19406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig80contigF-serratus_M_contig80:879830..880238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size410
Cds size408
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932386.4511018-UTR-F-serratus_M_contig80:879829..8798301622932386.4511018-UTR-F-serratus_M_contig80:879829..879830Fucus serratus maleUTRF-serratus_M_contig80 879830..879830 +
1690964283.4088628-UTR-F-serratus_M_contig80:879829..8798301690964283.4088628-UTR-F-serratus_M_contig80:879829..879830Fucus serratus maleUTRF-serratus_M_contig80 879830..879830 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932386.510152-CDS-F-serratus_M_contig80:879830..8802381622932386.510152-CDS-F-serratus_M_contig80:879830..880238Fucus serratus maleCDSF-serratus_M_contig80 879831..880238 +
1690964283.4178944-CDS-F-serratus_M_contig80:879830..8802381690964283.4178944-CDS-F-serratus_M_contig80:879830..880238Fucus serratus maleCDSF-serratus_M_contig80 879831..880238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig80.19406.1prot_F-serratus_M_contig80.19406.1Fucus serratus malepolypeptideF-serratus_M_contig80 879831..880238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig80.19406.1

>prot_F-serratus_M_contig80.19406.1 ID=prot_F-serratus_M_contig80.19406.1|Name=mRNA_F-serratus_M_contig80.19406.1|organism=Fucus serratus male|type=polypeptide|length=136bp
MKSSQTQNENTSYGPSVGFIITNIGPPVLSWPANFSKMGRSSVSVPSVSV
FYAELGEDVLDLALEARSLPVKTNYTVWEIFESRNKTTRKTFCNNGHCRQ
SELSFDPQFLVHFVVVCNSITHLHHDTLFQKESQKG
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mRNA from alignment at F-serratus_M_contig80:879830..880238+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig80.19406.1 ID=mRNA_F-serratus_M_contig80.19406.1|Name=mRNA_F-serratus_M_contig80.19406.1|organism=Fucus serratus male|type=mRNA|length=409bp|location=Sequence derived from alignment at F-serratus_M_contig80:879830..880238+ (Fucus serratus male)
AATGAAATCCTCGCAGACCCAAAACGAAAACACTTCCTACGGTCCCAGCG
TTGGATTCATCATTACAAATATCGGCCCACCGGTACTATCTTGGCCGGCC
AATTTCTCGAAGATGGGACGGTCTTCTGTCAGCGTGCCGTCCGTAAGCGT
CTTCTACGCTGAACTGGGAGAGGATGTTCTTGATCTTGCGCTCGAGGCTC
GAAGTCTACCTGTCAAAACAAATTATACTGTATGGGAAATTTTCGAATCC
AGAAACAAAACCACGCGCAAGACATTTTGCAATAATGGACACTGTCGTCA
ATCAGAACTGTCGTTCGATCCTCAGTTTCTCGTCCATTTTGTAGTTGTCT
GTAACTCGATCACACACCTTCATCATGACACCCTTTTTCAAAAGGAAAGT
CAGAAGGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig80:879830..880238+

>mRNA_F-serratus_M_contig80.19406.1 ID=mRNA_F-serratus_M_contig80.19406.1|Name=mRNA_F-serratus_M_contig80.19406.1|organism=Fucus serratus male|type=CDS|length=816bp|location=Sequence derived from alignment at F-serratus_M_contig80:879830..880238+ (Fucus serratus male)
ATGAAATCCTCGCAGACCCAAAACGAAAACACTTCCTACGGTCCCAGCGT
TGGATTCATCATTACAAATATCGGCCCACCGGTACTATCTTGGCCGGCCA
ATTTCTCGAAGATGGGACGGTCTTCTGTCAGCGTGCCGTCCGTAAGCGTC
TTCTACGCTGAACTGGGAGAGGATGTTCTTGATCTTGCGCTCGAGGCTCG
AAGTCTACCTGTCAAAACAAATTATACTGTATGGGAAATTTTCGAATCCA
GAAACAAAACCACGCGCAAGACATTTTGCAATAATGGACACTGTCGTCAA
TCAGAACTGTCGTTCGATCCTCAGTTTCTCGTCCATTTTGTAGTTGTCTG
TAACTCGATCACACACCTTCATCATGACACCCTTTTTCAAAAGGAAAGTC
AGAAGGGAATGAAATCCTCGCAGACCCAAAACGAAAACACTTCCTACGGT
CCCAGCGTTGGATTCATCATTACAAATATCGGCCCACCGGTACTATCTTG
GCCGGCCAATTTCTCGAAGATGGGACGGTCTTCTGTCAGCGTGCCGTCCG
TAAGCGTCTTCTACGCTGAACTGGGAGAGGATGTTCTTGATCTTGCGCTC
GAGGCTCGAAGTCTACCTGTCAAAACAAATTATACTGTATGGGAAATTTT
CGAATCCAGAAACAAAACCACGCGCAAGACATTTTGCAATAATGGACACT
GTCGTCAATCAGAACTGTCGTTCGATCCTCAGTTTCTCGTCCATTTTGTA
GTTGTCTGTAACTCGATCACACACCTTCATCATGACACCCTTTTTCAAAA
GGAAAGTCAGAAGGGA
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