mRNA_F-serratus_M_contig80.19398.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig80.19398.1
Unique NamemRNA_F-serratus_M_contig80.19398.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig80.19398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig80contigF-serratus_M_contig80:811246..811964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size719
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig80.19398.1prot_F-serratus_M_contig80.19398.1Fucus serratus malepolypeptideF-serratus_M_contig80 811297..811761 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932386.3629713-UTR-F-serratus_M_contig80:811245..8112961622932386.3629713-UTR-F-serratus_M_contig80:811245..811296Fucus serratus maleUTRF-serratus_M_contig80 811246..811296 +
1690964283.376238-UTR-F-serratus_M_contig80:811245..8112961690964283.376238-UTR-F-serratus_M_contig80:811245..811296Fucus serratus maleUTRF-serratus_M_contig80 811246..811296 +
1622932386.396449-UTR-F-serratus_M_contig80:811761..8119641622932386.396449-UTR-F-serratus_M_contig80:811761..811964Fucus serratus maleUTRF-serratus_M_contig80 811762..811964 +
1690964283.3985097-UTR-F-serratus_M_contig80:811761..8119641690964283.3985097-UTR-F-serratus_M_contig80:811761..811964Fucus serratus maleUTRF-serratus_M_contig80 811762..811964 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932386.3785233-CDS-F-serratus_M_contig80:811296..8117611622932386.3785233-CDS-F-serratus_M_contig80:811296..811761Fucus serratus maleCDSF-serratus_M_contig80 811297..811761 +
1690964283.3899717-CDS-F-serratus_M_contig80:811296..8117611690964283.3899717-CDS-F-serratus_M_contig80:811296..811761Fucus serratus maleCDSF-serratus_M_contig80 811297..811761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig80.19398.1

>prot_F-serratus_M_contig80.19398.1 ID=prot_F-serratus_M_contig80.19398.1|Name=mRNA_F-serratus_M_contig80.19398.1|organism=Fucus serratus male|type=polypeptide|length=155bp
MIGHFFSAEPIASQEHSNTRSHPPSTMMTSKDSKTKFATKSAISKYAQRG
QSLESSQSSKGSGCDSSHPSDWLSNASSWESVQLGGGNKNQRSGSGFLRG
VFGYVKGRTKFKCFQILKAATVRKSIVIVRPSKIQQSLDLSISASAKRIY
EWVS*
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mRNA from alignment at F-serratus_M_contig80:811246..811964+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig80.19398.1 ID=mRNA_F-serratus_M_contig80.19398.1|Name=mRNA_F-serratus_M_contig80.19398.1|organism=Fucus serratus male|type=mRNA|length=719bp|location=Sequence derived from alignment at F-serratus_M_contig80:811246..811964+ (Fucus serratus male)
GGCGTTTGGGTGTCGATAGACCTCCGCATCGCGAGCTCCTCCTCATCGTA
AATGATCGGTCATTTCTTCTCAGCTGAGCCTATTGCTTCCCAGGAGCACT
CTAATACTAGGTCCCACCCGCCCAGTACGATGATGACCAGCAAGGATAGT
AAAACGAAGTTCGCAACCAAATCGGCCATCTCGAAGTACGCGCAACGAGG
TCAGTCTCTAGAGTCTTCTCAGTCGAGCAAAGGCAGCGGATGTGATTCTT
CCCACCCAAGTGACTGGCTTTCAAACGCCTCCTCGTGGGAATCTGTTCAG
CTCGGCGGTGGAAACAAGAACCAACGTTCGGGTTCAGGGTTCCTTAGAGG
CGTTTTCGGGTACGTGAAGGGTAGGACCAAATTCAAATGTTTCCAAATTT
TGAAAGCAGCTACCGTACGAAAATCAATCGTGATCGTTCGACCAAGTAAA
ATACAGCAGTCTTTGGACTTGTCTATCTCTGCATCAGCAAAACGCATATA
CGAATGGGTTTCCTGAGCACGCTTAAAATAACCAACTTCAGAGGCGCATG
GTAGATATTTCTACACGGCTTTCGTTGGGTTTTCGTCGAATCTGATGTTT
ATAAAGACGAAAATACTTGGAAAAGATGCAAGAACACCAAACCTAAGATT
TTGTATGTACTTCATTTACTTCAACCCGGCCGACTTATTTGGAAATATAG
TATATCTGGCAGAAGGAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig80:811246..811964+

>mRNA_F-serratus_M_contig80.19398.1 ID=mRNA_F-serratus_M_contig80.19398.1|Name=mRNA_F-serratus_M_contig80.19398.1|organism=Fucus serratus male|type=CDS|length=930bp|location=Sequence derived from alignment at F-serratus_M_contig80:811246..811964+ (Fucus serratus male)
ATGATCGGTCATTTCTTCTCAGCTGAGCCTATTGCTTCCCAGGAGCACTC
TAATACTAGGTCCCACCCGCCCAGTACGATGATGACCAGCAAGGATAGTA
AAACGAAGTTCGCAACCAAATCGGCCATCTCGAAGTACGCGCAACGAGGT
CAGTCTCTAGAGTCTTCTCAGTCGAGCAAAGGCAGCGGATGTGATTCTTC
CCACCCAAGTGACTGGCTTTCAAACGCCTCCTCGTGGGAATCTGTTCAGC
TCGGCGGTGGAAACAAGAACCAACGTTCGGGTTCAGGGTTCCTTAGAGGC
GTTTTCGGGTACGTGAAGGGTAGGACCAAATTCAAATGTTTCCAAATTTT
GAAAGCAGCTACCGTACGAAAATCAATCGTGATCGTTCGACCAAGTAAAA
TACAGCAGTCTTTGGACTTGTCTATCTCTGCATCAGCAAAACGCATATAC
GAATGGGTTTCCTGAATGATCGGTCATTTCTTCTCAGCTGAGCCTATTGC
TTCCCAGGAGCACTCTAATACTAGGTCCCACCCGCCCAGTACGATGATGA
CCAGCAAGGATAGTAAAACGAAGTTCGCAACCAAATCGGCCATCTCGAAG
TACGCGCAACGAGGTCAGTCTCTAGAGTCTTCTCAGTCGAGCAAAGGCAG
CGGATGTGATTCTTCCCACCCAAGTGACTGGCTTTCAAACGCCTCCTCGT
GGGAATCTGTTCAGCTCGGCGGTGGAAACAAGAACCAACGTTCGGGTTCA
GGGTTCCTTAGAGGCGTTTTCGGGTACGTGAAGGGTAGGACCAAATTCAA
ATGTTTCCAAATTTTGAAAGCAGCTACCGTACGAAAATCAATCGTGATCG
TTCGACCAAGTAAAATACAGCAGTCTTTGGACTTGTCTATCTCTGCATCA
GCAAAACGCATATACGAATGGGTTTCCTGA
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